... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

Еще в разделе: (Показать все результаты (>142) - bioinf.fbb.msu.ru/ )

• SDPpred
• SDPlight
• SDPsite

. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

Еще в разделе: (Показать все результаты (>286) - monkey.belozersky.msu.ru/ )

• SDPpred
• Inquiry information || Parsimony algorithm

... Geometry optimization can be performed with analytical gradients at the HF, MP2, CI, DFT, TDHF, and TDDFT levels. ... The table below summarizes the current main capabilities of Firefly : Wavefunction RHF UHF ROHF GVB MCSCF Semiempirical SCF dm dm dm dm - SCF energy cdp cdp cdp cdp cdp SCF gradient cdp cdp cdp cdp cdp SCF Analytical Hessian cdp * - cdp * cdp * - DFT energy cdp cdp cdp - - DFT gradient cdp cdp ...

Еще в разделе: (Показать все результаты (>71) - classic.chem.msu.su/ )

Below is a list of additional documentation pages that apply to the Apache web server development project. ... Description of Apache's Application Programming Interface. ... Reading Client Input in Apache 1.2 . Describes differences between Apache 1.1 and 1.2 in how modules read information from the client. ... Notes about Apache's compatibility with the NCSA server. ... Performance Notes (BSD 4.4) . Some notes about ways to improve/optimize Apache performance on BSD 4.4 systems. ...

Еще в разделе: (Показать все результаты (>91) - neptun.sai.msu.ru/ )

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

Еще в разделе: (Показать все результаты (>324) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

Еще в разделе: (Показать все результаты (>1787) - www.sai.msu.su/ )

• Further Information and Bibliography
• SAL- Numerical Analysis - Discrete Methods Related Tools - BoxLib
• authspeed - determine authentication delays

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

Еще в разделе: (Показать все результаты (>6982) - mouse.belozersky.msu.ru/ )

Regular algorithms for the analysis of radio-location images" . Ageev A.L., Korshunov M.E. The problem of navigation on the basis of radio-location images is considered. ... In order to solve the navigation problem, it is necessary to determine, with a high accuracy, the coordinates of the point from which an image is formed. ... A new regularization algorithm is proposed to enhance the accuracy of determining the coordinates. ... PostScript (in Russian) (97.4MB) . PDF (in Russian) (5.87MB) . ...

Еще в разделе: (Показать все результаты (>566) - num-meth.srcc.msu.ru/ )

• "A numerical algorithm for the analysis of viscoelastic waves in the
• "Finite difference schemes for integrating the equations for sample particle
• "Finite-difference and projection-difference schemes for the unsteady motion of

A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

Еще в разделе: (Показать все результаты (>244) - www.genebee.msu.ru/ )

• Screening of pattern or alignment against PROTEIN databank
• Genebee Predicted Annotation
• DIMACS Series in Discrete Mathematics

... Inter-Communication . ... All point-to-point communication described thus far has involved communication between processes that are members of the same group. ... An inter-communication is a point-to-point communication between processes in different groups. The group containing a process that initiates an inter-communication operation is called the ``local group,'' that is, the sender in a send and the receiver in a receive. ... An inter-communicator cannot be used for collective communication. ...

Еще в разделе: (Показать все результаты (>563) - www.parallel.ru/ )

• Reserved Keys | PARALLEL.RU - Информационно-аналитический центр по параллельным
• Jumpshot | PARALLEL.RU - Информационно-аналитический центр по параллельным
• MPI_Group_difference | PARALLEL.RU - Информационно-аналитический центр по

... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first ... 22 * self.positions -- sorted list of positions of the project.alignment that . ...

Еще в разделе: (Показать все результаты (>34931) - kodomo.fbb.msu.ru/ )

• allpy: lib/block.py annotate
• allpy: 21cfc7897a8f allpy/markup.py
• allpy: allpy/fileio.py diff

... A new mouse-eared bat (Mammalia: Chiroptera: Vespertilionidae) from Vietnam . ... A new mouse-eared bat (Mammalia: Chiroptera: Vespertilionidae) from the Myotis 'siligorensis' species group is being described from the Hon Ba Mountain, ca. 30 km WSW of Nha Trang, Khanh Hoa Province, Vietnam (12.1113њ N, 108.953њ E, 1250 m ASL), based on a set of morphological and genetic characters. ... References Download PDF . ... Individuals of Rhinolophus and Miniopterus belong to undetermined species. ...