allpy
changeset 441:df68a5bc96fc
Fixed erroneous assertion in Alignment._replace_column_contents helper of Alignment.process
| author | Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> |
|---|---|
| date | Tue, 15 Feb 2011 21:46:05 +0300 |
| parents | 46793d078b74 |
| children | 4fd61a928aa1 |
| files | allpy/base.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line diff
1.1 --- a/allpy/base.py Tue Feb 15 21:34:05 2011 +0300 1.2 +++ b/allpy/base.py Tue Feb 15 21:46:05 2011 +0300 1.3 @@ -360,7 +360,7 @@ 1.4 self._wipe() 1.5 not_gap = lambda (a,b): a != None 1.6 for sequence, new_row in zip(self.sequences, new.rows_as_lists()): 1.7 - assert len(sequence) == len(new_row.sequence) 1.8 + assert len(sequence) == len(filter(None, new_row.sequence)) 1.9 non_gap_columns = [column 1.10 for column, monomer in zip(self.columns, new_row) 1.11 if monomer