Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/4eot.std.txt Дата изменения: Sun Jan 13 21:17:20 2013 Дата индексирования: Mon Feb 4 00:37:04 2013 Кодировка: Поисковые слова: mare

REM -------------------------------------------------------------------- 4EOT
REM 4EOT
REM STRIDE: Knowledge-based secondary structure assignment 4EOT
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 4EOT
REM 4EOT
REM Residue accessible surface area calculation 4EOT
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 4EOT
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 4EOT
REM 4EOT
REM ------------------------ General information ----------------------- 4EOT
REM 4EOT
HDR TRANSCRIPTION/DNA 15-APR-12 4EOT 4EOT
CMP MOL_ID: 1; 4EOT
CMP MOLECULE: TRANSCRIPTION FACTOR MAFA; 4EOT
CMP CHAIN: A, B; 4EOT
CMP FRAGMENT: DNA-BINDING DOMAIN (UNP RESIDUES 226-318); 4EOT
CMP SYNONYM: PANCREATIC BETA-CELL-SPECIFIC TRANSCRIPTIONAL ACTIV 4EOT
CMP TRANSCRIPTION FACTOR RIPE3B1, V-MAF MUSCULOAPONEUROTIC FIBRO 4EOT
CMP ONCOGENE HOMOLOG A; 4EOT
CMP ENGINEERED: YES; 4EOT
CMP MOL_ID: 2; 4EOT
CMP MOLECULE: 5'-D(*CP*CP*GP*GP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP*GP 4EOT
CMP *G)-3'; 4EOT
CMP CHAIN: C; 4EOT
CMP ENGINEERED: YES; 4EOT
CMP OTHER_DETAILS: MAF-RESPONSE ELEMENT (MARE) UPPER STRAND; 4EOT
CMP MOL_ID: 3; 4EOT
CMP MOLECULE: 5'-D(*CP*CP*CP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP*GP*CP 4EOT
CMP *G)-3'; 4EOT
CMP CHAIN: D; 4EOT
CMP ENGINEERED: YES; 4EOT
CMP OTHER_DETAILS: MAF-RESPONSE ELEMENT (MARE) BOTTOM STRAND 4EOT
SRC MOL_ID: 1; 4EOT
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 4EOT
SRC ORGANISM_COMMON: HUMAN; 4EOT
SRC ORGANISM_TAXID: 9606; 4EOT
SRC GENE: MAFA; 4EOT
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 4EOT
SRC EXPRESSION_SYSTEM_TAXID: 562; 4EOT
SRC MOL_ID: 2; 4EOT
SRC SYNTHETIC: YES; 4EOT
SRC MOL_ID: 3; 4EOT
SRC SYNTHETIC: YES 4EOT
AUT X.LU,G.GUANGA,C.WAN,R.B.ROSE 4EOT
REM 4EOT
REM -------------------- Secondary structure summary ------------------- 4EOT
REM 4EOT
CHN /data/npidb/pdb/pdb_new/all/pdb4eot.pdb A 4EOT
REM 4EOT
REM . . . . . 4EOT
SEQ 1 RFSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKR 50 4EOT
STR HHHHHH HHHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHHHHH 4EOT
REM 4EOT
REM . . . . 4EOT
SEQ 51 VQQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEKL 92 4EOT
STR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 4EOT
REM 4EOT
CHN /data/npidb/pdb/pdb_new/all/pdb4eot.pdb B 4EOT
REM 4EOT
REM . . . . . 4EOT
SEQ 1 FSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRV 50 4EOT
STR HHHHHH HHHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHHHHHH 4EOT
REM 4EOT
REM . . . . 4EOT
SEQ 51 QQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEKLA 92 4EOT
STR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 4EOT
REM 4EOT
REM 4EOT
REM 4EOT
LOC AlphaHelix ASP 229 A SER 234 A 4EOT
LOC AlphaHelix VAL 237 A LEU 244 A 4EOT
LOC AlphaHelix LYS 249 A LYS 316 A 4EOT
LOC AlphaHelix ASP 229 B SER 234 B 4EOT
LOC AlphaHelix VAL 237 B LEU 244 B 4EOT
LOC AlphaHelix LYS 249 B LEU 317 B 4EOT
LOC TurnII LEU 244 A PHE 247 A 4EOT
LOC TurnII LEU 244 B PHE 247 B 4EOT
REM 4EOT
REM --------------- Detailed secondary structure assignment------------- 4EOT
REM 4EOT
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 4EOT
ASG ARG A 226 1 C Coil 360.00 -88.43 207.5 4EOT
ASG PHE A 227 2 C Coil -156.67 178.71 79.1 4EOT
ASG SER A 228 3 C Coil -100.60 159.41 67.0 4EOT
ASG ASP A 229 4 H AlphaHelix -67.34 -43.46 88.1 4EOT
ASG ASP A 230 5 H AlphaHelix -58.90 -42.82 77.7 4EOT
ASG GLN A 231 6 H AlphaHelix -73.37 -33.44 35.1 4EOT
ASG LEU A 232 7 H AlphaHelix -68.43 -22.28 32.3 4EOT
ASG VAL A 233 8 H AlphaHelix -95.91 -39.91 55.3 4EOT
ASG SER A 234 9 H AlphaHelix -74.12 -29.28 97.9 4EOT
ASG MET A 235 10 C Coil -56.06 144.95 47.9 4EOT
ASG SER A 236 11 C Coil -81.71 164.22 67.7 4EOT
ASG VAL A 237 12 H AlphaHelix -64.30 -37.63 93.0 4EOT
ASG ARG A 238 13 H AlphaHelix -65.19 -37.90 80.0 4EOT
ASG GLU A 239 14 H AlphaHelix -76.63 -42.46 79.8 4EOT
ASG LEU A 240 15 H AlphaHelix -63.34 -45.39 19.2 4EOT
ASG ASN A 241 16 H AlphaHelix -60.61 -45.06 84.4 4EOT
ASG ARG A 242 17 H AlphaHelix -66.04 -28.64 50.0 4EOT
ASG GLN A 243 18 H AlphaHelix -71.93 -26.72 115.5 4EOT
ASG LEU A 244 19 H AlphaHelix -113.96 30.30 28.3 4EOT
ASG ARG A 245 20 T Turn -71.83 113.95 142.8 4EOT
ASG GLY A 246 21 T Turn 119.23 -24.23 84.4 4EOT
ASG PHE A 247 22 T Turn -67.67 153.44 121.7 4EOT
ASG SER A 248 23 C Coil -64.74 158.79 75.5 4EOT
ASG LYS A 249 24 H AlphaHelix -60.90 -45.54 167.5 4EOT
ASG GLU A 250 25 H AlphaHelix -57.60 -42.69 73.1 4EOT
ASG GLU A 251 26 H AlphaHelix -69.34 -41.92 45.8 4EOT
ASG VAL A 252 27 H AlphaHelix -57.39 -52.02 36.9 4EOT
ASG ILE A 253 28 H AlphaHelix -59.61 -42.44 90.7 4EOT
ASG ARG A 254 29 H AlphaHelix -61.17 -48.85 81.6 4EOT
ASG LEU A 255 30 H AlphaHelix -63.73 -40.56 31.3 4EOT
ASG LYS A 256 31 H AlphaHelix -62.70 -42.43 55.2 4EOT
ASG GLN A 257 32 H AlphaHelix -63.93 -35.08 69.7 4EOT
ASG LYS A 258 33 H AlphaHelix -65.66 -39.11 51.5 4EOT
ASG ARG A 259 34 H AlphaHelix -64.13 -39.13 60.1 4EOT
ASG ARG A 260 35 H AlphaHelix -67.43 -43.85 146.8 4EOT
ASG THR A 261 36 H AlphaHelix -59.43 -51.91 84.6 4EOT
ASG LEU A 262 37 H AlphaHelix -57.67 -38.77 18.2 4EOT
ASG LYS A 263 38 H AlphaHelix -65.27 -47.02 19.6 4EOT
ASG ASN A 264 39 H AlphaHelix -59.39 -34.91 72.3 4EOT
ASG ARG A 265 40 H AlphaHelix -58.96 -46.63 139.3 4EOT
ASG GLY A 266 41 H AlphaHelix -77.12 -26.19 21.8 4EOT
ASG TYR A 267 42 H AlphaHelix -63.27 -49.56 129.1 4EOT
ASG ALA A 268 43 H AlphaHelix -63.03 -32.49 32.7 4EOT
ASG GLN A 269 44 H AlphaHelix -64.88 -42.06 123.9 4EOT
ASG SER A 270 45 H AlphaHelix -70.93 -40.97 77.5 4EOT
ASG CYS A 271 46 H AlphaHelix -59.85 -47.78 77.5 4EOT
ASG ARG A 272 47 H AlphaHelix -66.83 -33.74 124.2 4EOT
ASG PHE A 273 48 H AlphaHelix -64.28 -48.16 128.3 4EOT
ASG LYS A 274 49 H AlphaHelix -63.30 -36.53 50.8 4EOT
ASG ARG A 275 50 H AlphaHelix -63.61 -46.09 94.7 4EOT
ASG VAL A 276 51 H AlphaHelix -64.37 -47.70 64.5 4EOT
ASG GLN A 277 52 H AlphaHelix -59.34 -45.36 81.4 4EOT
ASG GLN A 278 53 H AlphaHelix -57.19 -42.35 80.8 4EOT
ASG ARG A 279 54 H AlphaHelix -63.07 -39.87 67.1 4EOT
ASG HIS A 280 55 H AlphaHelix -71.38 -34.65 112.7 4EOT
ASG ILE A 281 56 H AlphaHelix -62.12 -45.67 92.6 4EOT
ASG LEU A 282 57 H AlphaHelix -62.98 -43.50 33.1 4EOT
ASG GLU A 283 58 H AlphaHelix -64.16 -38.48 48.1 4EOT
ASG SER A 284 59 H AlphaHelix -66.07 -38.38 68.0 4EOT
ASG GLU A 285 60 H AlphaHelix -63.17 -45.97 68.6 4EOT
ASG LYS A 286 61 H AlphaHelix -67.09 -27.98 55.5 4EOT
ASG CYS A 287 62 H AlphaHelix -73.30 -37.41 68.3 4EOT
ASG GLN A 288 63 H AlphaHelix -68.66 -41.70 59.5 4EOT
ASG LEU A 289 64 H AlphaHelix -63.32 -48.42 20.8 4EOT
ASG GLN A 290 65 H AlphaHelix -60.15 -38.92 88.6 4EOT
ASG SER A 291 66 H AlphaHelix -65.70 -40.66 79.1 4EOT
ASG GLN A 292 67 H AlphaHelix -63.94 -42.56 56.4 4EOT
ASG VAL A 293 68 H AlphaHelix -59.98 -43.85 5.6 4EOT
ASG GLU A 294 69 H AlphaHelix -58.58 -43.04 101.6 4EOT
ASG GLN A 295 70 H AlphaHelix -59.59 -51.64 106.8 4EOT
ASG LEU A 296 71 H AlphaHelix -62.43 -41.04 7.4 4EOT
ASG LYS A 297 72 H AlphaHelix -57.71 -46.31 52.3 4EOT
ASG LEU A 298 73 H AlphaHelix -63.64 -31.57 116.4 4EOT
ASG GLU A 299 74 H AlphaHelix -72.17 -41.99 48.8 4EOT
ASG VAL A 300 75 H AlphaHelix -67.44 -30.40 32.3 4EOT
ASG GLY A 301 76 H AlphaHelix -71.41 -27.63 45.5 4EOT
ASG ARG A 302 77 H AlphaHelix -82.26 -41.10 131.0 4EOT
ASG LEU A 303 78 H AlphaHelix -68.76 -38.96 3.8 4EOT
ASG ALA A 304 79 H AlphaHelix -65.90 -38.95 25.5 4EOT
ASG LYS A 305 80 H AlphaHelix -66.76 -43.82 81.7 4EOT
ASG GLU A 306 81 H AlphaHelix -62.51 -46.91 51.3 4EOT
ASG ARG A 307 82 H AlphaHelix -60.05 -41.88 74.2 4EOT
ASG ASP A 308 83 H AlphaHelix -71.71 -34.93 90.4 4EOT
ASG LEU A 309 84 H AlphaHelix -63.09 -44.44 70.0 4EOT
ASG TYR A 310 85 H AlphaHelix -67.72 -29.90 54.7 4EOT
ASG LYS A 311 86 H AlphaHelix -61.03 -46.97 21.7 4EOT
ASG GLU A 312 87 H AlphaHelix -63.70 -44.52 67.3 4EOT
ASG LYS A 313 88 H AlphaHelix -66.38 -34.21 47.7 4EOT
ASG TYR A 314 89 H AlphaHelix -75.85 -47.22 97.7 4EOT
ASG GLU A 315 90 H AlphaHelix -59.54 -35.38 78.9 4EOT
ASG LYS A 316 91 H AlphaHelix -64.05 -58.02 87.7 4EOT
ASG LEU A 317 92 C Coil -74.90 360.00 83.6 4EOT
ASG PHE B 227 1 C Coil 360.00 -45.21 199.9 4EOT
ASG SER B 228 2 C Coil -77.24 165.75 32.0 4EOT
ASG ASP B 229 3 H AlphaHelix -61.02 -42.79 78.7 4EOT
ASG ASP B 230 4 H AlphaHelix -66.76 -40.04 94.9 4EOT
ASG GLN B 231 5 H AlphaHelix -73.04 -35.63 87.8 4EOT
ASG LEU B 232 6 H AlphaHelix -66.23 -38.50 3.4 4EOT
ASG VAL B 233 7 H AlphaHelix -81.74 -17.61 45.5 4EOT
ASG SER B 234 8 H AlphaHelix -88.32 -45.51 77.4 4EOT
ASG MET B 235 9 C Coil -72.85 147.79 42.9 4EOT
ASG SER B 236 10 C Coil -74.10 161.26 54.5 4EOT
ASG VAL B 237 11 H AlphaHelix -63.93 -24.65 76.1 4EOT
ASG ARG B 238 12 H AlphaHelix -68.86 -48.85 71.6 4EOT
ASG GLU B 239 13 H AlphaHelix -68.65 -27.00 64.7 4EOT
ASG LEU B 240 14 H AlphaHelix -68.90 -51.90 10.8 4EOT
ASG ASN B 241 15 H AlphaHelix -57.84 -33.37 88.6 4EOT
ASG ARG B 242 16 H AlphaHelix -70.11 -42.70 71.6 4EOT
ASG GLN B 243 17 H AlphaHelix -75.29 -25.40 79.4 4EOT
ASG LEU B 244 18 H AlphaHelix -79.09 -4.04 14.7 4EOT
ASG ARG B 245 19 T Turn -67.90 124.86 72.6 4EOT
ASG GLY B 246 20 T Turn 101.59 19.12 85.3 4EOT
ASG PHE B 247 21 T Turn -122.62 150.09 114.1 4EOT
ASG SER B 248 22 C Coil -63.32 145.87 70.2 4EOT
ASG LYS B 249 23 H AlphaHelix -58.41 -27.39 80.9 4EOT
ASG GLU B 250 24 H AlphaHelix -64.20 -46.16 92.2 4EOT
ASG GLU B 251 25 H AlphaHelix -71.27 -37.08 71.0 4EOT
ASG VAL B 252 26 H AlphaHelix -61.93 -43.79 37.0 4EOT
ASG ILE B 253 27 H AlphaHelix -72.22 -26.73 90.3 4EOT
ASG ARG B 254 28 H AlphaHelix -73.43 -39.58 64.1 4EOT
ASG LEU B 255 29 H AlphaHelix -73.77 -38.78 40.9 4EOT
ASG LYS B 256 30 H AlphaHelix -62.57 -36.63 45.0 4EOT
ASG GLN B 257 31 H AlphaHelix -80.51 -20.87 121.1 4EOT
ASG LYS B 258 32 H AlphaHelix -72.11 -36.19 78.5 4EOT
ASG ARG B 259 33 H AlphaHelix -65.02 -44.52 42.7 4EOT
ASG ARG B 260 34 H AlphaHelix -59.29 -41.95 143.6 4EOT
ASG THR B 261 35 H AlphaHelix -61.35 -47.90 73.8 4EOT
ASG LEU B 262 36 H AlphaHelix -62.63 -34.29 17.0 4EOT
ASG LYS B 263 37 H AlphaHelix -73.85 -37.80 51.7 4EOT
ASG ASN B 264 38 H AlphaHelix -61.82 -29.43 69.0 4EOT
ASG ARG B 265 39 H AlphaHelix -62.61 -41.39 157.8 4EOT
ASG GLY B 266 40 H AlphaHelix -72.48 -36.36 38.1 4EOT
ASG TYR B 267 41 H AlphaHelix -64.05 -35.43 118.1 4EOT
ASG ALA B 268 42 H AlphaHelix -66.75 -41.63 30.7 4EOT
ASG GLN B 269 43 H AlphaHelix -60.69 -43.78 62.2 4EOT
ASG SER B 270 44 H AlphaHelix -65.39 -42.64 81.6 4EOT
ASG CYS B 271 45 H AlphaHelix -60.48 -46.59 65.2 4EOT
ASG ARG B 272 46 H AlphaHelix -66.31 -40.20 141.5 4EOT
ASG PHE B 273 47 H AlphaHelix -64.28 -43.60 145.2 4EOT
ASG LYS B 274 48 H AlphaHelix -60.23 -43.45 127.2 4EOT
ASG ARG B 275 49 H AlphaHelix -56.86 -37.26 85.1 4EOT
ASG VAL B 276 50 H AlphaHelix -69.43 -51.36 61.0 4EOT
ASG GLN B 277 51 H AlphaHelix -56.46 -40.07 50.0 4EOT
ASG GLN B 278 52 H AlphaHelix -67.19 -33.22 106.3 4EOT
ASG ARG B 279 53 H AlphaHelix -66.14 -37.39 149.8 4EOT
ASG HIS B 280 54 H AlphaHelix -73.37 -44.80 96.9 4EOT
ASG ILE B 281 55 H AlphaHelix -67.03 -23.24 101.4 4EOT
ASG LEU B 282 56 H AlphaHelix -75.37 -52.11 34.4 4EOT
ASG GLU B 283 57 H AlphaHelix -63.02 -23.98 42.6 4EOT
ASG SER B 284 58 H AlphaHelix -82.96 -41.57 76.7 4EOT
ASG GLU B 285 59 H AlphaHelix -62.76 -31.70 76.9 4EOT
ASG LYS B 286 60 H AlphaHelix -61.21 -37.36 58.3 4EOT
ASG CYS B 287 61 H AlphaHelix -77.85 -34.01 74.0 4EOT
ASG GLN B 288 62 H AlphaHelix -69.77 -18.98 63.2 4EOT
ASG LEU B 289 63 H AlphaHelix -92.64 -42.82 10.8 4EOT
ASG GLN B 290 64 H AlphaHelix -57.87 -41.36 84.9 4EOT
ASG SER B 291 65 H AlphaHelix -68.06 -29.51 85.8 4EOT
ASG GLN B 292 66 H AlphaHelix -77.96 -41.90 83.6 4EOT
ASG VAL B 293 67 H AlphaHelix -57.71 -48.24 8.0 4EOT
ASG GLU B 294 68 H AlphaHelix -63.65 -33.97 78.4 4EOT
ASG GLN B 295 69 H AlphaHelix -69.96 -32.50 62.9 4EOT
ASG LEU B 296 70 H AlphaHelix -79.59 -34.93 25.9 4EOT
ASG LYS B 297 71 H AlphaHelix -63.07 -31.08 115.3 4EOT
ASG LEU B 298 72 H AlphaHelix -71.06 -34.45 90.5 4EOT
ASG GLU B 299 73 H AlphaHelix -69.11 -39.41 50.3 4EOT
ASG VAL B 300 74 H AlphaHelix -71.10 -27.09 21.0 4EOT
ASG GLY B 301 75 H AlphaHelix -70.15 -32.55 42.4 4EOT
ASG ARG B 302 76 H AlphaHelix -72.91 -41.99 63.5 4EOT
ASG LEU B 303 77 H AlphaHelix -72.51 -41.37 17.4 4EOT
ASG ALA B 304 78 H AlphaHelix -60.24 -43.84 27.9 4EOT
ASG LYS B 305 79 H AlphaHelix -65.44 -40.52 84.5 4EOT
ASG GLU B 306 80 H AlphaHelix -70.52 -32.23 28.1 4EOT
ASG ARG B 307 81 H AlphaHelix -69.48 -46.24 56.7 4EOT
ASG ASP B 308 82 H AlphaHelix -56.77 -39.06 64.0 4EOT
ASG LEU B 309 83 H AlphaHelix -59.97 -51.68 50.2 4EOT
ASG TYR B 310 84 H AlphaHelix -65.91 -39.48 96.4 4EOT
ASG LYS B 311 85 H AlphaHelix -66.63 -42.76 87.8 4EOT
ASG GLU B 312 86 H AlphaHelix -63.38 -39.00 137.0 4EOT
ASG LYS B 313 87 H AlphaHelix -70.23 -29.56 55.8 4EOT
ASG TYR B 314 88 H AlphaHelix -77.80 -51.59 61.9 4EOT
ASG GLU B 315 89 H AlphaHelix -61.17 -25.78 104.4 4EOT
ASG LYS B 316 90 H AlphaHelix -63.71 -37.22 84.9 4EOT
ASG LEU B 317 91 H AlphaHelix -87.36 2.14 71.9 4EOT
ASG ALA B 318 92 C Coil 55.27 360.00 101.5 4EOT