Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~Redwitch/t3_files/1exd.txt Дата изменения: Mon Oct 3 19:30:18 2005 Дата индексирования: Tue Oct 2 09:33:14 2012 Кодировка:

# This is a Rasmol script to demonstrate tRNA structure named 1exd.
# In order to automatically load PDB file you may insert the following line
# load pdb1exd.pdb
# Be careful with directories and paths!

define helix1 902-907B, 966-971B
define helix2 949-953B, 961-965B
define helix3 937-944B, 926-933B
define helix4 910-912B, 923-925B
define hel helix1, helix2, helix3, helix4
echo tRNA helices are defined as helix1, helix2, helix3, helix4. All helices are defined as hel.
define loop1 913-922B
define loop2 954-960B
echo tRNA loops are defined as loop1, loop2.
define knot1 903B, 970B
define knot2 904B, 969B
define knot3 908B, 914B
define knot4 919B, 956B
define knot5 928B, 942B
define knot6 930B, 940B
define knot7 933B, 937B
define knot8 954B, 958B
define knots knot1, knot2, knot3, knot4, knot5, knot6, knot7, knot8
echo tRNA knots are defined as knot1, ... , knot8. All knots are defined as knots. PS: I'm not sure what should be defined in here. This bases are non-WC complementary bases! That means that I've checked my PDB file and chosen these...
define anticodon 934-936B
echo Anticodon is defined as anticodon.
define end 972-976B
echo Free 3'-end is defined as end.
pause
restrict *B
backbone 100
background white
echo Thats the structure of glutamine tRNA (E.coli)
pause
select hel
color blue
wireframe 50
echo Helices are blue!
pause
select anticodon
color red
wireframe 50
echo Anticodon (CUG) is red!
pause
select loop1
color yellow
select loop2
color green
echo D-loop is yellow and T-loop is green
pause
select knots
color black
wireframe 50
echo Knots are black!
pause
select end
color orange
wireframe 50
echo 3'-end is orange.
pause
echo Try and find anything! Off you go. %))