Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1dz5.MDL1.pdb.hmm.txt Дата изменения: Fri Oct 9 21:39:02 2015 Дата индексирования: Mon Apr 11 08:04:45 2016 Кодировка:

# pfam_scan.pl, run at Fri Oct 9 21:39:00 2015
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1dz5.MDL1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1dz5_A 29 86 29 86 PF13893.1 RRM_5 Domain 1 56 56 46.5 2.3e-12 1 CL0221
#HMM LyklfskfGkverikifrkk..ggqAfvefdtveaArkakeylngvklggktLkveys
#MATCH L+++fs+fG++ +i++ r+ +gqAfv f+ v++A +a+++++g ++++k+++++y+
#PP 89***************955999**********************************8
#SEQ LHAIFSRFGQILDILVSRSLkmRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA
1dz5_B 29 86 29 86 PF13893.1 RRM_5 Domain 1 56 56 46.5 2.3e-12 1 CL0221
#HMM LyklfskfGkverikifrkk..ggqAfvefdtveaArkakeylngvklggktLkveys
#MATCH L+++fs+fG++ +i++ r+ +gqAfv f+ v++A +a+++++g ++++k+++++y+
#PP 89***************955999**********************************8
#SEQ LHAIFSRFGQILDILVSRSLkmRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA