view allpy/config.py @ 599:56d62d405021
pair_cores_all.py: close openned files to avoid error
error "Too many openned files" occured in child processes
multiprocessing seems to use old process when new python process
is created to avoid increasing of process number. Therefore
files openned in childred are not closed automatically
| author |
boris (kodomo) <bnagaev@gmail.com> |
| date |
Sun, 03 Apr 2011 17:05:32 +0400 |
| parents |
7a72febf12f6 |
| children |
71910cefe37a |
line source
1 delta = 2.0 # for geometrical core building
2 minsize = 20 # min size of returning cores
3 maxabsent = 0.15 # deprecated?
5 # defaults for set_pdb_chain
6 min_continuous_match = 5
12 # pdb download url (XXXX is pdb code place)
13 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb'
14 pdb_path = '/tmp/%s.pdb'
15 timeout = 10 # time in sec. for BRON-KERBOSH algorithm
18 # min part or new atoms in new alternative core
21 # max number of cores (including main core)
26 timeout_2 = 10 # bron-kerbosh for blocks
