Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/2pxd.std.txt Дата изменения: Thu Jan 20 16:07:33 2011 Дата индексирования: Fri Feb 11 21:22:22 2011 Кодировка:

REM -------------------------------------------------------------------- 2PXD
REM 2PXD
REM STRIDE: Knowledge-based secondary structure assignment 2PXD
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2PXD
REM 2PXD
REM Residue accessible surface area calculation 2PXD
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2PXD
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2PXD
REM 2PXD
REM ------------------------ General information ----------------------- 2PXD
REM 2PXD
HDR SIGNALING PROTEIN/RNA 14-MAY-07 2PXD 2PXD
CMP MOL_ID: 1; 2PXD
CMP MOLECULE: SIGNAL RECOGNITION PARTICLE PROTEIN; 2PXD
CMP CHAIN: A; 2PXD
CMP FRAGMENT: C TERMINAL DOMAIN (RESIDUES 328-432); 2PXD
CMP SYNONYM: FIFTY-FOUR HOMOLOG, P48; 2PXD
CMP ENGINEERED: YES; 2PXD
CMP MOL_ID: 2; 2PXD
CMP MOLECULE: 4.5 S RNA; 2PXD
CMP CHAIN: B; 2PXD
CMP FRAGMENT: DOMAIN IV; 2PXD
CMP ENGINEERED: YES; 2PXD
CMP MUTATION: YES 2PXD
SRC MOL_ID: 1; 2PXD
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 2PXD
SRC ORGANISM_TAXID: 562; 2PXD
SRC GENE: FFH; 2PXD
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2PXD
SRC EXPRESSION_SYSTEM_TAXID: 562; 2PXD
SRC EXPRESSION_SYSTEM_STRAIN: BL21(PLYSS); 2PXD
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2PXD
SRC MOL_ID: 2; 2PXD
SRC SYNTHETIC: YES; 2PXD
SRC OTHER_DETAILS: SYNTHETIC 2PXD
AUT A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT 2PXD
REM 2PXD
REM -------------------- Secondary structure summary ------------------- 2PXD
REM 2PXD
CHN /data/npidb/pdb/pdb_new/all/pdb2pxd.pdb A 2PXD
REM 2PXD
REM . . . . . 2PXD
SEQ 1 FDLNDFLEQKVLVREAIINSTKERAKPEIIKGSRKRRIAAGSGQVQDVNR 50 2PXD
STR HHHHHHHTTTTTTTTTTT GGGG GGG HHHHHHHHHH HHHHHH 2PXD
REM 2PXD
REM . 2PXD
SEQ 51 LLKQFDDQRKK 61 2PXD
STR HHHHHHH 2PXD
REM 2PXD
REM 2PXD
REM 2PXD
LOC AlphaHelix LEU 3 A GLN 9 A 2PXD
LOC AlphaHelix GLY 48 A GLY 57 A 2PXD
LOC AlphaHelix VAL 62 A ASP 74 A 2PXD
LOC 310Helix LYS 38 A ALA 41 A 2PXD
LOC 310Helix PRO 43 A ILE 45 A 2PXD
LOC TurnIV LYS 23 A VAL 26 A 2PXD
LOC TurnI VAL 24 A ARG 27 A 2PXD
LOC TurnIV LEU 25 A GLU 29 A 2PXD
LOC TurnIV VAL 26 A ALA 30 A 2PXD
LOC TurnIV ARG 27 A ILE 31 A 2PXD
LOC TurnI GLU 29 A ILE 32 A 2PXD
LOC TurnI ALA 30 A ASN 33 A 2PXD
LOC TurnI ILE 31 A SER 34 A 2PXD
REM 2PXD
REM --------------- Detailed secondary structure assignment------------- 2PXD
REM 2PXD
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2PXD
ASG PHE A 1 1 C Coil 360.00 84.45 119.3 2PXD
ASG ASP A 2 2 C Coil -88.76 177.33 40.6 2PXD
ASG LEU A 3 3 H AlphaHelix -61.19 -23.79 10.0 2PXD
ASG ASN A 4 4 H AlphaHelix -57.55 -47.51 65.2 2PXD
ASG ASP A 5 5 H AlphaHelix -64.32 -61.48 63.0 2PXD
ASG PHE A 6 6 H AlphaHelix -43.42 -25.47 39.6 2PXD
ASG LEU A 7 7 H AlphaHelix -73.45 -51.06 36.1 2PXD
ASG GLU A 8 8 H AlphaHelix -46.51 -51.02 170.2 2PXD
ASG GLN A 9 9 H AlphaHelix -58.91 360.00 168.4 2PXD
ASG LYS A 23 10 T Turn 360.00 -39.39 127.5 2PXD
ASG VAL A 24 11 T Turn -87.84 -10.29 92.9 2PXD
ASG LEU A 25 12 T Turn -84.99 -45.04 64.1 2PXD
ASG VAL A 26 13 T Turn -59.01 -9.38 65.8 2PXD
ASG ARG A 27 14 T Turn -97.59 360.00 64.7 2PXD
ASG GLU A 29 15 T Turn 360.00 -49.01 104.8 2PXD
ASG ALA A 30 16 T Turn -50.02 -39.04 35.0 2PXD
ASG ILE A 31 17 T Turn -65.72 -36.72 23.9 2PXD
ASG ILE A 32 18 T Turn -79.38 -33.65 12.7 2PXD
ASG ASN A 33 19 T Turn -64.34 0.08 97.4 2PXD
ASG SER A 34 20 T Turn -110.41 360.00 35.0 2PXD
ASG THR A 36 21 C Coil 360.00 360.00 84.5 2PXD
ASG LYS A 38 22 G 310Helix 360.00 -55.65 177.5 2PXD
ASG GLU A 39 23 G 310Helix -49.14 -58.88 4.6 2PXD
ASG ARG A 40 24 G 310Helix -57.60 -17.04 65.7 2PXD
ASG ALA A 41 25 G 310Helix -94.89 -41.59 61.8 2PXD
ASG LYS A 42 26 C Coil -133.64 75.39 108.7 2PXD
ASG PRO A 43 27 G 310Helix -49.02 -35.05 16.2 2PXD
ASG GLU A 44 28 G 310Helix -48.95 -38.11 108.5 2PXD
ASG ILE A 45 29 G 310Helix -58.37 -21.29 41.4 2PXD
ASG ILE A 46 30 C Coil -69.95 107.74 13.7 2PXD
ASG LYS A 47 31 C Coil -121.76 -157.21 134.4 2PXD
ASG GLY A 48 32 H AlphaHelix -43.71 -91.06 47.0 2PXD
ASG SER A 49 33 H AlphaHelix -31.46 -49.14 90.7 2PXD
ASG ARG A 50 34 H AlphaHelix -62.22 -47.71 97.8 2PXD
ASG LYS A 51 35 H AlphaHelix -50.34 -46.92 46.5 2PXD
ASG ARG A 52 36 H AlphaHelix -55.77 -36.23 167.0 2PXD
ASG ARG A 53 37 H AlphaHelix -67.65 -49.82 98.3 2PXD
ASG ILE A 54 38 H AlphaHelix -58.12 -57.80 12.6 2PXD
ASG ALA A 55 39 H AlphaHelix -49.82 -65.08 3.4 2PXD
ASG ALA A 56 40 H AlphaHelix -53.78 -26.69 85.5 2PXD
ASG GLY A 57 41 H AlphaHelix -76.36 -16.30 47.5 2PXD
ASG SER A 58 42 C Coil -128.87 41.94 30.3 2PXD
ASG GLY A 59 43 C Coil 42.53 360.00 79.3 2PXD
ASG GLN A 61 44 C Coil 360.00 164.66 118.5 2PXD
ASG VAL A 62 45 H AlphaHelix -64.18 -32.82 54.5 2PXD
ASG GLN A 63 46 H AlphaHelix -59.20 -44.14 142.9 2PXD
ASG ASP A 64 47 H AlphaHelix -55.56 -48.40 78.3 2PXD
ASG VAL A 65 48 H AlphaHelix -61.66 -51.31 2.6 2PXD
ASG ASN A 66 49 H AlphaHelix -52.68 -36.99 74.5 2PXD
ASG ARG A 67 50 H AlphaHelix -64.22 -54.49 42.9 2PXD
ASG LEU A 68 51 H AlphaHelix -52.94 -50.90 24.7 2PXD
ASG LEU A 69 52 H AlphaHelix -59.62 -32.71 33.8 2PXD
ASG LYS A 70 53 H AlphaHelix -66.79 -44.85 110.6 2PXD
ASG GLN A 71 54 H AlphaHelix -60.90 -49.70 111.7 2PXD
ASG PHE A 72 55 H AlphaHelix -56.35 -47.34 28.4 2PXD
ASG ASP A 73 56 H AlphaHelix -52.61 -55.15 59.7 2PXD
ASG ASP A 74 57 H AlphaHelix -53.91 360.00 100.5 2PXD
ASG GLN A 76 58 C Coil 360.00 -60.50 43.8 2PXD
ASG ARG A 77 59 C Coil -42.72 360.00 170.6 2PXD
ASG LYS A 80 60 C Coil 360.00 8.10 118.8 2PXD
ASG LYS A 81 61 C Coil -132.07 360.00 236.3 2PXD