allpy
changeset 483:bcc658a78e61
geometrical_core: fix and improve options help
correct wrong metavar=MIN_SIZE of ac_count parameter
add metavars like 'int' and 'float' to other options
| author | boris (netbook) <bnagaev@gmail.com> |
|---|---|
| date | Fri, 18 Feb 2011 18:59:44 +0300 |
| parents | de1d0a17e090 |
| children | c3dc06b7fdcf |
| files | geometrical_core/geometrical-core |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
line diff
1.1 --- a/geometrical_core/geometrical-core Fri Feb 18 18:58:30 2011 +0300 1.2 +++ b/geometrical_core/geometrical-core Fri Feb 18 18:59:44 2011 +0300 1.3 @@ -95,12 +95,12 @@ 1.4 p.add_argument('-g',help='Output msf file',metavar='FILE',type=w) 1.5 p.add_argument('-p',help='Output pdb file',metavar='FILE',type=w) 1.6 p.add_argument('-s',help='Output spt file',metavar='FILE',type=w) 1.7 -p.add_argument('-d',help='Distance spreading',metavar='DELTA',type=f_nng,default=c.delta) 1.8 -p.add_argument('-m',help='Min core size',metavar='MIN_SIZE',type=pos,default=c.minsize) 1.9 -p.add_argument('-t',help='Bron-Kerbosh algorithm timeout',type=timeout,default=c.timeout) 1.10 -p.add_argument('-n',help='Alternative core new aa part',type=part,default=c.ac_new_atoms) 1.11 -p.add_argument('-a',help='Cores count',metavar='NEW_ATOMS',type=pos,default=c.ac_count) 1.12 -p.add_argument('-x',help='Superposition core identifier',type=i_nng,default=0) 1.13 +p.add_argument('-d',help='Distance spreading',metavar='float',type=f_nng,default=c.delta) 1.14 +p.add_argument('-m',help='Min core size',metavar='int',type=pos,default=c.minsize) 1.15 +p.add_argument('-t',help='Bron-Kerbosh algorithm timeout',metavar='int',type=timeout,default=c.timeout) 1.16 +p.add_argument('-n',help='Alternative core new aa part',metavar='float',type=part,default=c.ac_new_atoms) 1.17 +p.add_argument('-a',help='Cores count',metavar='int',type=i_nng,default=c.ac_count) 1.18 +p.add_argument('-x',help='Superposition core identifier',metavar='int',type=i_nng,default=0) 1.19 1.20 tmp_file = None 1.21