Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3vyb.std.txt Дата изменения: Wed Jan 23 17:40:42 2013 Дата индексирования: Mon Feb 4 00:34:35 2013 Кодировка: Поисковые слова: m 81

REM -------------------------------------------------------------------- 3VYB
REM 3VYB
REM STRIDE: Knowledge-based secondary structure assignment 3VYB
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3VYB
REM 3VYB
REM Residue accessible surface area calculation 3VYB
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3VYB
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3VYB
REM 3VYB
REM ------------------------ General information ----------------------- 3VYB
REM 3VYB
HDR HYDROLASE/DNA 22-SEP-12 3VYB 3VYB
CMP MOL_ID: 1; 3VYB
CMP MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; 3VYB
CMP CHAIN: A; 3VYB
CMP FRAGMENT: METHYL CPG BINDING DOMAIN, UNP RESIDUES 69-136; 3VYB
CMP SYNONYM: METHYL-CPG-BINDING PROTEIN MBD4, MISMATCH-SPECIFIC 3VYB
CMP GLYCOSYLASE; 3VYB
CMP EC: 3.2.2.-; 3VYB
CMP ENGINEERED: YES; 3VYB
CMP MOL_ID: 2; 3VYB
CMP MOLECULE: DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP 3VYB
CMP 3'); 3VYB
CMP CHAIN: B; 3VYB
CMP ENGINEERED: YES; 3VYB
CMP MOL_ID: 3; 3VYB
CMP MOLECULE: DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP 3VYB
CMP 3'); 3VYB
CMP CHAIN: C; 3VYB
CMP ENGINEERED: YES 3VYB
SRC MOL_ID: 1; 3VYB
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 3VYB
SRC ORGANISM_COMMON: MOUSE; 3VYB
SRC ORGANISM_TAXID: 10090; 3VYB
SRC GENE: MBD4; 3VYB
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3VYB
SRC EXPRESSION_SYSTEM_TAXID: 562; 3VYB
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 3VYB
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3VYB
SRC MOL_ID: 2; 3VYB
SRC SYNTHETIC: YES; 3VYB
SRC MOL_ID: 3; 3VYB
SRC SYNTHETIC: YES 3VYB
AUT J.OTANI,K.ARITA,T.KATO,M.KINOSHITA,M.ARIYOSHI,M.SHIRAKAWA 3VYB
REM 3VYB
REM -------------------- Secondary structure summary ------------------- 3VYB
REM 3VYB
CHN /data/npidb/pdb/pdb_new/all/pdb3vyb.pdb A 3VYB
REM 3VYB
REM . . . . . 3VYB
SEQ 1 PVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET 50 3VYB
STR TTTTEEEEEEE TTTTTTEEEEEEETTTT EE HHHHHHHHHHHH 3VYB
REM 3VYB
REM . 3VYB
SEQ 51 FLKPEDFNFTVLP 63 3VYB
STR GGG 3VYB
REM 3VYB
REM 3VYB
REM 3VYB
LOC AlphaHelix LYS 108 A GLY 119 A 3VYB
LOC 310Helix PRO 125 A ASP 127 A 3VYB
LOC Strand GLU 78 A ARG 84 A 3VYB
LOC Strand LYS 92 A ILE 98 A 3VYB
LOC Strand LYS 104 A PHE 105 A 3VYB
LOC TurnII PRO 74 A TRP 77 A 3VYB
LOC TurnIV SER 86 A THR 89 A 3VYB
LOC TurnI GLY 87 A ALA 90 A 3VYB
LOC TurnII THR 89 A LYS 92 A 3VYB
LOC TurnI SER 99 A GLY 102 A 3VYB
LOC Disulfide CYS 75 A CYS 75 A PDB 3VYB
REM 3VYB
REM --------------- Detailed secondary structure assignment------------- 3VYB
REM 3VYB
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3VYB
ASG PRO A 72 1 C Coil 360.00 -155.47 180.3 3VYB
ASG VAL A 73 2 C Coil -104.66 123.50 58.7 3VYB
ASG PRO A 74 3 T Turn -50.09 142.23 81.3 3VYB
ASG CYS A 75 4 T Turn -53.77 125.67 131.2 3VYB
ASG GLY A 76 5 T Turn 90.09 -7.37 55.8 3VYB
ASG TRP A 77 6 T Turn -94.46 160.99 57.6 3VYB
ASG GLU A 78 7 E Strand -130.92 139.73 106.6 3VYB
ASG ARG A 79 8 E Strand -113.73 129.09 138.1 3VYB
ASG VAL A 80 9 E Strand -116.85 131.00 23.4 3VYB
ASG VAL A 81 10 E Strand -115.53 135.17 75.4 3VYB
ASG LYS A 82 11 E Strand -135.72 153.64 129.3 3VYB
ASG GLN A 83 12 E Strand -121.16 128.51 95.8 3VYB
ASG ARG A 84 13 E Strand -66.11 143.79 106.4 3VYB
ASG LEU A 85 14 C Coil -121.01 -15.31 148.7 3VYB
ASG SER A 86 15 T Turn -141.55 165.09 98.9 3VYB
ASG GLY A 87 16 T Turn 81.49 -176.99 62.4 3VYB
ASG LYS A 88 17 T Turn -59.03 -27.52 218.0 3VYB
ASG THR A 89 18 T Turn -98.70 5.84 49.8 3VYB
ASG ALA A 90 19 T Turn -41.82 141.47 49.8 3VYB
ASG GLY A 91 20 T Turn 91.78 -21.02 37.2 3VYB
ASG LYS A 92 21 E Strand -73.44 158.23 132.3 3VYB
ASG PHE A 93 22 E Strand -112.27 144.84 131.7 3VYB
ASG ASP A 94 23 E Strand -122.62 135.81 64.2 3VYB
ASG VAL A 95 24 E Strand -127.52 138.97 55.1 3VYB
ASG TYR A 96 25 E Strand -147.17 160.39 52.7 3VYB
ASG PHE A 97 26 E Strand -119.11 148.62 55.9 3VYB
ASG ILE A 98 27 E Strand -118.47 125.06 39.3 3VYB
ASG SER A 99 28 T Turn -72.98 167.14 4.5 3VYB
ASG PRO A 100 29 T Turn -55.69 -31.02 66.9 3VYB
ASG GLN A 101 30 T Turn -89.87 1.66 146.6 3VYB
ASG GLY A 102 31 T Turn 92.76 7.43 49.5 3VYB
ASG LEU A 103 32 C Coil -71.23 134.45 86.4 3VYB
ASG LYS A 104 33 E Strand -104.16 129.36 122.8 3VYB
ASG PHE A 105 34 E Strand -120.63 124.37 21.1 3VYB
ASG ARG A 106 35 C Coil -100.70 -4.83 201.5 3VYB
ASG SER A 107 36 C Coil -144.85 152.81 56.7 3VYB
ASG LYS A 108 37 H AlphaHelix -67.69 -27.23 187.6 3VYB
ASG ARG A 109 38 H AlphaHelix -71.60 -45.24 216.3 3VYB
ASG SER A 110 39 H AlphaHelix -71.88 -30.37 46.7 3VYB
ASG LEU A 111 40 H AlphaHelix -72.69 -43.09 30.5 3VYB
ASG ALA A 112 41 H AlphaHelix -58.82 -41.98 48.2 3VYB
ASG ASN A 113 42 H AlphaHelix -62.72 -43.19 115.6 3VYB
ASG TYR A 114 43 H AlphaHelix -64.14 -40.63 41.2 3VYB
ASG LEU A 115 44 H AlphaHelix -64.53 -26.60 72.9 3VYB
ASG LEU A 116 45 H AlphaHelix -48.13 -48.36 132.6 3VYB
ASG LYS A 117 46 H AlphaHelix -112.59 -13.50 177.2 3VYB
ASG ASN A 118 47 H AlphaHelix -117.90 4.27 85.9 3VYB
ASG GLY A 119 48 H AlphaHelix -79.07 -19.24 44.9 3VYB
ASG GLU A 120 49 C Coil -69.41 140.15 140.1 3VYB
ASG THR A 121 50 C Coil -134.12 137.42 126.2 3VYB
ASG PHE A 122 51 C Coil -121.24 160.87 144.2 3VYB
ASG LEU A 123 52 C Coil -134.88 140.82 127.0 3VYB
ASG LYS A 124 53 C Coil -124.42 156.81 126.3 3VYB
ASG PRO A 125 54 G 310Helix -52.74 -37.36 118.4 3VYB
ASG GLU A 126 55 G 310Helix -63.18 -16.33 155.1 3VYB
ASG ASP A 127 56 G 310Helix -78.66 -7.39 89.0 3VYB
ASG PHE A 128 57 C Coil -118.30 127.82 115.5 3VYB
ASG ASN A 129 58 C Coil -102.55 106.65 128.9 3VYB
ASG PHE A 130 59 C Coil -93.55 12.18 192.7 3VYB
ASG THR A 131 60 C Coil -116.60 150.50 100.1 3VYB
ASG VAL A 132 61 C Coil -105.80 127.54 139.8 3VYB
ASG LEU A 133 62 C Coil -62.95 164.05 141.2 3VYB
ASG PRO A 134 63 C Coil -21.18 360.00 178.8 3VYB