allpy

diff lib/project.py @ 153:0c7f6117481b
idea implemented: pdb and sec_str data moved from monomer to sequence
author: boris <bnagaev@gmail.com>
date: Tue, 26 Oct 2010 21:53:23 +0400
parents: 675b402094be
children: be4834043074
     1.1 --- a/lib/project.py	Tue Oct 26 13:32:19 2010 +0400
     1.2 +++ b/lib/project.py	Tue Oct 26 21:53:23 2010 +0400
     1.3 @@ -245,7 +245,7 @@
     1.4      def secstr(self, secuence, pdb_chain, gap='-'):
     1.5          """ Returns string representing secondary structure """
     1.6          return ''.join([
     1.7 -        (m.pdb_secstr[pdb_chain] if m and pdb_chain in m.pdb_secstr else gap) 
     1.8 +        (secuence.pdb_secstr[pdb_chain][m] if secuence.pdb_has(pdb_chain, m) else gap) 
     1.9          for m in self.alignment[secuence]])
    1.10      
    1.11      def save_secstr(self, out_file, secuence, pdb_chain,