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Дата индексирования: Sun Feb 3 12:23:34 2013
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allpy: a1307c0bb030 README.devel

allpy

view README.devel @ 642:a1307c0bb030

Added necessary hooks for monomer pickling [closes #35] Current implementation is lazy and does not store all monomer classes explicitly in some module. They are still generated on the fly. Some monomer classes have the same name as per PDB database. In order to avoid name clashes, we add underscores to classes, if same name class already exists. WARNING. This may and WILL cause trouble, if such clashes occur between different types of monomers, in which case different names will be generated for the same class depending on the order of loading modules. The only example of such clash in the current database is dna monomer "0AV" and rna "A2M", which both have name "2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE)"
author Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date Fri, 03 Jun 2011 16:49:44 +0400
parents b87eb91bd929
children
line source
1 Using library in-place
2 ======================
4 To use the library in-place, without installing, you have to add it's
5 directory to PYTHONPATH.
7 e.g, type this in your shell::
9 export PYTHONPATH=`pwd`
11 alternatively, you can type::
13 . ./SETPATH
15 which adds the right path to PYTHONPATH and also adds 'utils' directory
16 to PATH.
18 NEWS file
19 =========
21 NEWS file contains news that are important to the library users, not to the
22 devels. It must contain a word abot every change in any interfaces. It may
23 contain a word about bugfix, if that bugfix was important and could cause users
24 some grief. It must not contain anything else.
26 The file grows upwards (like blog, so that all the most important things are at
27 the top, like)
29 Example file format::
31 1.3.1 (2011-05-01)
32 * bugfix: the Moon was going to fall
34 1.3.0 (2011-04-15)
36 * new: new feature description
37 * new: new feature description
38 * change(!): critical library interface change
39 * change: change in the library interface
40 * bugfix: short bug summary, see #ticket
41 * bugfix: important bug that could destroy the Earth but did not hit trac