Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1p4e.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 20:04:06 2013 Дата индексирования: Fri Feb 28 20:55:30 2014 Кодировка: Поисковые слова: m 43

# pfam_scan.pl, run at Thu May 16 20:04:01 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1p4e.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1p4e_A 43 124 43 124 PF03930.9 Flp_N Domain 1 82 82 96.3 6.3e-28 1 No_clan
#HMM matkklteiKrsTFtkYrreiskslqydvssktvsFeYhlkkaqeLkegLekaikpyeFeikskkkvtdmkellsslelkke
#MATCH m+t+++t+iKr+TF++Y+++is+sl++d+++k+++F+Y+++ka++L+++L+k+i+++eF+i ++d+++++ssl+l++e
#PP 89****************************************************************************9986
#SEQ MITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFE
#CS HHHHTT---BHHHHHHHHHHHHHH-EEETTTTEEEEEES-S-HHHHHHHHHHHSTTSEEEESTTXSX--HHHHHHHHHHHHH
1p4e_A 127 357 126 358 PF05202.7 Flp_C Family 2 243 244 299.0 2e-89 1 CL0382
#HMM nkvaeeltklvete.esiwklvekvlksieektrktstkaeykflllatflnCcRasDlknvDpktFeivknkflgrilralvtetktrkeRfiyFfpvkgriDpllaLddylretePvkk..srtsdeese.qeyqllrdslvrsydrflakeakesiFaiknGPksHlGRHlmasyLskkelgelvsslGnWsagkdeieskvArakYtHtkkeipdelFaflsgyykeseegklvlvlklvdn
#MATCH n+++++++k++ +e esiw+++ek+l+s+e+++r t+tk+ y+fl+latf+nC+R+sD+knvDpk+F++v+nk+lg+i+++lvtetkt+++R+iyFf+++griDpl++Ld++lr++ePv k +rt++++s+ qeyqll+d+lvrsy+++l+k+a+++iFaiknGPksH+GRHlm+s+Ls+k l+el++++Gn+s + + ++ipd++Fa++s+yy++++ +k++++lk+++n
#PP 78999****999999**********************************************************************************************************999*****9988*************************************************************8..2.............245789************************99876
#SEQ NSHSKKMLKALLSEgESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKrvNRTGNSSSNkQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFS--D-------------KQITAIPDHYFALVSRYYAYDPISKEMIALKDETN
#CS HHHHHHHHHHHHHS.S-HHHHHHHHHHHTTTT-SSHHHHHHHHHHHHHHHHHT--HHHHHTBEEEEEEEEEETTTEEEEEEEE-S-TTS--EEEEE---SSS--HHHHHHHHHTT---EE-..-BSTXXSSS.-SEESS-TTHHHHHHHHHHHC-SSGGGGSTTS-STTHHHHHHHHHHHHTT-HHHHHHHHT--...-TSS-HHHHHHTS-S-----HHHHHHHTTSEEEETTTTEEEE-S-SS-
1p4e_B 43 125 43 125 PF03930.9 Flp_N Domain 1 82 82 95.4 1.2e-27 1 No_clan
#HMM matkklteiKrsTFtkYrreiskslqydvssktvsFeYhlkkaqeLkegLekaikpyeFei..kskkkvtdmkellsslelkke
#MATCH m+t+++t+iKr+TF++Y+++is+sl++d+++k+++F+Y+++ka++L+++L+k+i+++eF+i + + ++d+++++ssl+l++e
#PP 89***********************************************************963333.37**********9986
#SEQ MITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIipYNGQ-KSDITDIVSSLQLQFE
#CS HHHHTT---BHHHHHHHHHHHHHH-EEETTTTEEEEEES-S-HHHHHHHHHHHSTTSEEEE..STTXSX--HHHHHHHHHHHHH
1p4e_B 128 362 127 363 PF05202.7 Flp_C Family 2 243 244 315.3 2e-94 1 CL0382
#HMM nkvaeeltklvete.esiwklvekvlksieektrktstkaeykflllatflnCcRasDlknvDpktFeivknkflgrilralvtetktrkeRfiyFfpvkgriDpllaLddylretePvkk..srtsdeese.qeyqllrdslvrsydrflakeakesiFaiknGPksHlGRHlmasyLskkelgelvsslGnWsagkdeieskvArakYtHtkkeipdelFaflsgyykeseegklvlvlklvdn
#MATCH n+++++++k++ +e esiw+++ek+l+s+e+++r t+tk+ y+fl+latf+nC+R+sD+knvDpk+F++v+nk+lg+i+++lvtetkt+++R+iyFf+++griDpl++Ld++lr++ePv k +rt++++s+ qeyqll+d+lvrsy+++l+k+a+++iFaiknGPksH+GRHlm+s+Ls+k l+el++++Gn+s +++YtH+ ++ipd++Fa++s+yy++++ +k++++lk+++n
#PP 78999****999999**********************************************************************************************************999*****9988*************************************************************8...........689********************************99876
#SEQ NSHSKKMLKALLSEgESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKrvNRTGNSSSNkQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFS-----------DTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETN
#CS HHHHHHHHHHHHHS.S-HHHHHHHHHHHTTTT-SSHHHHHHHHHHHHHHHHHT--HHHHHTBEEEEEEEEEETTTEEEEEEEE-S-TTS--EEEEE---SSS--HHHHHHHHHTT---EE-..-BSTXXSSS.-SEESS-TTHHHHHHHHHHHC-SSGGGGSTTS-STTHHHHHHHHHHHHTT-HHHHHHHHT--...-TSS-HHHHHHTS-S-----HHHHHHHTTSEEEETTTTEEEE-S-SS-
1p4e_C 43 122 43 122 PF03930.9 Flp_N Domain 1 82 82 90.5 4.1e-26 1 No_clan
#HMM matkklteiKrsTFtkYrreiskslqydvssktvsFeYhlkkaqeLkegLekaikpyeFeikskkkvtdmkellsslelkke
#MATCH m+t+++t+iKr+TF++Y+++is+sl++d+++k+++F+Y+++ka++L+++L+k+i+++eF+i d+++++ssl+l++e
#PP 89***********************************************************88765..**********9986
#SEQ MITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNS--DITDIVSSLQLQFE
#CS HHHHTT---BHHHHHHHHHHHHHH-EEETTTTEEEEEES-S-HHHHHHHHHHHSTTSEEEESTTXSX--HHHHHHHHHHHHH
1p4e_C 124 361 123 362 PF05202.7 Flp_C Family 2 243 244 322.9 1e-96 1 CL0382
#HMM nkvaeeltklvete.esiwklvekvlksieektrktstkaeykflllatflnCcRasDlknvDpktFeivknkflgrilralvtetktrkeRfiyFfpvkgriDpllaLddylretePvkksrtsdeeseqeyqllrdslvrsydrflakeakesiFaiknGPksHlGRHlmasyLskkelgelvsslGnWsagkdeieskvArakYtHtkkeipdelFaflsgyykeseegklvlvlklvdn
#MATCH n+++++++k++ +e esiw+++ek+l+s+e+++r t+tk+ y+fl+latf+nC+R+sD+knvDpk+F++v+nk+lg+i+++lvtetkt+++R+iyFf+++griDpl++Ld++lr++ePv k + + ++qeyqll+d+lvrsy+++l+k+a+++iFaiknGPksH+GRHlm+s+Ls+k l+el++++Gn+s d+++s+vAr++ tH+ ++ipd++Fa++s+yy++++ +k++++lk+++n
#PP 7899*****999999*********************************************************************************************************943.3445579************************************************************9...9********87.9******************************99876
#SEQ NSHSKKMLKALLSEgESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRV-NRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFS---DKRASAVARTT-THQITAIPDHYFALVSRYYAYDPISKEMIALKDETN
#CS HHHHHHHHHHHHHS.S-HHHHHHHHHHHTTTT-SSHHHHHHHHHHHHHHHHHT--HHHHHTBEEEEEEEEEETTTEEEEEEEE-S-TTS--EEEEE---SSS--HHHHHHHHHTT---EE--BSTXXSSS-SEESS-TTHHHHHHHHHHHC-SSGGGGSTTS-STTHHHHHHHHHHHHTT-HHHHHHHHT--...-TSS-HHHHHHTS-S-----HHHHHHHTTSEEEETTTTEEEE-S-SS-
1p4e_D 43 122 43 122 PF03930.9 Flp_N Domain 1 82 82 90.5 4.2e-26 1 No_clan
#HMM matkklteiKrsTFtkYrreiskslqydvssktvsFeYhlkkaqeLkegLekaikpyeFeikskkkvtdmkellsslelkke
#MATCH m+t+++t+iKr+TF++Y+++is+sl++d+++k+++F+Y+++ka++L+++L+k+i+++eF+i d+++++ssl+l++e
#PP 89***********************************************************88765..**********9986
#SEQ MITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNS--DITDIVSSLQLQFE
#CS HHHHTT---BHHHHHHHHHHHHHH-EEETTTTEEEEEES-S-HHHHHHHHHHHSTTSEEEESTTXSX--HHHHHHHHHHHHH
1p4e_D 126 365 125 366 PF05202.7 Flp_C Family 2 243 244 326.4 8.2e-98 1 CL0382
#HMM nkvaeeltklvete.esiwklvekvlksieektrktstkaeykflllatflnCcRasDlknvDpktFeivknkflgrilralvtetktrkeRfiyFfpvkgriDpllaLddylretePvkk..srtsdeeseqeyqllrdslvrsydrflakeakesiFaiknGPksHlGRHlmasyLskkelgelvsslGnWsagkdeieskvArakYtHtkkeipdelFaflsgyykeseegklvlvlklvdn
#MATCH n+++++++k++ +e esiw+++ek+l+s+e+++r t+tk+ y+fl+latf+nC+R+sD+knvDpk+F++v+nk+lg+i+++lvtetkt+++R+iyFf+++griDpl++Ld++lr++ePv k +rt++ +++qeyqll+d+lvrsy+++l+k+a+++iFaiknGPksH+GRHlm+s+Ls+k l+el++++Gn+s d+++s+vAr++ tH+ ++ipd++Fa++s+yy++++ +k++++lk+++n
#PP 78999****999999**********************************************************************************************************6444444.5579************************************************************9...9********87.9******************************99876
#SEQ NSHSKKMLKALLSEgESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKrvNRTGN-SNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFS---DKRASAVARTT-THQITAIPDHYFALVSRYYAYDPISKEMIALKDETN
#CS HHHHHHHHHHHHHS.S-HHHHHHHHHHHTTTT-SSHHHHHHHHHHHHHHHHHT--HHHHHTBEEEEEEEEEETTTEEEEEEEE-S-TTS--EEEEE---SSS--HHHHHHHHHTT---EE-..-BSTXXSSS-SEESS-TTHHHHHHHHHHHC-SSGGGGSTTS-STTHHHHHHHHHHHHTT-HHHHHHHHT--...-TSS-HHHHHHTS-S-----HHHHHHHTTSEEEETTTTEEEE-S-SS-