allpy

diff lib/project.py @ 154:be4834043074
fix project.secstr
author: boris <bnagaev@gmail.com>
date: Tue, 26 Oct 2010 22:23:09 +0400
parents: 0c7f6117481b
children: 3de50226f993
     1.1 --- a/lib/project.py	Tue Oct 26 21:53:23 2010 +0400
     1.2 +++ b/lib/project.py	Tue Oct 26 22:23:09 2010 +0400
     1.3 @@ -245,7 +245,7 @@
     1.4      def secstr(self, secuence, pdb_chain, gap='-'):
     1.5          """ Returns string representing secondary structure """
     1.6          return ''.join([
     1.7 -        (secuence.pdb_secstr[pdb_chain][m] if secuence.pdb_has(pdb_chain, m) else gap) 
     1.8 +        (secuence.pdb_secstr[pdb_chain][m] if secuence.secstr_has(pdb_chain, m) else gap) 
     1.9          for m in self.alignment[secuence]])
    1.10      
    1.11      def save_secstr(self, out_file, secuence, pdb_chain,