Our projects
Data Base
- NPIDB
a database of structures of DNA-protein and
RNA-protein complexes.
- Old version of NPIDB
- PLANdbAffy
a probe-level annotation database for Affymetrix expression microarrays.
Tools
- CluD
a program for finding hydrophobic clusters in 3D structures of macromolecules
- ConClus
search of conserved hydrophobic clusters in aligned 3D structures of protein families
- SVETKA
a program for analysis of multiple alignments
- Nhunt
a program for search nucleotide database using nucleotide query
- NPG-explorer
a tool for aligning multiple genomes of closely related prokaryotes
- plot-hits
a tool for simultaneous vizualization of annotated genes and blast-hits
in contigs of de novo genome assembly and annotation
- wLake
a program for detecting structural water molecules
- MALAKITE
a program for automatic detection of aligned blocks in a multiple protein alignment.
- Blocks_3d/pair-cores
a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains.
- ProtOn
tools for automatic description of all-β and
α/β protein structures, include detectors of β-sheets,
architectures and structural motifs.
- Gcore
geometrical core for a family of protein 3D structures
- Lcore
geometrical core for a family of 3D structures of macromolecular complexes
- StructAlign
structural alignment of two complexes of protein with double-stranded DNA
- MTpro
automatic classification of an input sequence of DNA methyltransferase according to
classification
by methylation type, motif sequence and restriction-modification system type
- Mini tools
Bioinformatics portal of A.N.Belozersky Institute
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