| age |
author |
description |
| Sat, 04 Dec 2010 00:04:48 +0300 |
boris |
allpy: allpy_pdb --> allpy.pdb |
| Fri, 03 Dec 2010 23:37:16 +0300 |
boris |
allpy: monomers improvements |
| Fri, 03 Dec 2010 23:24:43 +0300 |
boris |
allpy: monomers completed |
| Fri, 03 Dec 2010 22:57:37 +0300 |
boris |
allpy: add documentation to base.Sequence |
| Fri, 03 Dec 2010 22:54:48 +0300 |
boris |
allpy: correct unworking code |
| Fri, 03 Dec 2010 22:28:06 +0300 |
boris (netbook) |
allpy: function rename |
| Fri, 03 Dec 2010 22:24:00 +0300 |
boris (netbook) |
allpy: protein.py, dna.py, rna.py drafts |
| Fri, 03 Dec 2010 22:19:13 +0300 |
boris (netbook) |
allpy: add base.py1.1.0 |
| Fri, 03 Dec 2010 22:10:53 +0300 |
boris (netbook) |
allpy: fix old changes in main classess attributes |
| Tue, 30 Nov 2010 17:11:25 +0300 |
boris (netbook) |
rm source.py |
| Tue, 30 Nov 2010 17:11:03 +0300 |
boris (netbook) |
allpy: add protein and source classes |
| Tue, 30 Nov 2010 17:10:25 +0300 |
boris (netbook) |
allpy: start moving to new class interfaces |
| Sun, 28 Nov 2010 17:40:11 +0300 |
boris |
repeats: fix bug with same lines in output file |
| Sat, 27 Nov 2010 22:42:36 +0300 |
boris |
repeats: remove useless file |
| Sat, 27 Nov 2010 22:41:18 +0300 |
boris |
repeats: 1) Repeat --> Interval, RepeatGroup --> IntervalGroup |
| Sat, 27 Nov 2010 21:44:26 +0300 |
boris |
Backed out changeset 684ff5579345 |
| Sat, 27 Nov 2010 21:44:11 +0300 |
boris |
repeats: join fragments before joining |
| Sat, 27 Nov 2010 19:50:57 +0300 |
boris |
repeats: fix +-1 problem (interval ends) |
| Sat, 27 Nov 2010 19:21:17 +0300 |
boris |
repeats: rename group_start and group_end to group_real_start and group_real_end |
| Sat, 27 Nov 2010 18:47:13 +0300 |
boris |
repeats: universal input format parser |
| Sat, 27 Nov 2010 18:41:20 +0300 |
boris |
repeats: new format of input file in test |
| Fri, 26 Nov 2010 18:38:00 +0300 |
boris (netbook) |
repeats: tab-separated output |
| Fri, 26 Nov 2010 12:24:16 +0300 |
boris (netbook) |
repeats: fix, add test |
| Wed, 24 Nov 2010 14:57:24 +0300 |
boris (netbook) |
repeats: documentation; doctest corrected |
| Wed, 24 Nov 2010 00:51:56 +0300 |
boris |
repeats: output improvents |
| Wed, 24 Nov 2010 00:35:30 +0300 |
boris |
repeats: output improvements |
| Wed, 24 Nov 2010 00:11:15 +0300 |
boris |
repeats: improvements |
| Tue, 23 Nov 2010 23:58:54 +0300 |
boris |
merge |
| Sun, 21 Nov 2010 13:16:36 +0300 |
boris |
remove useless self-made intervl container libs |
| Tue, 23 Nov 2010 18:34:54 +0300 |
boris (netbook) |
repeats: fix end+1 problem on input. NB end+1 problem on output |
| Tue, 23 Nov 2010 18:07:08 +0300 |
boris (netbook) |
repeats: test: improvements |
| Tue, 23 Nov 2010 17:59:48 +0300 |
boris (netbook) |
repeats: fixes |
| Tue, 23 Nov 2010 17:53:02 +0300 |
boris (netbook) |
repeats: fixes |
| Tue, 23 Nov 2010 17:29:43 +0300 |
boris (netbook) |
repeats: add program for run and input example |
| Tue, 23 Nov 2010 17:15:02 +0300 |
boris (netbook) |
pereats: add test with "-" ori |
| Tue, 23 Nov 2010 17:11:56 +0300 |
boris (netbook) |
repeats: fix mismatch (there was no mistake) |
| Tue, 23 Nov 2010 17:10:23 +0300 |
boris (netbook) |
repeats: improve repeat.__repr__; find doctest mismatch |
| Tue, 23 Nov 2010 16:55:03 +0300 |
boris (netbook) |
repeats: doctest completed |
| Tue, 23 Nov 2010 16:34:19 +0300 |
boris (netbook) |
repeats: fix the mistake |
| Tue, 23 Nov 2010 16:33:38 +0300 |
boris (netbook) |
repeats: test improvements |
| Tue, 23 Nov 2010 16:28:20 +0300 |
boris (netbook) |
repeats: clear code |
| Tue, 23 Nov 2010 16:26:14 +0300 |
boris (netbook) |
repeats: ugly draft completed |
| Tue, 23 Nov 2010 15:28:24 +0300 |
boris (netbook) |
repeats: fixes |
| Tue, 23 Nov 2010 15:22:36 +0300 |
boris (netbook) |
merge |
| Tue, 23 Nov 2010 15:21:24 +0300 |
boris (netbook) |
repeat: fixes, doctest, config |
| Fri, 19 Nov 2010 11:44:04 +0300 |
boris (netbook) |
repeats: fix in formula for ori |
| Mon, 22 Nov 2010 14:05:30 +0300 |
Daniil Alexeyevsky |
Updated debian package revision number to force installation of updated python-allpy |
| Mon, 22 Nov 2010 14:01:31 +0300 |
Daniil Alexeyevsky |
(DO NOT PUSH THE NON-WORKING CODE!) Fixed stubs in allpy/markup.py |
| Mon, 22 Nov 2010 13:43:23 +0300 |
Daniil Alexeyevsky |
Added rules for building Debian packages. |
| Mon, 22 Nov 2010 13:40:51 +0300 |
Daniil Alexeyevsky |
Added distutuils setup.py which seems to work fine |
| Mon, 22 Nov 2010 13:36:48 +0300 |
Daniil Alexeyevsky |
Converted geometrical_core.py to a proper UNIX script. |
| Fri, 19 Nov 2010 00:17:11 +0300 |
boris |
repeats: function repeat_joiner.full_repeats() seems completed |
| Thu, 18 Nov 2010 23:51:20 +0300 |
boris |
repeats: preorder traversal for repeat_group. |
| Thu, 18 Nov 2010 22:07:49 +0300 |
boris |
create branch for old implementation of geometrical-coregeometrical-core-old |
| Thu, 18 Nov 2010 21:42:16 +0300 |
Daniil Alexeyevsky |
Removed old implementation of geometrical_core. |
| Thu, 18 Nov 2010 19:38:05 +0300 |
Daniil Alexeyevsky |
Renamed lib to allpy |
| Thu, 18 Nov 2010 00:01:07 +0300 |
boris (netbook) |
repeats: visitors for visiting tree items (almost) completed |
| Wed, 17 Nov 2010 21:06:18 +0300 |
boris (netbook) |
merge |
| Wed, 17 Nov 2010 21:04:19 +0300 |
boris (netbook) |
repeat joining program -- some drafts |
| Wed, 17 Nov 2010 21:02:10 +0300 |
boris (netbook) |
rename some Alignment member function and attributes |
