Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2glo.std.txt Дата изменения: Thu Jan 20 15:28:34 2011 Дата индексирования: Fri Feb 11 17:55:24 2011 Кодировка: Поисковые слова: m 81

REM -------------------------------------------------------------------- 2GLO
REM 2GLO
REM STRIDE: Knowledge-based secondary structure assignment 2GLO
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2GLO
REM 2GLO
REM Residue accessible surface area calculation 2GLO
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2GLO
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2GLO
REM 2GLO
REM ------------------------ General information ----------------------- 2GLO
REM 2GLO
HDR TRANSCRIPTION/DNA 05-APR-06 2GLO 2GLO
CMP MOL_ID: 1; 2GLO
CMP MOLECULE: BRINKER CG9653-PA; 2GLO
CMP CHAIN: A; 2GLO
CMP FRAGMENT: BRINKER DNA BINDING DOMAIN (RESIDUES 43-101); 2GLO
CMP SYNONYM: BRINKER NUCLEAR REPRESSOR; 2GLO
CMP ENGINEERED: YES; 2GLO
CMP MOL_ID: 2; 2GLO
CMP MOLECULE: 5'-D(*TP*GP*AP*GP*GP*CP*GP*TP*CP*AP*AP*C)-3'; 2GLO
CMP CHAIN: B; 2GLO
CMP SYNONYM: DNA OPTOMOTOR BLIND (OMB) ENHANCER; 2GLO
CMP ENGINEERED: YES; 2GLO
CMP MOL_ID: 3; 2GLO
CMP MOLECULE: 5'-D(*GP*TP*TP*GP*AP*CP*GP*CP*CP*TP*CP*A)-3'; 2GLO
CMP CHAIN: C; 2GLO
CMP SYNONYM: DNA OPTOMOTOR BLIND (OMB) ENHANCER; 2GLO
CMP ENGINEERED: YES 2GLO
SRC MOL_ID: 1; 2GLO
SRC ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; 2GLO
SRC ORGANISM_COMMON: FRUIT FLY; 2GLO
SRC ORGANISM_TAXID: 7227; 2GLO
SRC GENE: BRINKER; 2GLO
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 2GLO
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2GLO
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 2GLO
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2GLO
SRC EXPRESSION_SYSTEM_PLASMID: PET-22B(+); 2GLO
SRC MOL_ID: 2; 2GLO
SRC SYNTHETIC: YES; 2GLO
SRC MOL_ID: 3; 2GLO
SRC SYNTHETIC: YES 2GLO
AUT F.CORDIER,B.HARTMANN,M.ROGOWSKI,M.AFFOLTER,S.GRZESIEK 2GLO
REM 2GLO
REM -------------------- Secondary structure summary ------------------- 2GLO
REM 2GLO
CHN /data/npidb/pdb/pdb_new/all/pdb2glo.pdb A 2GLO
REM 2GLO
REM . . . . . 2GLO
SEQ 1 GSRRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCES 50 2GLO
STR HHHHHHHHHHHH TTTTTTTHHHHHHHH HHHHHHHHH HH 2GLO
REM 2GLO
REM 2GLO
SEQ 51 NLRSSVANN 59 2GLO
STR HHHHHH 2GLO
REM 2GLO
REM 2GLO
REM 2GLO
LOC AlphaHelix PRO 50 A ARG 61 A 2GLO
LOC AlphaHelix GLN 70 A TYR 77 A 2GLO
LOC AlphaHelix ARG 81 A GLN 89 A 2GLO
LOC AlphaHelix GLU 91 A VAL 98 A 2GLO
LOC TurnI ASP 63 A CYS 66 A 2GLO
LOC TurnI ASN 64 A LYS 67 A 2GLO
LOC TurnII CYS 66 A ASN 69 A 2GLO
REM 2GLO
REM --------------- Detailed secondary structure assignment------------- 2GLO
REM 2GLO
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2GLO
ASG GLY A 43 1 C Coil 360.00 -65.33 122.8 2GLO
ASG SER A 44 2 C Coil -84.79 164.39 94.7 2GLO
ASG ARG A 45 3 C Coil -154.53 87.99 207.2 2GLO
ASG ARG A 46 4 C Coil -82.70 174.85 146.5 2GLO
ASG ILE A 47 5 C Coil -91.92 94.45 166.3 2GLO
ASG PHE A 48 6 C Coil -95.50 124.76 62.6 2GLO
ASG THR A 49 7 C Coil -90.29 150.26 75.4 2GLO
ASG PRO A 50 8 H AlphaHelix -60.94 -36.33 40.9 2GLO
ASG HIS A 51 9 H AlphaHelix -61.26 -40.40 104.5 2GLO
ASG PHE A 52 10 H AlphaHelix -66.15 -47.21 40.3 2GLO
ASG LYS A 53 11 H AlphaHelix -54.08 -49.19 50.5 2GLO
ASG LEU A 54 12 H AlphaHelix -69.22 -22.28 14.4 2GLO
ASG GLN A 55 13 H AlphaHelix -74.29 -37.09 67.8 2GLO
ASG VAL A 56 14 H AlphaHelix -67.48 -52.34 0.0 2GLO
ASG LEU A 57 15 H AlphaHelix -60.80 -44.89 0.2 2GLO
ASG GLU A 58 16 H AlphaHelix -61.96 -51.15 101.6 2GLO
ASG SER A 59 17 H AlphaHelix -56.23 -50.01 22.7 2GLO
ASG TYR A 60 18 H AlphaHelix -49.79 -40.45 17.0 2GLO
ASG ARG A 61 19 H AlphaHelix -88.77 -9.69 124.4 2GLO
ASG ASN A 62 20 C Coil -142.92 -20.95 120.5 2GLO
ASG ASP A 63 21 T Turn -64.46 119.37 31.3 2GLO
ASG ASN A 64 22 T Turn -54.89 -18.29 135.9 2GLO
ASG ASP A 65 23 T Turn -85.64 -24.76 103.3 2GLO
ASG CYS A 66 24 T Turn -133.34 -23.66 3.8 2GLO
ASG LYS A 67 25 T Turn -34.38 114.48 110.2 2GLO
ASG GLY A 68 26 T Turn 96.87 -6.12 62.0 2GLO
ASG ASN A 69 27 T Turn -128.89 134.71 67.4 2GLO
ASG GLN A 70 28 H AlphaHelix -87.89 -37.58 32.3 2GLO
ASG ARG A 71 29 H AlphaHelix -61.45 -46.15 108.4 2GLO
ASG ALA A 72 30 H AlphaHelix -60.46 -44.04 18.4 2GLO
ASG THR A 73 31 H AlphaHelix -64.26 -42.76 0.0 2GLO
ASG ALA A 74 32 H AlphaHelix -63.16 -37.57 4.3 2GLO
ASG ARG A 75 33 H AlphaHelix -68.48 -47.02 193.5 2GLO
ASG LYS A 76 34 H AlphaHelix -61.97 -37.43 107.8 2GLO
ASG TYR A 77 35 H AlphaHelix -96.79 -3.50 52.5 2GLO
ASG ASN A 78 36 C Coil 55.29 64.39 129.6 2GLO
ASG ILE A 79 37 C Coil -145.94 -177.27 28.3 2GLO
ASG HIS A 80 38 C Coil -85.75 154.19 107.9 2GLO
ASG ARG A 81 39 H AlphaHelix -87.99 -11.02 85.0 2GLO
ASG ARG A 82 40 H AlphaHelix -76.75 -34.27 78.4 2GLO
ASG GLN A 83 41 H AlphaHelix -64.03 -43.57 62.9 2GLO
ASG ILE A 84 42 H AlphaHelix -60.69 -41.94 0.0 2GLO
ASG GLN A 85 43 H AlphaHelix -67.50 -42.89 77.9 2GLO
ASG LYS A 86 44 H AlphaHelix -68.04 -46.23 119.6 2GLO
ASG TRP A 87 45 H AlphaHelix -59.22 -33.70 22.3 2GLO
ASG LEU A 88 46 H AlphaHelix -61.35 -35.97 40.5 2GLO
ASG GLN A 89 47 H AlphaHelix -65.47 -6.13 162.2 2GLO
ASG CYS A 90 48 C Coil -152.01 18.77 57.5 2GLO
ASG GLU A 91 49 H AlphaHelix -55.15 -39.43 29.8 2GLO
ASG SER A 92 50 H AlphaHelix -57.13 -37.67 97.1 2GLO
ASG ASN A 93 51 H AlphaHelix -72.58 -31.42 82.9 2GLO
ASG LEU A 94 52 H AlphaHelix -62.84 -40.76 9.8 2GLO
ASG ARG A 95 53 H AlphaHelix -58.51 -48.54 79.8 2GLO
ASG SER A 96 54 H AlphaHelix -71.99 -23.68 84.4 2GLO
ASG SER A 97 55 H AlphaHelix -71.78 -37.52 68.1 2GLO
ASG VAL A 98 56 H AlphaHelix -84.03 -9.79 50.7 2GLO
ASG ALA A 99 57 C Coil 57.81 37.87 88.9 2GLO
ASG ASN A 100 58 C Coil -152.28 122.81 119.3 2GLO
ASG ASN A 101 59 C Coil 61.61 360.00 167.9 2GLO