| age |
author |
description |
| Fri, 18 Feb 2011 18:59:44 +0300 |
boris (netbook) |
geometrical_core: fix and improve options help |
| Fri, 18 Feb 2011 18:58:30 +0300 |
boris (netbook) |
geometrical_cores(): use alternative cores count information |
| Fri, 18 Feb 2011 18:48:37 +0300 |
boris (netbook) |
allpy/structure: remove Sequence.pdb_residues, add Monomer.pdb_residue |
| Fri, 18 Feb 2011 16:23:54 +0300 |
boris (netbook) |
blocks3d/wt: fix tempfile name |
| Fri, 18 Feb 2011 16:09:12 +0300 |
boris (netbook) |
geometrical-core: save model id when export to spt |
| Fri, 18 Feb 2011 15:49:54 +0300 |
boris (netbook) |
geometrical-core: add spt output |
| Fri, 18 Feb 2011 13:50:12 +0300 |
boris (netbook) |
structure: save_pdb() recovers old chain and model values |
| Fri, 18 Feb 2011 13:35:29 +0300 |
boris (netbook) |
structure: assign new chain (A,B,...) names when export |
| Fri, 18 Feb 2011 13:15:50 +0300 |
boris (netbook) |
pdb: fix superimposing and saving |
| Fri, 18 Feb 2011 01:03:21 +0300 |
boris |
pdb: export to pdb |
| Thu, 17 Feb 2011 18:35:59 +0300 |
Daniil Alexeyevsky |
mass_realign_blocks: Added flag --exclude to list sequence name to exclude when realigning |
| Thu, 17 Feb 2011 11:37:48 +0300 |
boris |
structure: fix a bug |
| Thu, 17 Feb 2011 11:36:34 +0300 |
boris |
rename allpy_pdb to structure (see #29) |
| Thu, 17 Feb 2011 11:28:51 +0300 |
boris |
pdb: fix superimpose |
| Thu, 17 Feb 2011 10:30:31 +0300 |
boris |
base: remove useless prints |
| Thu, 17 Feb 2011 10:28:33 +0300 |
boris |
pdb: use pdb code instead of sequence name as filename |
| Thu, 17 Feb 2011 10:17:45 +0300 |
boris |
blocks3d/wt: russian l10n |
| Thu, 17 Feb 2011 01:03:55 +0300 |
boris |
blocks3d/wt: README: add notes about symbolic links |
| Thu, 17 Feb 2011 00:56:42 +0300 |
boris |
blocks3d/wt: remove old temp files |
| Thu, 17 Feb 2011 00:34:55 +0300 |
boris |
blocks3d/wt: add README |
| Thu, 17 Feb 2011 00:32:05 +0300 |
boris |
blocks3d/wt: use text widget instead of message bow |
| Thu, 17 Feb 2011 00:27:09 +0300 |
boris |
blocks3d/wt: move remaining texts to xml file |
| Thu, 17 Feb 2011 00:17:37 +0300 |
boris |
blocks3d: add shebang and move to unix lineends |
| Thu, 17 Feb 2011 00:09:01 +0300 |
boris |
blocks3d/wt: move all messages and other texts to xml file |
| Wed, 16 Feb 2011 23:11:02 +0300 |
boris |
blocks3d/wt: code cleanup |
| Wed, 16 Feb 2011 22:35:02 +0300 |
boris |
blocks3d/wt: fix hardcode of blocks3d.py path |
| Wed, 16 Feb 2011 22:34:11 +0300 |
boris |
blocks3d/wt: remove useless file mktemp_string.C from project |
| Wed, 16 Feb 2011 21:26:54 +0300 |
Daniil Alexeyevsky |
Removed mktemp_string in favour of one-time mkdtemp invocation |
| Wed, 16 Feb 2011 20:33:46 +0300 |
Daniil Alexeyevsky |
Blocks3D_config: guess location of html.htm properly |
| Wed, 16 Feb 2011 20:20:07 +0300 |
Daniil Alexeyevsky |
Fixed setup.py to install allpy/data too (surprisingly, it did not do it itself) |
| Wed, 16 Feb 2011 00:01:34 +0300 |
boris (kodomo) |
merge: backout wrong commit |
| Wed, 16 Feb 2011 00:00:26 +0300 |
boris (kodomo) |
Backed out changeset 6070ac379ec8 |
| Tue, 15 Feb 2011 23:44:10 +0300 |
boris |
repeats: fix a bug: use "is" instead of == |
| Tue, 15 Feb 2011 23:30:06 +0300 |
Yashina Ksenia |
Automated merge with ssh://kodomo.fbb.msu.ru/allpy |
| Tue, 15 Feb 2011 23:27:08 +0300 |
Yashina Ksenia |
changed default config |
| Tue, 15 Feb 2011 23:18:03 +0300 |
Yashina Ksenia |
minor changes |
| Tue, 15 Feb 2011 23:25:36 +0300 |
boris |
repeats: use hash instead of tuple to distinguish intervals |
| Tue, 15 Feb 2011 22:51:10 +0300 |
Daniil Alexeyevsky |
mass_realign_blocks invokes Block.process(*, False, False), which is the only seemingly working version yet |
| Tue, 15 Feb 2011 22:47:34 +0300 |
Daniil Alexeyevsky |
Simple logical bug in processors.fix_missing |
| Tue, 15 Feb 2011 22:45:34 +0300 |
Daniil Alexeyevsky |
Tested and fixed Block.process(*, False, False) |
| Tue, 15 Feb 2011 22:32:14 +0300 |
Daniil Alexeyevsky |
processors: muscle removes empty rows from output; fix this by adding necessary empty sequences to output block |
| Tue, 15 Feb 2011 22:16:35 +0300 |
Daniil Alexeyevsky |
processors: Muscle() now takes care of restoring sequence ordering after command run |
| Tue, 15 Feb 2011 21:46:05 +0300 |
Daniil Alexeyevsky |
Fixed erroneous assertion in Alignment._replace_column_contents helper of Alignment.process |
| Tue, 15 Feb 2011 21:34:05 +0300 |
Daniil Alexeyevsky |
mass_realign_blocks treats each column range as a separate block |
| Tue, 15 Feb 2011 21:23:48 +0300 |
Daniil Alexeyevsky |
Fixed processor invokation in mass_realign_blocks |
| Tue, 15 Feb 2011 21:22:30 +0300 |
Daniil Alexeyevsky |
mass_realign_blocks treats digits as valid protein monomers |
| Tue, 15 Feb 2011 21:17:16 +0300 |
Daniil Alexeyevsky |
Name error fix in mass_realign_blocks |
| Tue, 15 Feb 2011 21:11:17 +0300 |
Daniil Alexeyevsky |
Fixed command line processing for mass_realine_blocks.py |
| Tue, 15 Feb 2011 21:03:19 +0300 |
Daniil Alexeyevsky |
Added mass_realign_blocks util to apply muscle to multiple blocks in multiple files |
| Tue, 15 Feb 2011 20:29:53 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Tue, 15 Feb 2011 20:29:48 +0300 |
Daniil Alexeyevsky |
Added util realign_block (almost exact copy of flush_left) |
| Tue, 15 Feb 2011 00:07:57 +0300 |
boris |
blocks3d/wt improvement |
| Mon, 14 Feb 2011 22:21:39 +0300 |
boris |
geometrical-core: export to fasta and msf |
| Mon, 14 Feb 2011 22:20:31 +0300 |
boris |
fix Markup |
| Mon, 14 Feb 2011 22:17:44 +0300 |
boris |
fix MsfIo |
| Mon, 14 Feb 2011 21:37:19 +0300 |
boris |
markup.py: add Markup.__setitem__ methor for convenience |
| Mon, 14 Feb 2011 21:04:47 +0300 |
boris |
improve markup module: |
| Mon, 14 Feb 2011 19:32:51 +0300 |
boris |
add class Markup (see #30) |
| Mon, 14 Feb 2011 16:21:29 +0300 |
boris |
geometrical-core: now can read from msf |
| Mon, 14 Feb 2011 16:19:42 +0300 |
boris |
msf io: fix bugs |
