Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/2vjv.pdb1.pdb.txt Дата изменения: Fri Mar 22 14:14:03 2013 Дата индексирования: Fri Feb 28 17:30:09 2014 Кодировка:

/pdb/2vjv.pdb1.pdb
2vjv.pdb1.out
2 # duplex
26 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
251 306 0 # 1 | ...1>C:..16_:[.DA]A-----T[.DT]:..-3_:E<...1 0.14 0.02 11.98 8.68 -4.22
252 305 0 # 2 | ...1>C:..17_:[.DA]A-----T[.DT]:..-4_:E<...1 0.25 0.19 16.34 8.81 -3.55
255 276 0 # 3 | ...1>C:..20_:[.DC]C-----G[.DG]:..41_:C<...1 0.16 0.12 16.25 9.00 -3.79
256 275 0 # 4 | ...1>C:..21_:[.DC]C-----G[.DG]:..40_:C<...1 0.42 0.29 20.96 8.85 -2.96
257 274 0 # 5 | ...1>C:..22_:[.DC]C-----G[.DG]:..39_:C<...1 0.30 0.11 20.61 8.95 -3.45
258 273 0 # 6 | ...1>C:..23_:[.DC]C-----G[.DG]:..38_:C<...1 0.31 0.03 14.46 8.86 -3.91
259 271 0 # 7 | ...1>C:..24_:[.DT]T-----A[.DA]:..36_:C<...1 0.19 0.06 4.13 8.79 -4.50
260 270 0 # 8 | ...1>C:..25_:[.DA]A-----T[.DT]:..35_:C<...1 0.89 0.11 14.14 8.56 -3.18
261 269 0 # 9 | ...1>C:..26_:[.DG]G-----C[.DC]:..34_:C<...1 0.18 0.09 12.30 9.03 -4.03
262 268 0 # 10 | ...1>C:..27_:[.DC]C-----G[.DG]:..33_:C<...1 0.29 0.21 4.18 8.87 -4.08
263 267 9 # 11 x ...1>C:..28_:[.DT]T-**+-A[.DA]:..32_:C<...1 3.62 0.30 16.92 6.64 2.07
254 308 1 # 12 + ...1>C:..19_:[.DG]G-----C[.DC]:..-1_:E<...1 0.32 0.14 11.49 8.97 -3.83
277 312 0 # 13 | ...1>D:..16_:[.DA]A-----T[.DT]:..-3_:F<...1 0.12 0.01 11.54 8.60 -4.28
278 311 0 # 14 | ...1>D:..17_:[.DA]A-----T[.DT]:..-4_:F<...1 0.27 0.22 17.10 8.83 -3.44
281 302 0 # 15 | ...1>D:..20_:[.DC]C-----G[.DG]:..41_:D<...1 0.21 0.18 17.05 8.89 -3.59
282 301 0 # 16 | ...1>D:..21_:[.DC]C-----G[.DG]:..40_:D<...1 0.46 0.41 23.48 8.83 -2.55
283 300 0 # 17 | ...1>D:..22_:[.DC]C-----G[.DG]:..39_:D<...1 0.46 0.33 23.76 8.83 -2.69
284 299 0 # 18 | ...1>D:..23_:[.DC]C-----G[.DG]:..38_:D<...1 0.34 0.06 16.43 8.90 -3.72
285 297 0 # 19 | ...1>D:..24_:[.DT]T-----A[.DA]:..36_:D<...1 0.21 0.17 4.06 8.81 -4.25
286 296 0 # 20 | ...1>D:..25_:[.DA]A-----T[.DT]:..35_:D<...1 0.27 0.12 10.95 8.58 -3.93
287 295 0 # 21 | ...1>D:..26_:[.DG]G-----C[.DC]:..34_:D<...1 0.36 0.23 15.34 8.87 -3.42
288 294 0 # 22 | ...1>D:..27_:[.DC]C-----G[.DG]:..33_:D<...1 0.19 0.05 4.52 8.88 -4.47
289 293 9 # 23 x ...1>D:..28_:[.DT]T-**+-A[.DA]:..32_:D<...1 3.57 0.41 11.75 6.74 1.97
280 314 1 # 24 + ...1>D:..19_:[.DG]G-----C[.DC]:..-1_:F<...1 0.33 0.14 9.67 8.90 -3.90
303 304 1 # 25 + ...1>E:..-6_:[.DT]T-**+-A[.DA]:..-5_:E<...1 5.84 0.35 59.30 6.39 9.50
309 310 1 # 26 + ...1>F:..-6_:[.DT]T-**+-A[.DA]:..-5_:F<...1 5.73 0.70 48.04 6.20 9.52
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 4 non-Watson-Crick base-pairs, and 6 helices (4 isolated bps)
##### Helix #1 (11): 1 - 11 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (1): 12
##### Helix #3 (11): 13 - 23 ***broken O3'[i] to P[i+1] linkage***
##### Helix #4 (1): 24
##### Helix #5 (1): 25
##### Helix #6 (1): 26