DotHelix: Motifs' Collection Map Results

References:

• Leontovich A.M.,Brodsky L.I., Gorbalenya A.E. Construction of the full local similarity map for two biopolymers, 1993, Biosystems, 30,57-63.[Word97 doc]
• Brodsky L.I., Ivanov V.V., Kalaidzidis Ya.L., Leontovich A.M., Nikolaev V.K., Feranchuk S.I., Drachev V.A. GeneBee-NET:Internet-based server for analyzing biopolymers structure, 1995, Biochemistry, 60, 8, 923-928. [Word97 doc]

Name	Value
Motif's power threshold - DotHelix	0
Motif's power threshold - noise upper bound	6
Motif's length threshold	7
Maximum number of motifs to plot	1000
Maximum number of motifs to output	50
Threshold of motif's homology percentage_	0.01
Accurate Dothelix	ON
Motif frequences recalc	ON
Normalize weight matrix	ON
Weight matrices	BLOSUM62

Sequences

>O77238


MSQHRLLEFSRFGGLRGYDIAQHMLTQQGAVSKLLGSLRPPGLIGGSKPKVATPTVVSKI
EQYKRENPTIFAWEIRERLISEGVCTNATAPSVSSINRILRNRAAERVATEFARTAAYGL
YPPPPHPYGSFTWHPAGNVPGGQGVPPPPPPSALWSVAAPTLANLPPSAASAVPVSTCGS
LSSAHLMAGGAGGTPTNRAISPGSGSHDTLESADENRHIDSDYLDDDDEPKFRRNRTTFS
PEQLEELEKEFDKSHYPCVSTRERLSSRTSLSEARVQVWFSNRRAKWRRHQRMNLLKRQR
SSPANPLHSQQSNDAPASSPTPSNHSSASTSAPVAPVPPPQQPLPLCGDHSPQGPPPSVL
LHPLHGPPGGHHHHHPLHLPTHPAALQLLSHYHQQQQQQQQQQHQQQQQQHHQQQQQLSP
SGCNPAANHLSMGGERSAFRSLVSSPSAPAFLGLARQYAVAASLTVAEEQRSRLHYSAGG
LGSGGEGTGPNTNTTQSGGSTMTVDNSSSDSDEEINVHDDSRW

>Q8TOM4_AG


VCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGLYPPPPYGGFPWPTPTHLWSPGQG
MPNMSQPGGSTTPGTIGSPGSGSHETLGSPDGNRLIGGTSRKTSSDVISQYISPNLCTHD
VFEPRISSLTTDIEGEDSNSLDGDQPKFRRNRTTFSPEQLEELEKEFDKSHYPCVSTRER
LASRTSLSEARVQVWFSNRRAKWRRHQRMNLLKRSTSPTT

BLOSUM62 AMINO ACIDS DISTANCE MATRIX A C D E F G H I K L M N P Q R S T V W Y A 8 C 4 13 D 2 1 10 E 3 0 6 9 F 2 2 1 1 10 G 4 1 3 2 1 10 H 2 1 3 4 3 2 12 I 3 3 1 1 4 0 1 8 K 3 1 3 5 1 2 3 1 9 L 3 3 0 1 4 0 1 6 2 8 M 3 3 1 2 4 1 2 5 3 6 9 N 2 1 5 4 1 4 5 1 4 1 2 10 P 3 1 3 3 0 2 2 1 3 1 2 2 11 Q 3 1 4 6 1 2 4 1 5 2 4 4 3 9 R 3 1 2 4 1 2 4 1 6 2 3 4 2 5 9 S 5 3 4 4 2 4 3 2 4 2 3 5 3 4 3 8 T 4 3 3 3 2 2 2 3 3 3 3 4 3 3 3 5 9 V 4 3 1 2 3 1 1 7 2 5 5 1 2 2 1 2 4 8 W 1 2 0 1 5 2 2 1 1 2 3 0 0 2 1 1 2 1 15 Y 2 2 1 2 7 1 6 3 2 3 3 2 1 3 2 2 2 3 6 11

BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix

  
Motif   1-1,    Power   16.4  Homology percent  95.9  Length     73
                      D D*PKFRRNRTTFSPEQLEELEKEFDKSHYPCVSTRERL+SRTSLSEARVQVWFSNRRA
>O77238      ( 226)   DDDEPKFRRNRTTFSPEQLEELEKEFDKSHYPCVSTRERLSSRTSLSEARVQVWFSNRRA
>Q8TOM4_AG   ( 142)   DGDQPKFRRNRTTFSPEQLEELEKEFDKSHYPCVSTRERLASRTSLSEARVQVWFSNRRA

                      KWRRHQRMNLLKR
>O77238      ( 286)   KWRRHQRMNLLKR
>Q8TOM4_AG   ( 202)   KWRRHQRMNLLKR


  
Motif   1-2,    Power   12.4  Homology percent  88.4  Length     43
                      VCTNATAPSVSSINRILRNRAAER.A.EFAR.A.YGLYPPPP*
>O77238      (  84)   VCTNATAPSVSSINRILRNRAAERVATEFARTAAYGLYPPPPH
>Q8TOM4_AG   (   1)   VCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGLYPPPPY