Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~xedin/Term4/Practice1-3/comp Дата изменения: Sat Mar 29 20:20:52 2008 Дата индексирования: Tue Oct 2 17:04:30 2012 Кодировка:

########################################
# Program: needle
# Rundate: Sat 29 Mar 2008 21:25:40
# Commandline: needle
# [-asequence] precursor
# [-bsequence] rir1_gene.fasta
# -outfile comp
# -gapopen 100
# Align_format: srspair
# Report_file: comp
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: precursor
# 2: 2342887-2345172
# Matrix: EDNAFULL
# Gap_penalty: 100.0
# Extend_penalty: 0.5
#
# Length: 2286
# Identity: 1234/2286 (54.0%)
# Similarity: 1801/2286 (78.8%)
# Gaps: 0/2286 ( 0.0%)
# Score: 4797.0
#
#
#=======================================

precursor 1 akgaatcakawtctyctwktgtcaamgctcgrcggtagscyygascrcww 50
|.||||||.|.||| || .||.|||.||.||.||||||... ||.|.|..
2342887-23451 1 ATGAATCAGAATCTGCTGGTGACAAAGCGCGACGGTAGCACAGAGCGCAT 50

precursor 51 mamrmaymacwaaawsccrkacattctgractskccgswagaagygmtgc 100
.|. ... ||.|||..|. .|.|||||.|.|...||. ||||| ..|||
2342887-23451 51 CAATCTCGACAAAATCCATCGCGTTCTGGATTGGGCGGCAGAAGGACTGC 100

precursor 101 rwgrcgattcgmtkytcsaggtcgcyytgsgcwwycgratymagttgtar 150
....||.||||.|...|.||||||. .||.||. .|. ||..||||.||
2342887-23451 101 ATAACGTTTCGATTTCCCAGGTCGAGCTGCGCTCCCACATTCAGTTTTAT 150

precursor 151 gamsatstcwagrcctmtgygrwscaamaaaccattatyaaygttgtcgc 200
||...| ||.||.|||.|| ....||. ||||||||||.|| |.||.|||
2342887-23451 151 GACGGTATCAAGACCTCTGACATCCACGAAACCATTATCAAGGCTGCCGC 200

precursor 201 msacctgatyctscgwsacgcgysggwtwatwagyaytkcgsygcgwgcc 250
..|||||||....||..|.|||..||.|.|| ||.|...||..||| |||
2342887-23451 201 AGACCTGATCTCCCGTGATGCGCCGGATTATCAGTATCTCGCCGCGCGCC 250

precursor 251 kgccktwyttccacgtgcggyaaagwkcctaacgccggyatgagccsccc 300
.|.|....||||||.||||. |||...||||..|||.|..||||||.||.
2342887-23451 251 TGGCGATCTTCCACCTGCGTAAAAAAGCCTACGGCCAGTTTGAGCCGCCT 300

precursor 301 ccstwcyatcaccakrcggwsaraawkgtccrkatcacsaawtctkagaa 350
.|.....|..|||| ..||..|.||..|||...||....||.|...|.||
2342887-23451 301 GCGCTGTACGACCACGTGGTGAAAATGGTCGAGATGGGCAAATACGATAA 350

precursor 351 tcrkctgmtrcwagsytwyarggaagamgasttcamyccgctggactcct 400
||..|||.|...|| .|..| ||||||.||.||||. |.|.|||||.|||
2342887-23451 351 TCATCTGCTGGAAGACTACACGGAAGAAGAGTTCAAGCAGATGGACACCT 400

precursor 401 ttctcgctcacsascrtsrkwcgaccgtcrwgtscsstccyytcmagcgg 450
||.|||.||||.|.|.|.....||||.|| .| ...|.|. |..|||.|
2342887-23451 401 TTATCGATCACGACCGTGATATGACCTTCTCTTATGCTGCCGTTAAGCAG 450

precursor 451 wtggwgggcmaatcgryrstwcagackcgswtgaryggmmmaskctwygg 500
|||..|||.|||.. ...|.||||. ||. ||| .||. .| .||..|.
2342887-23451 451 CTGGAAGGCAAATATCTGGTACAGAACCGCGTGACCGGCGAAATCTATGA 500

precursor 501 tasctsyccgrtcmtwyatartttagtagcygkgsgctygrtcgsyarmt 550
.|.|...|.| ||.|..||| |.||||.||.| | |||.| ||.. |..|
2342887-23451 501 GAGCGCCCAGTTCCTTTATATTCTAGTTGCCGCGTGCTTGTTCTCGAACT 550

precursor 551 accgscgagwakcgcgccwwcaryaycrggggcktttttrcgaygcgctt 600
|||..||.|.| ||||||. ||..|.. |..||.|||||.|||.|||.||
2342887-23451 551 ACCCGCGTGAAACGCGCCTGCAATATGTGAAGCGTTTTTACGACGCGGTT 600

precursor 601 yccacrkttmawaatscsctggtaacascwatsakgcktgrmktgcgyac 650
.||||..||.|.|.| |.|||...||..|.||.|.|. .|...||||.||
2342887-23451 601 TCCACATTTAAAATTTCGCTGCCGACGCCAATCATGTCCGGCGTGCGTAC 650

precursor 651 ccctagtagsyaycyracccymtrcctamtgatgaaytgcsgtymmmscc 700
|||.|.|.| .| .. |.|...|.|.||.||||..| |||.|| ....||
2342887-23451 651 CCCGACTCGTCAGTTCAGCTCCTGCGTACTGATCGAGTGCGGTGACAGCC 700

precursor 701 kggastcyatramakctwccgtmagcamgattgttraakycctttccmar 750
.||| ||.|| |...|..||...|||..|||||||.||. |.|||||.|.
2342887-23451 701 TGGATTCCATCAACGCCACCTCCAGCGCGATTGTTAAATACGTTTCCCAG 750

precursor 751 crwgtcgygmtcggccymmacgmcykrcktattcstrsyttcggtagwgm 800
|..|.|| |.|||||....|||.| ..|.|||||.|.. .|.||||| ..
2342887-23451 751 CGTGCCGGGATCGGCATCAACGCCGGGCGTATTCGTGCGCTGGGTAGCCC 800

precursor 801 gtktcgtsggggtgaagcgttcsacamssgytgcattcytttmtmcamac 850
|..|||..|.||||||||||||.|.|...|.|||||||..||.|.||.||
2342887-23451 801 GATTCGCGGTGGTGAAGCGTTCCATACCGGCTGCATTCCGTTCTACAAAC 850

precursor 851 atttcyagaawgtsgygmagtcyttctatargsgwggtgtrmksagkgst 900
|||||.|||..|..|.|.|.||.|.||.|..|.| |||||.....| |.|
2342887-23451 851 ATTTCCAGACAGCGGTGAAATCCTGCTCTCAGGGCGGTGTGCGCGGCGGT 900

precursor 901 scaccymcmckgytctscsagatrtgkcagyccgtmgyrgraaycstgct 950
.|..| .| |.|.||| |..|||.||.||....|..|..|.|| |.||||
2342887-23451 901 GCGGCAACGCTGTTCTACCCGATGTGGCATCTGGAAGTGGAAAGCCTGCT 950

precursor 951 ggwgkkgatrwacmwwkggggtgtgggcgycaamcgckatmgtyctgtrt 1000
||.|..||...||.. |.|||||||..| |||.|||....||..|.|..
2342887-23451 951 GGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGG 1000

precursor 1001 rstmmkakttrmaawtaaamakrctgacatacaaccgkcagctsraagyt 1050
..|......|..||.|.||.| .||||..||.|.|||.|.|||..||| |
2342887-23451 1001 ACTACGGGGTACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGT 1050

precursor 1051 swaggymytrccgtsgtcwgcccktgcggtstaycgggrytgwactawac 1100
..||......||.|..||.||||.|.||...||.||||..||.||.| .|
2342887-23451 1051 GAAGATATCACCCTGTTCAGCCCGTCCGACGTACCGGGGCTGTACGACGC 1100

precursor 1101 gttcttymcyaatmaggmaggrwaywgacktmtkwwtysgmaktmtcagt 1150
||||||. |..||.|||.||..... .||.|.|...| ...| |.|.||.
2342887-23451 1101 GTTCTTCGCCGATCAGGAAGAGTTTGAACGTCTGTATACCAAATATGAGA 1150

precursor 1151 agrkygacrgcaygcgmartcmgmgtmrasaaryygtstagckggtmtgg 1200
|.. .|||.|||..||.|..|.|.|| . ||...|| .|||.|.|.|.|
2342887-23451 1151 AAGACGACAGCATCCGCAAGCAGCGTGTGAAAGCCGTTGAGCTGTTCTCG 1200

precursor 1201 ctactgatacmrgamcstgmygktascggtcatmtcyacwtkmrmaacsk 1250
||..||||.|..||.|.||. . ||.|||||.|.||.|..|... |||..
2342887-23451 1201 CTGATGATGCAGGAACGTGCGTCTACCGGTCGTATCTATATTCAGAACGT 1250

precursor 1251 tgacgmctttaatgkccagagycswkatgawccrgccaycgsgccmacgs 1300
||||..||..|||. |||.||.|. ..|||.||.||||.||.|||...|.
2342887-23451 1251 TGACCACTGCAATACCCATAGCCCGTTTGATCCGGCCATCGCGCCAGTGC 1300

precursor 1301 gacatwckaaccagtgcccggakwwaascctywcgrcgacrmcgctgaat 1350
|.||..|.||||.|||||.|||...|..||| ||.|.|...|||||||.
2342887-23451 1301 GTCAGTCTAACCTGTGCCTGGAGATAGCCCTGCCGACCAAACCGCTGAAC 1350

precursor 1351 kgcgttatcracraggmrrkgsaagmcmcsskgcsyasyckstrkgcyta 1400
..|||.|.|.||.||.. ....||. | |...|...|. |..| .||.|.
2342887-23451 1351 GACGTCAACGACGAGAACGGTGAAATCGCGCTGTGTACGCTGTCTGCTTT 1400

precursor 1401 yraycygggagcaagtwwtaacccgaawgmmagggsrsagctgccaatss 1450
..|.|.|||.||||.|..|||||.|.|.|....|| ..|||||.|||| .
2342887-23451 1401 CAACCTGGGCGCAATTAATAACCTGGATGAACTGGAAGAGCTGGCAATTC 1450

precursor 1451 tgsytktycggmcacwtgmckcrckgytksattaycaggtttatcsyaty 1500
||....|.||. |||.||.|.|.|.|.|..||||.||||.|||.|. ||.
2342887-23451 1451 TGGCGGTTCGTGCACTTGACGCGCTGCTGGATTATCAGGATTACCCGATC 1500

precursor 1501 cmasscrsggcrcsmkccsgsakggrtcsyagtacgctggrtatwkgtkc 1550
|....|......|. ......|.||.||...|||||||||.|||..||..
2342887-23451 1501 CCGGCCGCCAAACGTGGAGCGATGGGTCGTCGTACGCTGGGTATTGGTGT 1550

precursor 1551 gwtgaacctcggtgtgtasctrkagamgawcagtawcckyaastcygycc 1600
|.|.|||.|||.|...||.||...||.|..|.|||..|...|.||.| |.
2342887-23451 1551 GATCAACTTCGCTTACTACCTGGCGAAGCACGGTAAACGCTACTCCGACG 1600

precursor 1601 kcagmtccwatatcykmacgcggwgrwccttcgargctattcrrtwtrcy 1650
.|||..||.|.|.|.. ||||......|||||||.||.||||..|.| ..
2342887-23451 1601 GCAGCGCCAACAACCTGACGCATAAAACCTTCGAAGCCATTCAGTATTAC 1650

precursor 1651 ctgmggwwagccygtaawraggtggagmmagwrswrgkyscrtgcccgms 1700
|||..|..||||..|||..||.|||.|..||.....|...|.|||||| .
2342887-23451 1651 CTGCTGAAAGCCTCTAATGAGCTGGCGAAAGAGCAAGGCGCGTGCCCGTG 1700

precursor 1701 gyttaaggaactsacttyctcasgrskgwtcstgccgatcccwtrgtyka 1750
|.||||.|||...|||| |.|. ....|.||.||||||||.... .| .|
2342887-23451 1701 GTTTAACGAAACCACTTACGCGAAAGGGATCCTGCCGATCGATACCTATA 1750

precursor 1751 agtrgsawgtgwagaccgtkssgaacamaccscttcartaskwctggwaa 1800
||....|..|| |.|||.| ...||....||.||.|| ||...|||| ||
2342887-23451 1751 AGAAAGATCTGGATACCATCGCTAATGAGCCGCTGCATTACGACTGGGAA 1800

precursor 1801 gcscwgsccsasccartcmamacgmacgkmckrygsayctmawcrcgttc 1850
|| |.|....|..||.||.|.|||.|||. |...| | ||...|.|.|||
2342887-23451 1801 GCTCTGCGTGAGTCAATCAAAACGCACGGTCTGCGTAACTCCACGCTTTC 1850

precursor 1851 wrgtrtmaatmwctcggaryktatstmgsagwyttctamcgcragtwatg 1900
...| | |... .||.||. |.. |.|.||...||||.||| |.|.|.|
2342887-23451 1851 TGCTCTGATGCCGTCCGAGACTTCTTCGCAGATCTCTAACGCCACTAACG 1900

precursor 1901 gtascgaaccacagygsggtttscrsmgcsksaargckmcgagmmtcggk 1950
||| .|||||.|.|.|.||||... ..|| ..||.||. |||.. .|||.
2342887-23451 1901 GTATTGAACCGCCGCGCGGTTACGTCAGCATCAAAGCGTCGAAAGACGGT 1950

precursor 1951 aytttgcrccrggtcgwgccgsactacgarsaystgmamgacgtckatga 2000
|.|||||.||.|||.|.||||.|||||||..|..||.|.||||.|.||||
2342887-23451 1951 ATTTTGCGCCAGGTGGTGCCGGACTACGAGCACCTGCACGACGCCTATGA 2000

precursor 2001 accsakrktgkmcayacygsstaasgwtkrttmtytsgacccyggcmkta 2050
.|.......|...|..|.|..|||.|.|..||.|.|..|.|. |.. .||
2342887-23451 2001 GCTGCTGTGGGAAATGCCGGGTAACGATGGTTATCTGCAACTGGTGGGTA 2050

precursor 2051 tyktwcakaattwtawcgawmryytgctctgkagtaacacsaagttcgkt 2100
|. | ||.||.|.||.|||... ..|.|||.....|||||.||.|.|| |
2342887-23451 2051 TCATGCAGAAATTTATCGATCAGTCGATCTCTGCCAACACCAACTACGAT 2100

precursor 2101 wcgccacgrcyyccgtcgtgaayaatgcramkgcmkcagtygcyrtcagt 2150
||.|||| ...|||||..||| |.||| ...||..||||.||....||.
2342887-23451 2101 CCGTCACGCTTCCCGTCAGGAAAAGTGCCGATGCAGCAGTTGCTGAAAGA 2150

precursor 2151 cmractcmcgyccyacttwtytkraggyrtgaccatgkastatsggkaca 2200
|. .|||.|. ||.||...|.....|.....||..||.| |||..| |||
2342887-23451 2151 CCTGCTCACCGCCTACAAATTCGGGGTCAAAACACTGTATTATCAGAACA 2200

precursor 2201 ctcgwgacagcssttaargcrckswagataakmtsggagcarrwaccsak 2250
|.||.|||.||..|.||..|.| ..|||..|..|.|...|. .|.|.|.
2342887-23451 2201 CCCGTGACGGCGCTGAAGACGCACAAGACGATCTGGTGCCGTCAATCCAG 2250

precursor 2251 gwctytggytgckaaagarkyctwwgrgawktctwr 2286
|.|. |||.|||.||||........| .| ||| .
2342887-23451 2251 GACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGA 2286


#---------------------------------------
#---------------------------------------