Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/1oct.std.txt Дата изменения: Sat Jan 22 02:37:25 2011 Дата индексирования: Fri Feb 11 21:06:05 2011 Кодировка: Поисковые слова: aurora

REM -------------------------------------------------------------------- 1OCT
REM 1OCT
REM STRIDE: Knowledge-based secondary structure assignment 1OCT
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1OCT
REM 1OCT
REM Residue accessible surface area calculation 1OCT
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1OCT
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1OCT
REM 1OCT
REM ------------------------ General information ----------------------- 1OCT
REM 1OCT
HDR TRANSCRIPTION/DNA 09-MAY-94 1OCT 1OCT
CMP MOL_ID: 1; 1OCT
CMP MOLECULE: DNA (5'- 1OCT
CMP D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'); 1OCT
CMP CHAIN: A; 1OCT
CMP ENGINEERED: YES; 1OCT
CMP MOL_ID: 2; 1OCT
CMP MOLECULE: DNA (5'- 1OCT
CMP D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3'); 1OCT
CMP CHAIN: B; 1OCT
CMP ENGINEERED: YES; 1OCT
CMP MOL_ID: 3; 1OCT
CMP MOLECULE: PROTEIN (OCT-1 POU DOMAIN); 1OCT
CMP CHAIN: C 1OCT
SRC MOL_ID: 1; 1OCT
SRC SYNTHETIC: YES; 1OCT
SRC MOL_ID: 2; 1OCT
SRC SYNTHETIC: YES; 1OCT
SRC MOL_ID: 3; 1OCT
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1OCT
SRC ORGANISM_COMMON: HUMAN; 1OCT
SRC ORGANISM_TAXID: 9606 1OCT
AUT J.D.KLEMM,M.A.ROULD,R.AURORA,W.HERR,C.O.PABO 1OCT
REM 1OCT
REM -------------------- Secondary structure summary ------------------- 1OCT
REM 1OCT
CHN /data/npidb/pdb/pdb_new/all/pdb1oct.pdb C 1OCT
REM 1OCT
REM . . . . . 1OCT
SEQ 1 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 50 1OCT
STR HHHHHHHHHHHHHHHHHH HHHHHHHHHHTTT HHHHHHHHH 1OCT
REM 1OCT
REM . . . . . 1OCT
SEQ 51 LSFKNMCKLKPLLEKWLNDAERKKRTSIETNIRVALEKSFLENQKPTSEE 100 1OCT
STR HHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHTTTT HHH 1OCT
REM 1OCT
REM . . . 1OCT
SEQ 101 ITMIADQLNMEKEVIRVWFCNRRQKEKRINP 131 1OCT
STR HHHHHHHHTT HHHHHHHHHHHHHHHHH 1OCT
REM 1OCT
REM 1OCT
REM 1OCT
LOC AlphaHelix LEU 6 C LEU 23 C 1OCT
LOC AlphaHelix GLN 27 C LYS 36 C 1OCT
LOC AlphaHelix GLN 44 C ALA 52 C 1OCT
LOC AlphaHelix PHE 57 C GLU 75 C 1OCT
LOC AlphaHelix THR 110 C GLU 122 C 1OCT
LOC AlphaHelix SER 128 C LEU 138 C 1OCT
LOC AlphaHelix LYS 142 C ARG 158 C 1OCT
LOC TurnIV LYS 36 C GLY 39 C 1OCT
LOC TurnVIII ASN 123 C PRO 126 C 1OCT
LOC GammaClassic LEU 138 C MET 140 C 1OCT
REM 1OCT
REM --------------- Detailed secondary structure assignment------------- 1OCT
REM 1OCT
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1OCT
ASG ASP C 5 1 C Coil 360.00 -177.14 126.0 1OCT
ASG LEU C 6 2 H AlphaHelix -45.21 -84.59 127.4 1OCT
ASG GLU C 7 3 H AlphaHelix -48.64 -45.97 125.0 1OCT
ASG GLU C 8 4 H AlphaHelix -39.66 -46.82 100.9 1OCT
ASG LEU C 9 5 H AlphaHelix -76.86 -38.17 14.4 1OCT
ASG GLU C 10 6 H AlphaHelix -49.61 -49.57 84.3 1OCT
ASG GLN C 11 7 H AlphaHelix -72.06 -56.66 93.6 1OCT
ASG PHE C 12 8 H AlphaHelix -43.76 -43.77 13.7 1OCT
ASG ALA C 13 9 H AlphaHelix -54.56 -53.02 0.0 1OCT
ASG LYS C 14 10 H AlphaHelix -60.07 -63.75 119.9 1OCT
ASG THR C 15 11 H AlphaHelix -50.20 -37.55 50.5 1OCT
ASG PHE C 16 12 H AlphaHelix -60.56 -44.56 0.0 1OCT
ASG LYS C 17 13 H AlphaHelix -59.44 -40.13 104.8 1OCT
ASG GLN C 18 14 H AlphaHelix -65.08 -68.87 121.4 1OCT
ASG ARG C 19 15 H AlphaHelix -42.67 -50.36 101.3 1OCT
ASG ARG C 20 16 H AlphaHelix -51.59 -56.02 20.6 1OCT
ASG ILE C 21 17 H AlphaHelix -70.01 -37.32 94.8 1OCT
ASG LYS C 22 18 H AlphaHelix -57.13 -51.00 80.0 1OCT
ASG LEU C 23 19 H AlphaHelix -62.90 6.40 66.0 1OCT
ASG GLY C 24 20 C Coil 65.57 61.53 54.8 1OCT
ASG PHE C 25 21 C Coil -141.76 122.71 69.1 1OCT
ASG THR C 26 22 C Coil -80.03 163.19 70.2 1OCT
ASG GLN C 27 23 H AlphaHelix -63.36 -28.76 31.4 1OCT
ASG GLY C 28 24 H AlphaHelix -62.72 -41.91 34.1 1OCT
ASG ASP C 29 25 H AlphaHelix -68.68 -59.37 72.2 1OCT
ASG VAL C 30 26 H AlphaHelix -41.84 -41.44 0.0 1OCT
ASG GLY C 31 27 H AlphaHelix -65.65 -57.19 0.0 1OCT
ASG LEU C 32 28 H AlphaHelix -67.05 -18.93 109.4 1OCT
ASG ALA C 33 29 H AlphaHelix -67.74 -41.38 32.8 1OCT
ASG MET C 34 30 H AlphaHelix -67.48 -19.11 4.8 1OCT
ASG GLY C 35 31 H AlphaHelix -63.15 -57.86 11.4 1OCT
ASG LYS C 36 32 H AlphaHelix -81.15 37.90 97.0 1OCT
ASG LEU C 37 33 T Turn -146.09 -19.44 67.2 1OCT
ASG TYR C 38 34 T Turn -148.13 -2.64 101.6 1OCT
ASG GLY C 39 35 T Turn 104.17 -71.93 63.3 1OCT
ASG ASN C 40 36 C Coil -82.19 122.67 64.1 1OCT
ASG ASP C 41 37 C Coil -84.68 162.29 80.6 1OCT
ASG PHE C 42 38 C Coil -120.89 121.26 42.5 1OCT
ASG SER C 43 39 C Coil -55.72 161.15 64.4 1OCT
ASG GLN C 44 40 H AlphaHelix -58.93 -35.09 97.9 1OCT
ASG THR C 45 41 H AlphaHelix -53.85 -51.81 63.0 1OCT
ASG THR C 46 42 H AlphaHelix -60.88 -38.46 36.3 1OCT
ASG ILE C 47 43 H AlphaHelix -65.31 -48.06 2.2 1OCT
ASG SER C 48 44 H AlphaHelix -58.28 -49.87 42.1 1OCT
ASG ARG C 49 45 H AlphaHelix -61.05 -35.62 115.5 1OCT
ASG PHE C 50 46 H AlphaHelix -67.05 -39.67 0.8 1OCT
ASG GLU C 51 47 H AlphaHelix -66.23 -41.62 13.6 1OCT
ASG ALA C 52 48 H AlphaHelix -80.33 5.43 70.6 1OCT
ASG LEU C 53 49 C Coil 57.19 30.42 71.8 1OCT
ASG ASN C 54 50 C Coil -95.82 51.93 101.5 1OCT
ASG LEU C 55 51 C Coil -148.66 166.75 47.6 1OCT
ASG SER C 56 52 C Coil -68.03 148.34 71.2 1OCT
ASG PHE C 57 53 H AlphaHelix -49.98 -39.81 124.5 1OCT
ASG LYS C 58 54 H AlphaHelix -66.33 -48.32 68.8 1OCT
ASG ASN C 59 55 H AlphaHelix -64.18 -31.56 50.2 1OCT
ASG MET C 60 56 H AlphaHelix -68.46 -41.98 8.0 1OCT
ASG CYS C 61 57 H AlphaHelix -71.77 -28.02 57.0 1OCT
ASG LYS C 62 58 H AlphaHelix -74.67 -38.62 128.4 1OCT
ASG LEU C 63 59 H AlphaHelix -81.84 -30.38 2.6 1OCT
ASG LYS C 64 60 H AlphaHelix -44.40 -62.17 24.3 1OCT
ASG PRO C 65 61 H AlphaHelix -44.05 -69.83 65.1 1OCT
ASG LEU C 66 62 H AlphaHelix -37.34 -51.05 60.8 1OCT
ASG LEU C 67 63 H AlphaHelix -68.42 -59.57 2.2 1OCT
ASG GLU C 68 64 H AlphaHelix -40.71 -44.26 78.4 1OCT
ASG LYS C 69 65 H AlphaHelix -57.83 -64.53 80.5 1OCT
ASG TRP C 70 66 H AlphaHelix -43.51 -44.76 10.6 1OCT
ASG LEU C 71 67 H AlphaHelix -54.55 -64.31 1.8 1OCT
ASG ASN C 72 68 H AlphaHelix -58.40 -53.03 82.3 1OCT
ASG ASP C 73 69 H AlphaHelix -52.13 -39.05 109.4 1OCT
ASG ALA C 74 70 H AlphaHelix -77.94 -22.32 36.9 1OCT
ASG GLU C 75 71 H AlphaHelix -66.06 360.00 116.6 1OCT
ASG ARG C 102 72 C Coil 360.00 144.30 251.1 1OCT
ASG LYS C 103 73 C Coil -72.30 144.75 116.2 1OCT
ASG LYS C 104 74 C Coil -66.12 141.12 84.2 1OCT
ASG ARG C 105 75 C Coil -63.24 111.30 245.5 1OCT
ASG THR C 106 76 C Coil -70.13 123.52 50.2 1OCT
ASG SER C 107 77 C Coil -86.58 91.64 94.8 1OCT
ASG ILE C 108 78 C Coil -63.46 112.88 46.7 1OCT
ASG GLU C 109 79 C Coil -71.97 150.29 107.5 1OCT
ASG THR C 110 80 H AlphaHelix -43.46 -48.89 89.4 1OCT
ASG ASN C 111 81 H AlphaHelix -66.59 -40.44 122.6 1OCT
ASG ILE C 112 82 H AlphaHelix -67.34 -35.58 28.7 1OCT
ASG ARG C 113 83 H AlphaHelix -60.49 -40.39 137.1 1OCT
ASG VAL C 114 84 H AlphaHelix -63.90 -56.68 88.4 1OCT
ASG ALA C 115 85 H AlphaHelix -53.71 -37.42 41.7 1OCT
ASG LEU C 116 86 H AlphaHelix -63.14 -45.34 2.2 1OCT
ASG GLU C 117 87 H AlphaHelix -64.37 -39.90 55.7 1OCT
ASG LYS C 118 88 H AlphaHelix -60.30 -50.48 52.7 1OCT
ASG SER C 119 89 H AlphaHelix -57.31 -47.27 29.2 1OCT
ASG PHE C 120 90 H AlphaHelix -59.01 -37.60 2.6 1OCT
ASG LEU C 121 91 H AlphaHelix -63.75 -25.79 128.9 1OCT
ASG GLU C 122 92 H AlphaHelix -86.57 -50.76 179.0 1OCT
ASG ASN C 123 93 T Turn -136.51 112.37 62.1 1OCT
ASG GLN C 124 94 T Turn -67.66 -48.84 100.3 1OCT
ASG LYS C 125 95 T Turn -105.72 83.58 150.1 1OCT
ASG PRO C 126 96 T Turn -68.30 157.33 13.3 1OCT
ASG THR C 127 97 C Coil -86.98 151.67 65.5 1OCT
ASG SER C 128 98 H AlphaHelix -44.66 -52.33 82.2 1OCT
ASG GLU C 129 99 H AlphaHelix -62.40 -36.38 160.0 1OCT
ASG GLU C 130 100 H AlphaHelix -63.44 -43.20 80.2 1OCT
ASG ILE C 131 101 H AlphaHelix -59.77 -47.81 10.2 1OCT
ASG THR C 132 102 H AlphaHelix -56.28 -49.46 74.2 1OCT
ASG MET C 133 103 H AlphaHelix -52.63 -42.86 139.3 1OCT
ASG ILE C 134 104 H AlphaHelix -70.10 -44.38 26.1 1OCT
ASG ALA C 135 105 H AlphaHelix -57.18 -35.26 8.1 1OCT
ASG ASP C 136 106 H AlphaHelix -65.75 -49.70 136.0 1OCT
ASG GLN C 137 107 H AlphaHelix -77.15 -19.20 162.5 1OCT
ASG LEU C 138 108 H AlphaHelix -109.31 22.32 22.5 1OCT
ASG ASN C 139 109 T Turn 51.81 -3.03 134.4 1OCT
ASG MET C 140 110 T Turn -98.03 163.77 37.0 1OCT
ASG GLU C 141 111 C Coil -59.30 138.01 99.9 1OCT
ASG LYS C 142 112 H AlphaHelix -50.72 -51.34 93.9 1OCT
ASG GLU C 143 113 H AlphaHelix -51.45 -46.75 74.7 1OCT
ASG VAL C 144 114 H AlphaHelix -57.91 -23.99 18.2 1OCT
ASG ILE C 145 115 H AlphaHelix -80.59 -45.97 2.4 1OCT
ASG ARG C 146 116 H AlphaHelix -57.58 -44.19 100.0 1OCT
ASG VAL C 147 117 H AlphaHelix -62.41 -41.72 52.9 1OCT
ASG TRP C 148 118 H AlphaHelix -62.13 -40.99 17.7 1OCT
ASG PHE C 149 119 H AlphaHelix -66.93 -27.35 0.6 1OCT
ASG CYS C 150 120 H AlphaHelix -79.78 -35.45 47.3 1OCT
ASG ASN C 151 121 H AlphaHelix -71.29 -38.37 87.5 1OCT
ASG ARG C 152 122 H AlphaHelix -64.63 -40.78 20.2 1OCT
ASG ARG C 153 123 H AlphaHelix -65.32 -27.42 59.9 1OCT
ASG GLN C 154 124 H AlphaHelix -75.62 -42.85 41.0 1OCT
ASG LYS C 155 125 H AlphaHelix -62.17 -38.97 63.2 1OCT
ASG GLU C 156 126 H AlphaHelix -61.11 -38.03 49.5 1OCT
ASG LYS C 157 127 H AlphaHelix -64.97 -35.99 137.4 1OCT
ASG ARG C 158 128 H AlphaHelix -73.59 -11.77 196.7 1OCT
ASG ILE C 159 129 C Coil -100.42 -35.88 105.1 1OCT
ASG ASN C 160 130 C Coil -137.12 81.85 108.7 1OCT
ASG PRO C 161 131 C Coil -57.06 360.00 153.4 1OCT