allpy: b556c96c6719 test/test

allpy

blocks3d/www Makefile: never check certificates of github, they are too confusing for wget

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Mon, 26 May 2014 17:20:29 +0400
parents	afed1fd8920c
children

line source

1 from allpy import protein, base

3 def test_new_monomers():

4 """Test creation of monomer objects"""

5 s = base.Sequence()

7 try:

8 m = s.append_monomer(code1='A')

9 except Exception:

10 pass

11 else:

12 assert False, "base.Seqeuence must not be constructible from code1"

14 m = protein.Sequence().append_monomer(code3='ALA')

15 assert m.__class__.__name__ == "Alanine"

16 assert m.code1 == "A"

17 assert m.code3 == "ALA"

18 assert m.name == "Alanine"

20 m = s.append_monomer(code3='ALA')

21 assert m.__class__.__name__ == "Alanine"

22 assert m.code1 == "A"

23 assert m.code3 == "ALA"

24 assert m.name == "Alanine"

26 m = s.append_monomer(name="alaNINE")

27 assert m.__class__.__name__ == "Alanine"

28 assert m.code1 == "A"

29 assert m.code3 == "ALA"

30 assert m.name == "Alanine"

32 # This actually tests for proper overriding when there are many monomers

33 # with the same code3. The unmodified one takes precedence.

34 m = s.append_monomer(code3='SEC')

35 assert m.name == "Selenocysteine"

37 # vim: set et ts=4 sts=4 sw=4: