1.1 --- a/lib/block.py	Sat Oct 23 13:16:12 2010 +0400
     1.2 +++ b/lib/block.py	Sat Oct 23 13:17:33 2010 +0400
     1.3 @@ -48,8 +48,9 @@
     1.4          """
     1.5          for sequence in self.sequences:
     1.6              out_file.write(">%(name)s %(description)s \n" % sequence.__dict__)
     1.7 -            monomers = [self.project.alignment[i] for i in sorted(self.positions)]
     1.8 -            string = ''.join([m.type.code1 if m else '-' for m in monomers])
     1.9 +            alignment_monomers = self.project.alignment[sequence]
    1.10 +            block_monomers = [alignment_monomers[i] for i in sorted(self.positions)]
    1.11 +            string = ''.join([m.type.code1 if m else '-' for m in block_monomers])
    1.12              if long_line:
    1.13                  for i in range(0, len(string) // long_line + 1):
    1.14                      out_file.write("%s \n" % string[i*long_line : i*long_line + long_line])