DotHelix: Motifs' Collection Map Results

References:

• Leontovich A.M.,Brodsky L.I., Gorbalenya A.E. Construction of the full local similarity map for two biopolymers, 1993, Biosystems, 30,57-63.[Word97 doc]
• Brodsky L.I., Ivanov V.V., Kalaidzidis Ya.L., Leontovich A.M., Nikolaev V.K., Feranchuk S.I., Drachev V.A. GeneBee-NET:Internet-based server for analyzing biopolymers structure, 1995, Biochemistry, 60, 8, 923-928. [Word97 doc]

Name	Value
Motif's power threshold - DotHelix	0
Motif's power threshold - noise upper bound	6
Motif's length threshold	7
Maximum number of motifs to plot	1000
Maximum number of motifs to output	50
Threshold of motif's homology percentage_	0.01
Accurate Dothelix	ON
Motif frequences recalc	ON
Normalize weight matrix	ON
Weight matrices	BLOSUM62

Sequences

>Q9GRX3


MMTTTTSQHH QHHPIMPPAM RPAPVQESPV SRPRAVYSID QILGNQHQIK RMYTPSEVLI      
THPHHGHPHH IHHLHSSNSN GSNHLSHQQQ QQHSQQQHHS QQQQQQQQLQ VQAKREDSPT      
NTDGGLDVDN DDELSSSLNN GHDLSDMERP RKVRRSRTTF TTFQLHQLER AFEKTQYPDV      
FTREDLAMRL DLSEARVQVW FQNRRAKWRK REKFMNQDKA GYLLPEQGLP EFPLGIPLPP      
HGLPGHPGSM QSEFWPPHFA LHQHFNPAAA AAAGLLPQHL MAPHYKLPNF HTLLSQYMGL      
SNLNGIFGAG AAAAAAAASA GYPQNLSLHA GLSAMSQVSP PCSNSSPRES PKLVPHPTPP      
HATPPASGNG GGGLLTGGLI STAAQSPNSA AGASSNASTP VSVVTKGED                  

>Q9GRX3_AG


KREGSPVEVHDNGVDVDNDDELPIMGDIDPMDNDPNDMGRPRKIRRSRTTFTTYQLHQLE
RAFEKTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKREKAMGRDTSAFLHHEQGM
PEFPLALPLTHNIPHPALPTEFWPPNFGLHPSLLPGAHGLLHPNVMPNYKIPNFHAILSQ
YMGLNNLFG

BLOSUM62 AMINO ACIDS DISTANCE MATRIX A C D E F G H I K L M N P Q R S T V W Y A 8 C 4 13 D 2 1 10 E 3 0 6 9 F 2 2 1 1 10 G 4 1 3 2 1 10 H 2 1 3 4 3 2 12 I 3 3 1 1 4 0 1 8 K 3 1 3 5 1 2 3 1 9 L 3 3 0 1 4 0 1 6 2 8 M 3 3 1 2 4 1 2 5 3 6 9 N 2 1 5 4 1 4 5 1 4 1 2 10 P 3 1 3 3 0 2 2 1 3 1 2 2 11 Q 3 1 4 6 1 2 4 1 5 2 4 4 3 9 R 3 1 2 4 1 2 4 1 6 2 3 4 2 5 9 S 5 3 4 4 2 4 3 2 4 2 3 5 3 4 3 8 T 4 3 3 3 2 2 2 3 3 3 3 4 3 3 3 5 9 V 4 3 1 2 3 1 1 7 2 5 5 1 2 2 1 2 4 8 W 1 2 0 1 5 2 2 1 1 2 3 0 0 2 1 1 2 1 15 Y 2 2 1 2 7 1 6 3 2 3 3 2 1 3 2 2 2 3 6 11

BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix

  
Motif   1-1,    Power   16.3  Homology percent  81.9  Length     94
                      +DM RPRK*RRSRTTFTT*QLHQLERAFEKTQYPDVFTRE*LAMRLDLSEARVQVWFQNR
>Q9GRX3      ( 145)   SDMERPRKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNR
>Q9GRX3_AG   (  36)   NDMGRPRKIRRSRTTFTTYQLHQLERAFEKTQYPDVFTREELAMRLDLSEARVQVWFQNR

                      RAKWRKREK M++D ++*L  EQG*PEFPL+*PL
>Q9GRX3      ( 205)   RAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPL
>Q9GRX3_AG   (  96)   RAKWRKREKAMGRDTSAFLHHEQGMPEFPLALPL


  
Motif   1-2,    Power    7.7  Homology percent  76.2  Length     21
                      P+YK*PNFH+*LSQYMGL+NL
>Q9GRX3      ( 283)   PHYKLPNFHTLLSQYMGLSNL
>Q9GRX3_AG   ( 167)   PNYKIPNFHAILSQYMGLNNL