Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/3lnq.std.txt Дата изменения: Thu Jan 20 00:48:10 2011 Дата индексирования: Fri Feb 11 21:37:16 2011 Кодировка:

REM -------------------------------------------------------------------- 3LNQ
REM 3LNQ
REM STRIDE: Knowledge-based secondary structure assignment 3LNQ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3LNQ
REM 3LNQ
REM Residue accessible surface area calculation 3LNQ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3LNQ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3LNQ
REM 3LNQ
REM ------------------------ General information ----------------------- 3LNQ
REM 3LNQ
HDR GENE REGULATION/DNA 02-FEB-10 3LNQ 3LNQ
CMP MOL_ID: 1; 3LNQ
CMP MOLECULE: HOMEOBOX PROTEIN ARISTALESS; 3LNQ
CMP CHAIN: A; 3LNQ
CMP FRAGMENT: HOMEOBOX, RESIDUES 87-144; 3LNQ
CMP ENGINEERED: YES; 3LNQ
CMP MOL_ID: 2; 3LNQ
CMP MOLECULE: 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3' 3LNQ
CMP CHAIN: B; 3LNQ
CMP ENGINEERED: YES; 3LNQ
CMP MOL_ID: 3; 3LNQ
CMP MOLECULE: 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3' 3LNQ
CMP CHAIN: C; 3LNQ
CMP ENGINEERED: YES 3LNQ
SRC MOL_ID: 1; 3LNQ
SRC ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; 3LNQ
SRC ORGANISM_COMMON: FRUIT FLY; 3LNQ
SRC ORGANISM_TAXID: 7227; 3LNQ
SRC GENE: AL, CG3935; 3LNQ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3LNQ
SRC EXPRESSION_SYSTEM_TAXID: 562; 3LNQ
SRC EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); 3LNQ
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3LNQ
SRC EXPRESSION_SYSTEM_PLASMID: PET26B; 3LNQ
SRC MOL_ID: 2; 3LNQ
SRC SYNTHETIC: YES; 3LNQ
SRC MOL_ID: 3; 3LNQ
SRC SYNTHETIC: YES 3LNQ
AUT Y.TAKAMURA,K.MIYAZONO,K.NAGATA,K.SAIGO,T.KOJIMA,M.TANOKURA 3LNQ
REM 3LNQ
REM -------------------- Secondary structure summary ------------------- 3LNQ
REM 3LNQ
CHN /data/npidb/pdb/pdb_new/all/pdb3lnq.pdb A 3LNQ
REM 3LNQ
REM . . . . . 3LNQ
SEQ 1 RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNR 50 3LNQ
STR HHHHHHHHHHHHHTTTT HHHHHHHHHHH HHHHHHHHHHH 3LNQ
REM 3LNQ
REM 3LNQ
SEQ 51 RAKWRKQE 58 3LNQ
STR HHHHHHH 3LNQ
REM 3LNQ
REM 3LNQ
REM 3LNQ
LOC AlphaHelix SER 94 A ARG 106 A 3LNQ
LOC AlphaHelix VAL 112 A ILE 122 A 3LNQ
LOC AlphaHelix GLU 126 A GLN 143 A 3LNQ
LOC TurnIV THR 107 A PRO 110 A 3LNQ
REM 3LNQ
REM --------------- Detailed secondary structure assignment------------- 3LNQ
REM 3LNQ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3LNQ
ASG ARG A 87 1 C Coil 360.00 115.44 302.1 3LNQ
ASG TYR A 88 2 C Coil -67.62 138.04 171.7 3LNQ
ASG ARG A 89 3 C Coil -131.15 129.77 214.1 3LNQ
ASG THR A 90 4 C Coil -71.66 130.83 28.9 3LNQ
ASG THR A 91 5 C Coil -98.27 102.13 126.2 3LNQ
ASG PHE A 92 6 C Coil -71.41 139.81 56.5 3LNQ
ASG THR A 93 7 C Coil -74.92 157.77 74.9 3LNQ
ASG SER A 94 8 H AlphaHelix -52.51 -41.45 93.1 3LNQ
ASG PHE A 95 9 H AlphaHelix -54.98 -56.15 89.4 3LNQ
ASG GLN A 96 10 H AlphaHelix -52.73 -47.20 26.5 3LNQ
ASG LEU A 97 11 H AlphaHelix -60.83 -46.44 65.5 3LNQ
ASG GLU A 98 12 H AlphaHelix -64.95 -38.76 105.4 3LNQ
ASG GLU A 99 13 H AlphaHelix -66.84 -38.90 9.2 3LNQ
ASG LEU A 100 14 H AlphaHelix -60.70 -45.01 0.0 3LNQ
ASG GLU A 101 15 H AlphaHelix -65.31 -40.35 68.3 3LNQ
ASG LYS A 102 16 H AlphaHelix -63.41 -39.00 97.2 3LNQ
ASG ALA A 103 17 H AlphaHelix -63.03 -30.04 3.7 3LNQ
ASG PHE A 104 18 H AlphaHelix -78.55 -33.29 7.6 3LNQ
ASG SER A 105 19 H AlphaHelix -69.03 -43.48 98.9 3LNQ
ASG ARG A 106 20 H AlphaHelix -51.50 -54.56 162.7 3LNQ
ASG THR A 107 21 T Turn -160.92 144.22 56.7 3LNQ
ASG HIS A 108 22 T Turn -75.81 -20.93 50.1 3LNQ
ASG TYR A 109 23 T Turn -130.58 74.05 146.6 3LNQ
ASG PRO A 110 24 T Turn -69.23 138.12 10.7 3LNQ
ASG ASP A 111 25 C Coil -60.18 173.21 94.1 3LNQ
ASG VAL A 112 26 H AlphaHelix -60.00 -40.24 93.0 3LNQ
ASG PHE A 113 27 H AlphaHelix -69.54 -45.27 113.1 3LNQ
ASG THR A 114 28 H AlphaHelix -57.85 -44.23 43.9 3LNQ
ASG ARG A 115 29 H AlphaHelix -67.03 -44.99 37.9 3LNQ
ASG GLU A 116 30 H AlphaHelix -70.04 -34.51 96.8 3LNQ
ASG GLU A 117 31 H AlphaHelix -63.74 -42.45 118.6 3LNQ
ASG LEU A 118 32 H AlphaHelix -64.88 -41.90 13.1 3LNQ
ASG ALA A 119 33 H AlphaHelix -57.33 -45.88 14.1 3LNQ
ASG MET A 120 34 H AlphaHelix -61.79 -38.01 170.9 3LNQ
ASG LYS A 121 35 H AlphaHelix -67.66 -49.08 122.2 3LNQ
ASG ILE A 122 36 H AlphaHelix -107.51 7.17 7.2 3LNQ
ASG GLY A 123 37 C Coil 67.24 30.44 61.5 3LNQ
ASG LEU A 124 38 C Coil -115.09 156.63 18.2 3LNQ
ASG THR A 125 39 C Coil -73.43 155.33 61.4 3LNQ
ASG GLU A 126 40 H AlphaHelix -57.49 -41.47 75.5 3LNQ
ASG ALA A 127 41 H AlphaHelix -55.28 -45.93 59.6 3LNQ
ASG ARG A 128 42 H AlphaHelix -69.37 -32.60 106.6 3LNQ
ASG ILE A 129 43 H AlphaHelix -66.05 -48.18 0.2 3LNQ
ASG GLN A 130 44 H AlphaHelix -52.10 -47.05 82.4 3LNQ
ASG VAL A 131 45 H AlphaHelix -65.40 -47.60 70.8 3LNQ
ASG TRP A 132 46 H AlphaHelix -53.56 -38.64 29.0 3LNQ
ASG PHE A 133 47 H AlphaHelix -72.51 -38.50 3.0 3LNQ
ASG GLN A 134 48 H AlphaHelix -58.71 -45.34 99.4 3LNQ
ASG ASN A 135 49 H AlphaHelix -74.86 -29.42 107.3 3LNQ
ASG ARG A 136 50 H AlphaHelix -71.18 -40.64 44.0 3LNQ
ASG ARG A 137 51 H AlphaHelix -66.13 -40.37 39.1 3LNQ
ASG ALA A 138 52 H AlphaHelix -65.02 -38.40 38.6 3LNQ
ASG LYS A 139 53 H AlphaHelix -64.08 -50.37 133.5 3LNQ
ASG TRP A 140 54 H AlphaHelix -56.48 -48.19 91.2 3LNQ
ASG ARG A 141 55 H AlphaHelix -52.13 -49.84 128.2 3LNQ
ASG LYS A 142 56 H AlphaHelix -62.05 -31.69 172.0 3LNQ
ASG GLN A 143 57 H AlphaHelix -80.67 21.10 113.9 3LNQ
ASG GLU A 144 58 C Coil -128.84 360.00 159.6 3LNQ