Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/2xpj.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 22:37:36 2013 Дата индексирования: Fri Feb 28 21:27:52 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 22:37:34 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/2xpj.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

2xpj_A 2 156 1 156 PF00983.13 Tymo_coat Domain 18 172 172 248.6 2.5e-74 1 CL0055
#HMM sgeqspsivqpFqfevaslgtketsaqislasadslakltslyRhakltelkavitPtalaianPltvalvWvpanstatpaqilkvyGgqrfvvGGainssspikvplnlesvnpiiKDsvtYtDtPkLLvystaaseasktptasitisGklr
#MATCH ++eqsp+iv+pFqfe++++gt+et+aq+sl++ad ++klt+ yRha+++e+ka++tPt+la++nPltv+l+Wvpans+atp+qil+vyGgq+fv+GGai+++++i+vplnl+svn+++KDsvtYtDtPkLL+ys+a++++sk+ptasi+isG++r
#PP 89*******************************************************************************************************************************************************96
#SEQ NTEQSPAIVLPFQFEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSNPLTVYLAWVPANSPATPTQILRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTNPSKIPTASIQISGRIR
#CS SSS---EEEEEEEEEEEEESSS-EEEEEEGGGSHHHHHHHTTEEEEEEEEEEEEEEE-TTTTTS-EEEEEEEEETT----GGGGGGBSS-EEEEESSTTTTTS-EEEE--TTTS--EEE-SS--SS-EEEEEEEE--SS--SS-SEEEEEEEEEE
2xpj_B 5 171 5 171 PF00983.13 Tymo_coat Domain 1 172 172 249.2 1.7e-74 1 CL0055
#HMM kvkqksinakgselplqsgeqspsivqpFqfevaslgtketsaqislasadslakltslyRhakltelkavitPtalaianPltvalvWvpanstatpaqilkvyGgqrfvvGGainssspikvplnlesvnpiiKDsvtYtDtPkLLvystaaseasktptasitisGklr
#MATCH kvkq+si a+gs l+ qsp+iv+pFqfe++++gt+et+aq+sl++ad ++klt+ yRha+++e+ka++tPt+la++nPltv+l+Wvpans+atp+qil+vyGgq+fv+GGai+++++i+vplnl+svn+++KDsvtYtDtPkLL+ys+a++++sk+ptasi+isG++r
#PP 689**********97.....799***************************************************************************************************************************************************96
#SEQ KVKQASIPAPGSILS-----QSPAIVLPFQFEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSNPLTVYLAWVPANSPATPTQILRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTNPSKIPTASIQISGRIR
#CS EXXXXXXXXXXBXXXBXSSS---EEEEEEEEEEEEESSS-EEEEEEGGGSHHHHHHHTTEEEEEEEEEEEEEEE-TTTTTS-EEEEEEEEETT----GGGGGGBSS-EEEEESSTTTTTS-EEEE--TTTS--EEE-SS--SS-EEEEEEEE--SS--SS-SEEEEEEEEEE
2xpj_C 5 176 5 176 PF00983.13 Tymo_coat Domain 1 172 172 265.3 1.9e-79 1 CL0055
#HMM kvkqksinakgselplqsgeqspsivqpFqfevaslgtketsaqislasadslakltslyRhakltelkavitPtalaianPltvalvWvpanstatpaqilkvyGgqrfvvGGainssspikvplnlesvnpiiKDsvtYtDtPkLLvystaaseasktptasitisGklr
#MATCH kvkq+si a+gs l+++++eqsp+iv+pFqfe++++gt+et+aq+sl++ad ++klt+ yRha+++e+ka++tPt+la++nPltv+l+Wvpans+atp+qil+vyGgq+fv+GGai+++++i+vplnl+svn+++KDsvtYtDtPkLL+ys+a++++sk+ptasi+isG++r
#PP 689***********************************************************************************************************************************************************************96
#SEQ KVKQASIPAPGSILSQPNTEQSPAIVLPFQFEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSNPLTVYLAWVPANSPATPTQILRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTNPSKIPTASIQISGRIR
#CS EXXXXXXXXXXBXXXBXSSS---EEEEEEEEEEEEESSS-EEEEEEGGGSHHHHHHHTTEEEEEEEEEEEEEEE-TTTTTS-EEEEEEEEETT----GGGGGGBSS-EEEEESSTTTTTS-EEEE--TTTS--EEE-SS--SS-EEEEEEEE--SS--SS-SEEEEEEEEEE