1.1 --- a/lib/project.py	Wed Oct 20 23:33:29 2010 +0400
     1.2 +++ b/lib/project.py	Wed Oct 20 23:38:21 2010 +0400
     1.3 @@ -158,7 +158,7 @@
     1.4          """
     1.5          for sequence in self.sequences:
     1.6              out_file.write(">%(name)s %(description)s \n" % sequence.__dict__)
     1.7 -            string = str(sequence)
     1.8 +            string = ''.join([m.monomer_type.code1 if m else '-' for m in self.alignment[sequence]])
     1.9              if long_line:
    1.10                  for i in range(0, len(string) // long_line + 1):
    1.11                      out_file.write("%s \n" % string[i*long_line : i*long_line + long_line])