Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/1m5p.pdb1.pdb.txt Дата изменения: Fri Mar 22 13:52:12 2013 Дата индексирования: Fri Feb 28 19:17:51 2014 Кодировка: Поисковые слова: m 43

/pdb/1m5p.pdb1.pdb
1m5p.pdb1.out
2 # duplex
49 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
1 111 0 # 1 | ...1>A:...1_:[..G]G-----C[..C]:..91_:B<...1 1.38 0.69 43.68 9.79 2.96
2 110 0 # 2 | ...1>A:...2_:[..G]G-----C[..C]:..90_:B<...1 0.99 0.29 27.18 8.86 -2.06
3 109 0 # 3 | ...1>A:...3_:[..C]C-----G[..G]:..89_:B<...1 1.06 0.67 23.85 9.17 -1.41
4 108 0 # 4 | ...1>A:...4_:[..C]C-----G[..G]:..88_:B<...1 1.73 1.47 14.21 9.22 0.38
5 107 0 # 5 | ...1>A:...5_:[..A]A-----U[..U]:..87_:B<...1 0.73 0.01 7.52 8.96 -1.87
6 106 0 # 6 | ...1>A:...6_:[..C]C-----G[..G]:..86_:B<...1 1.59 0.32 27.37 8.97 0.60
7 105 0 # 7 | ...1>A:...7_:[..C]C-----G[..G]:..85_:B<...1 0.86 0.13 8.43 8.84 -3.46
8 34 0 # 8 | ...1>A:...8_:[..U]U-----A[..A]:..14_:B<...1 0.86 0.41 23.89 9.67 0.88
9 33 0 # 9 | ...1>A:...9_:[..G]G-----C[..C]:..13_:B<...1 0.42 0.11 13.32 9.00 -3.69
10 32 0 # 10 | ...1>A:..10_:[..A]A-----U[..U]:..12_:B<...1 0.50 0.29 12.24 9.06 -3.32
11 31 0 # 11 | ...1>A:..11_:[..C]C-----G[..G]:..11_:B<...1 0.64 0.05 3.69 8.79 -4.07
12 29 0 # 12 | ...1>A:..12_:[..A]A-*---A[..A]:...9_:B<...1 8.49 0.21 8.25 8.69 9.32
13 28 0 # 13 | ...1>M:..14_:[..U]U-*---G[..G]:...8_:B<...1 7.80 0.62 14.33 10.09 8.76
14 27 0 # 14 | ...1>M:..15_:[..C]C-*---A[..A]:...7_:B<...1 2.23 1.22 19.77 9.95 5.65
15 26 0 # 15 | ...1>M:..16_:[..C]C-----G[..G]:...6_:B<...1 2.15 1.19 25.03 9.08 2.79
16 25 0 # 16 | ...1>M:..17_:[..U]U-----A[..A]:...5_:B<...1 0.56 0.43 6.24 8.59 -3.27
17 24 0 # 17 | ...1>M:..18_:[..C]C-----G[..G]:...4_:B<...1 0.87 0.32 13.83 8.77 -2.79
18 23 0 # 18 | ...1>M:..19_:[..U]U-----A[..A]:...3_:B<...1 0.26 0.19 12.32 8.94 -3.74
19 22 0 # 19 | ...1>M:..20_:[..C]C-----G[..G]:...2_:B<...1 1.12 0.66 9.86 9.21 -2.06
20 21 9 # 20 x ...1>M:..21_:[..C]C-----G[..G]:...1_:B<...1 0.27 0.18 6.05 8.96 -4.07
46 75 0 # 21 | ...1>B:..26_:[..A]A-*---G[..G]:..55_:B<...1 1.76 0.65 18.62 10.70 0.99
47 74 0 # 22 | ...1>B:..27_:[..C]C-----G[..G]:..54_:B<...1 0.23 0.17 24.06 8.94 -3.24
48 73 0 # 23 | ...1>B:..28_:[..A]A-----U[..U]:..53_:B<...1 0.28 0.19 9.60 8.70 -3.87
49 72 0 # 24 | ...1>B:..29_:[..C]C-----G[..G]:..52_:B<...1 0.26 0.02 17.42 8.85 -3.82
50 71 0 # 25 | ...1>B:..30_:[..C]C-----G[..G]:..51_:B<...1 0.68 0.65 13.50 8.87 -2.34
51 70 0 # 26 | ...1>B:..31_:[..A]A-----U[..U]:..50_:B<...1 0.67 0.12 13.92 8.86 -3.40
52 69 0 # 27 | ...1>B:..32_:[..A]A-----U[..U]:..49_:B<...1 0.51 0.19 20.71 8.77 -3.08
53 68 0 # 28 | ...1>B:..33_:[..C]C-----G[..G]:..48_:B<...1 0.65 0.52 22.97 8.97 -2.17
54 67 0 # 29 | ...1>B:..34_:[..C]C-----G[..G]:..47_:B<...1 0.46 0.35 17.72 8.96 -2.96
55 66 9 # 30 x ...1>B:..35_:[..C]C-----G[..G]:..46_:B<...1 0.59 0.51 6.86 8.86 -3.05
63 64 1 # 31 + ...1>B:..43_:[..U]U-**+-C[..C]:..44_:B<...1 7.32 0.56 36.92 6.72 9.28
30 45 0 # 32 | ...1>B:..10_:[..A]A-**--C[..C]:..25_:B<...1 7.02 2.05 37.34 6.81 11.99
77 44 0 # 33 | ...1>B:..57_:[..A]A-**--A[..A]:..24_:B<...1 6.20 0.27 10.12 9.47 6.24
79 43 0 # 34 | ...1>B:..59_:[..A]A-**--A[..A]:..23_:B<...1 4.19 0.90 26.13 9.76 4.29
80 42 0 # 35 | ...1>B:..60_:[..U]U-**--A[..A]:..22_:B<...1 4.75 0.06 2.14 6.92 1.97
82 41 0 # 36 | ...1>B:..62_:[..A]A-*---G[..G]:..21_:B<...1 8.27 0.07 8.47 8.47 5.83
83 40 0 # 37 | ...1>B:..63_:[..C]C-*---A[..A]:..20_:B<...1 2.53 0.49 15.48 9.34 3.27
84 39 0 # 38 | ...1>B:..64_:[..C]C-----G[..G]:..19_:B<...1 1.08 0.09 6.84 8.77 -3.40
85 38 0 # 39 | ...1>B:..65_:[..U]U-----A[..A]:..18_:B<...1 0.61 0.38 6.69 9.09 -1.30
86 37 0 # 40 | ...1>B:..66_:[..G]G-----C[..C]:..17_:B<...1 0.24 0.15 8.89 8.93 -4.03
87 36 0 # 41 | ...1>B:..67_:[..G]G-----C[..C]:..16_:B<...1 1.72 0.23 14.38 9.26 -0.10
88 35 0 # 42 | ...1>B:..68_:[..U]U-----A[..A]:..15_:B<...1 0.62 0.36 6.24 8.93 -3.35
89 104 0 # 43 | ...1>B:..69_:[..A]A-----U[..U]:..84_:B<...1 0.76 0.02 16.64 9.29 -3.37
90 103 0 # 44 | ...1>B:..70_:[..C]C-----G[..G]:..83_:B<...1 1.54 0.53 28.69 9.07 1.04
91 102 0 # 45 | ...1>B:..71_:[..G]G-----C[..C]:..82_:B<...1 0.69 0.17 15.92 8.92 -1.17
92 101 0 # 46 | ...1>B:..72_:[..G]G-*---U[..U]:..81_:B<...1 2.07 0.74 22.94 8.40 1.70
93 100 0 # 47 | ...1>B:..73_:[..G]G-**+-U[..U]:..80_:B<...1 2.05 0.18 23.68 8.44 2.59
94 99 0 # 48 | ...1>B:..74_:[..G]G-*---C[..C]:..79_:B<...1 2.67 0.16 23.00 9.03 3.14
95 98 0 # 49 | ...1>B:..75_:[..G]G-*---A[..A]:..78_:B<...1 8.69 0.38 32.98 8.37 10.10
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 15 non-Watson-Crick base-pairs, and 4 helices (1 isolated bp)
##### Helix #1 (20): 1 - 20 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (10): 21 - 30
##### Helix #3 (1): 31
##### Helix #4 (18): 32 - 49 ***broken O3'[i] to P[i+1] linkage***