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81. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/159.pdf
Effect of Cry3Aa toxin on gut peptidases expression levels in Tenebrio molitor larvae Yarahmadov T.Y. Institute of Genetic Resources NAS, Azadliq ave 155, Baku, Azerbaijan, AZ1106, turaro04@gmail.com Jia-Ying Zhu College ... This study is devoted to the analysis of the effect of Bt Cry3Aa toxin on the expression of gut mRNA in the larvae of Tenebrio molitor (Coleoptera: Tenebrionidae). ... Proteinase-mediated insect resistance to Bacillus thuringiensis toxins. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/159.pdf -- 105.5 Кб -- 15.06.2015
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82. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/162.pdf
... Complete proteomes were extracted from these genomes and domain architectures were assigned to each protein using the Pfam domain database [6] and the COGs database [5]. ... PF02874 (CL0275) ATP-synt_ab_N (ATP synthase alpha/beta family, beta-barrel domain) PF00006 (CL0023) ATP-synt_ab (ATP synthase alpha/beta family, nucleotide-binding domain) PF00306 (\N) PF00231 (\N) PF00119 (\N) PF00137 (\N) ATP-synt_ab_C (ATP synthase alpha/beta chain, C terminal domain) ATP-synt (ATP synthase) Figure 1. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/162.pdf -- 471.3 Кб -- 15.06.2015
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83. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/160.pdf
Adiantum hispidulum chloroplast genome high-throughput sequencing and comparative analysis of cpDNA inverted repeat regions of Adiantum species Belenikin M.S. 1 1,2,3 , Krinitsina A.A.1, Logacheva M.D.1, Kuptsov S.V.1, Speranskaya A.S. 1 Lomonosov Moscow State University ... Comparison of our data with previously published sequences demonstrated the undoubted common origin of Russian isolate and cultivated isolate "A79" from USA: Virginia (see table 1). ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/160.pdf -- 110.2 Кб -- 15.06.2015
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84. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
Sequence alignment of non-superposable beta-sheets Evgeniy Aksianov Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia, evaksianov@gmail.com Andrey V. Alexeevski Belozersky Institute, Lomonosov Moscow State University, Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia aba@belozersky.msu.ru Protein 3D structures usually are more conserved than their sequences. ... Beta-strands are contained in sheet map rows. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf -- 130.1 Кб -- 15.06.2015
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85. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/81.pdf
Probing -directed structured elements detection in RNA sequences S.V. Vinogradova Moscow State University, Faculty of Bioengineering and Bioinformatics , 119991, Moscow , GSP-1, Leninskiye Gory, MSU, 1-73 kintany@gmail.com R.A. Soldatov Moscow State University, Faculty of Bioengineering and Bioinformatics , 119991, Moscow , GSP-1, Leninskiye Gory, MSU, 1-73 solrust@mail.ru M.A. Mironov ... 2013) Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/81.pdf -- 99.9 Кб -- 15.06.2015
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86. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/78.pdf
Estimation of selection pressure on degenerate sequences in genomes: choice of method I.S. Rusinov,1 A.S. Ershova, 1 2,3,4 A.S. Karyagina, 2,3,4 S.A. Spirin, 1,2,5 A.V. Alexeevski 1,2,5 Lomonosov Moscow State University, Faculty of Bioengineering and Bioinformatics, Moscow 119992, Russia;2Lomonosov Moscow State University, Belozersky Institute of Physical and Chemical Biology, Moscow 119992, Russia; 3Gamaleya Institute of Epidemiology and Microbiology, ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/78.pdf -- 108.1 Кб -- 15.06.2015
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87. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/79.pdf
DegenPrimer: a software for in silico simulation of multiplex PCR with degenerate primers E. A. Taranov, A. V. Lebedinsky Winogradsky Institute of Microbiology,7/2, Prospekt 60-letiya Oktyabrya 117312, Moscow, Russian Federation , evgeny.taranov@gmail.com PCR with degenerate primers is a powerful tool that is often used in molecular studies of ecology and phylogeny of microorganism. ... Allawi, H. T., & SantaLucia, J., 1998b. Thermodynamics of internal C.T mismatches in DNA. ... SantaLucia, J., 1998. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/79.pdf -- 443.1 Кб -- 15.06.2015
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88. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/76.pdf
... 2, Moscow 123182, Russia Sergey V. Razin Institute of Gene Biology, RAS, Vavilova st. 34/5, Moscow 119334, Russia sergey.v.razin@usa.net In Drosophila, interphase chromosomes are organized in topologically associated domains (TADs) within which chromatin-chromatin interactions are frequent, while interactions across domain borders are rare [1]. ... Here we used Hi-C method [5] to map TADs in four drosophila cell lines of different origin. ... Cell 48:471­84. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/76.pdf -- 154.7 Кб -- 15.06.2015
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89. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf
Bioinf ormatic analysis of diverse protein superf amilies to design improved enzymes Dmitry Suplatov , Nikolay Panin, Tatyana Shcherbakova, Ilyas Khaliullin, Vytas Svedas Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and F aculty of Bioengineering and Bioinformatics ... D. Suplatov, E. Kirilin, V. Takhaveev, V. Svedas (2014) Zebra: web-server for bioinformatic analysis of diverse protein families, J.Biomol.Struct.Dyn., ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf -- 189.3 Кб -- 15.06.2015
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90. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/71.pdf
Transcriptional Regulation of the Carbohydrate Metabolism in the Bifidobacterium Genus Matvei S. Khoroshkin1, Semen A. Leyn1, Dmitry A. Rodionov 1 2 1,2 Institute for Information Transmission Problems, Moscow, Russian Federation Sanford-Burnham Med. ... We predicted two novel TFs for the central carbohydrate metabolism, named AraQ and Crp, that are present in all the sequenced Bifidobacteria. ... A novel Crp-family TF presumably regulates genes involved in fermentation and other pathways. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/71.pdf -- 117.4 Кб -- 15.06.2015
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91. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/68.pdf
Computer-Aided Identification of Small-Molecule HIV-1 Entry Inhibitors Mimicking Cellular Receptor CD4 A.M. Andrianov 1 1 , Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus , Kuprevich Street, 5/2, 220141 Minsk, Republic of Belarus , andrianov@iboch.bas-net.by I.A. Kashyn 1 1 Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus , Kuprevich Street, 5/2, 220141 Minsk, Republic of ... The docked structure of the MMs03927209 compound with gp120. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/68.pdf -- 370.4 Кб -- 15.06.2015
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92. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/77.pdf
Reconstruction of GABA and taurine metabolic regulons, controlled by MocR-subfamily transcription factors I. A. Suvorova1, D. A. Rodionov 1 1 Institute for Information Transmission Problems RAS (the Kharkevich Institute), Bolshoi Karetny per. ... MocR subfamily is not very well studied; among few described TFs from this group there are GabR and TauR, activators of -aminobutyrate (GABA) and taurine metabolism, respectively [2,3,4]. ... TauR-regulon structure varies among Rhodobacterales. ...
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93. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/69.pdf
... In this work, computational prediction of novel HIV-1 entry inhibitors presenting peptidomimetics of potent bNAb VRC01 that partially mimics binding of the cellular receptor CD4 to gp120 was carried out based on the analysis of the X-ray complex of this antibody antigen-binding fragment with the HIV envelope gp120 core [2]. ... In particular, the MMs02391040, MMs03919199, MMs02489375 and MMs03927127 compounds (Figure 1) form hydrogen bonds and salt bridges with Asp-368 of gp120. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/69.pdf -- 228.8 Кб -- 15.06.2015
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94. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/67.pdf
Molecular Dynamics Simulations to Identify the Binding Hot Spots of the HIV-1 Coat Protein GP41 and Broadly Neutralizing Antibody 10E8 1 I.A. Kashyn 1 Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus , Kuprevich Street, 5/2, 220141 Minsk, Republic of Belarus , lighkia@gmail.com A.V. Tuzikov 2 2 United Institute of Informatics Problems, National Academy of Sciences of Belarus , Surganov Street 6, 220012 Minsk, Republic of ... Table 1. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/67.pdf -- 148.8 Кб -- 15.06.2015
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95. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/63.pdf
GWAS studies of SNPs related to type 2 diabetes in a Mongolian population sample in China Haihua Bai, Haiping Liu, Suyalatu Suyalatu, Ming Chen, Qizhu Wu Inner Mongolia University for the Nationalities, Tongliao ... Cytology and Genetics, Lavrentyeva 10, 630090, Novosibirsk, Russia, {bob,posukh,ludos,orlov}@bionet.nsc.ru Large scale genome wide association studies ( GWAS ) have identified approximately 70 single nucleotide polymorphisms ( ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/63.pdf -- 102.6 Кб -- 15.06.2015
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96. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/60.pdf
Quantitative Structural Model for Prediction and Analysis of R-loop Forming Sequences in the Genomes Piroon Jenjaroenpun Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg Thidathip Wongsurawat ... -star.edu.sg Vladimir A. Kuznetsov Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg INTRODUCTION The R-loop is a three-stranded nucleic acid structure that is co-transcriptionally formed RNA- ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/60.pdf -- 186.7 Кб -- 15.06.2015
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97. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/61.pdf
Single cell molecular toolkit for inducible resistance to complete desiccation Oleg Gusev1, Alexander Nesmelov1, Ruslan Deviatiarov1, Elena Shagimardanova1, Jun Okada2, Richard Coernette2, Maria Logacheva3, Alexei Penin3, Al Forrest4 and Takahiro Kikawada1, 1 2 3 4 2 Institute of Fundamental Biology and Medicine, Kazan Federal University, Russia National Institute of Agrobiological Sciences, Tsukuba, Japan Belozersky Research ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/61.pdf -- 83.4 Кб -- 15.06.2015
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98. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/62.pdf
APOBEC induced mutations are strongly enriched on the lagging strand during replication in human cancers Vladimir B. Seplyarskiy1,2, Ruslan A. Soldatov3, Konstantin Y. Popadin4, Stylianos E. Antonarakis and Sergey I. Nikolaev 1 2 4 4 Institute of Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia Pirogov Russian National Research Medical University, Ostrovitianov str. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/62.pdf -- 197.6 Кб -- 15.06.2015
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99. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/55.pdf
Why are genome regulatory regions AT-enriched? Alexander A. Osypov Laboratory of Cell Genome Functioning, Institute of Cell Biophysics of RAS, 142290, Pushchino MR, Russia, aosypov@gmail.com Genome DNA physical properties define its shape in the functional space and influence its interactions with proteins, esp. for transcription regulation. ... Binding frequency of RNA polymerase to DNA along the genome, measured in direct experiment, correlates to the calculated electrostatic potential. ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/55.pdf -- 101.0 Кб -- 15.06.2015
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100. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/56.pdf
Assessing the impact of horizontal gene transfer on the evolution of prokaryotes Makarenkov, V. Department of Computer Science, UniversitИ du QuИbec Ю MontrИal, Case postale 8888 ... McGill University, Faculty of Medicine, 1010 Sherbrook Street West, Montreal (Quebec) H3A 2R7 Canada, email: dunarel@mcgill.ca Horizontal Gene Transfer ( HGT ) is one of the major evolutionary processes affecting the evolution of prokaryotic species [1, 2] ...
[ Текст ]  Ссылки http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/56.pdf -- 90.7 Кб -- 15.06.2015
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