| age |
author |
description |
| Thu, 24 Mar 2011 20:36:19 +0300 |
Daniil Alexeyevsky |
Fixed usecase1 to use realign instead of process |
| Thu, 24 Mar 2011 20:22:46 +0300 |
boris (kodomo) |
fix bug in continuous_blocks() |
| Thu, 17 Mar 2011 16:56:48 +0300 |
boris (kodomo) |
processors: add no_gaps parameter to Muscle processor |
| Thu, 17 Mar 2011 11:41:15 +0300 |
boris (kodomo) |
backout (incorrect commit) |
| Thu, 17 Mar 2011 11:39:58 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Thu, 17 Mar 2011 11:26:53 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Wed, 16 Mar 2011 22:50:50 +0300 |
boris (kodomo) |
structure: fix bug in set_pdb_chain() |
| Wed, 16 Mar 2011 22:36:48 +0300 |
boris (kodomo) |
fix a bug |
| Wed, 16 Mar 2011 22:31:24 +0300 |
boris (kodomo) |
minor fix: use column2pos method |
| Wed, 16 Mar 2011 22:26:42 +0300 |
boris (kodomo) |
move generation of html to method of structure.BlockMixin |
| Wed, 16 Mar 2011 22:15:19 +0300 |
boris (kodomo) |
fix blocks_to_file() |
| Wed, 16 Mar 2011 22:04:58 +0300 |
boris (kodomo) |
add methods to save and load list of blocks from file |
| Wed, 16 Mar 2011 21:34:06 +0300 |
boris (kodomo) |
structure: move column2pos to separate function |
| Wed, 16 Mar 2011 20:09:19 +0300 |
boris (kodomo) |
structure: pick out pair_core_parts() |
| Wed, 16 Mar 2011 19:59:52 +0300 |
boris (kodomo) |
structure.py: fixes |
| Wed, 16 Mar 2011 19:50:06 +0300 |
boris (kodomo) |
documentation cleanup |
| Wed, 16 Mar 2011 19:45:56 +0300 |
boris (kodomo) |
gpaph: fix connected_components() |
| Wed, 16 Mar 2011 19:42:58 +0300 |
boris (kodomo) |
graph: improve expand_to_max_clique() |
| Wed, 09 Mar 2011 17:10:44 +0300 |
boris (kodomo) |
merge |
| Fri, 04 Mar 2011 15:16:28 +0300 |
boris (kodomo) |
structure.py: separate pdb-loading from auto_pdb |
| Fri, 04 Mar 2011 21:20:44 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Mon, 28 Feb 2011 22:40:16 +0300 |
Daniil Alexeyevsky |
allpy.processors: make temporary files named |
| Tue, 01 Mar 2011 00:17:13 +0300 |
boris |
Automated merge with ssh://kodomo/allpy |
| Mon, 28 Feb 2011 16:19:06 +0300 |
boris |
blocks3s/wt: improve explanations (translations) |
| Mon, 28 Feb 2011 16:14:27 +0300 |
boris |
code cleanup |
| Mon, 28 Feb 2011 16:11:20 +0300 |
boris |
kill blocks3d process in widget destructor |
| Mon, 28 Feb 2011 13:27:31 +0300 |
boris |
blocks3d/wt: remove useless includes from header file |
| Mon, 28 Feb 2011 22:20:59 +0300 |
Daniil Alexeyevsky |
Moved freqs.py to utils, since it is not a test |
| Mon, 28 Feb 2011 22:18:49 +0300 |
Daniil Alexeyevsky |
Removed some obsolete broken tests |
| Mon, 28 Feb 2011 22:12:56 +0300 |
Daniil Alexeyevsky |
Makefile: renamed target test to tests to implicitly make it PHONY |
| Mon, 28 Feb 2011 22:06:34 +0300 |
Daniil Alexeyevsky |
Run of make force-doc: updated autogenerated sphinx docs |
| Mon, 28 Feb 2011 22:06:03 +0300 |
Daniil Alexeyevsky |
Makefile: added rules "tests" and "doc" for running tests and rebuilding documentation |
| Mon, 28 Feb 2011 21:36:15 +0300 |
Daniil Alexeyevsky |
codes.py, mkcodes: Added codes B, Z. Uniformly uppercased all entries. (Fixes #34) |
| Mon, 28 Feb 2011 21:34:38 +0300 |
Daniil Alexeyevsky |
test_base: Removed tests for private interfaces (which changed) |
| Mon, 28 Feb 2011 21:17:41 +0300 |
Daniil Alexeyevsky |
Reimplemented flush(direction) as processor1.2.0 |
| Mon, 28 Feb 2011 19:24:28 +0300 |
Daniil Alexeyevsky |
mkcodes.py, codes.py: remove entries with 1-letter code longer than 1 letter |
| Mon, 28 Feb 2011 19:19:34 +0300 |
Daniil Alexeyevsky |
Added .hgignore rules to ignore files and directories named temp and temp.* anywhere |
| Mon, 28 Feb 2011 19:17:07 +0300 |
Daniil Alexeyevsky |
Added Makefile to automate building of codes.py |
| Mon, 28 Feb 2011 19:15:31 +0300 |
Daniil Alexeyevsky |
Updated allpy/data/codes.py from fresh components.cif |
| Mon, 28 Feb 2011 19:14:48 +0300 |
Daniil Alexeyevsky |
mkcodes.py: add vim modeline to the output |
| Mon, 28 Feb 2011 19:11:23 +0300 |
Daniil Alexeyevsky |
Clean rewrite of mkcodes.py (helper script for allpy/data) |
| Mon, 28 Feb 2011 15:16:27 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Sat, 26 Feb 2011 18:59:48 +0300 |
Daniil Alexeyevsky |
Chaned sequence name format in extract_pfam.py to ">PDBID_PDBCHAIN ORIGINAL_NAME ORIGINAL_DESCRIPTION LIST_OF_ASSOCIATED_PDB_FRAGMENTS" |
| Sat, 26 Feb 2011 18:52:23 +0300 |
Daniil Alexeyevsky |
Added util extract_pfam |
| Sun, 27 Feb 2011 23:49:54 +0300 |
boris (kodomo) |
structure: fix bug add_surrounded_columns() |
| Sat, 26 Feb 2011 21:02:21 +0300 |
boris |
blocks3d/wt: default timeout2=-1 (unlimited) |
| Sat, 26 Feb 2011 20:59:43 +0300 |
boris |
blocks3d/wt: add Reset button |
| Sat, 26 Feb 2011 20:57:27 +0300 |
boris |
blocks3d/wt: fix segmentation fault |
| Sat, 26 Feb 2011 20:42:16 +0300 |
boris |
blocks3d/wt: fix script for debugging |
| Sat, 26 Feb 2011 19:26:13 +0300 |
boris (kodomo) |
blocks3d/wt: store all tempfiles from history |
| Sat, 26 Feb 2011 18:06:45 +0300 |
boris (kodomo) |
blocks3d(): fix a bug |
| Sat, 26 Feb 2011 18:05:10 +0300 |
boris (kodomo) |
blocks3d(): add primary_cliques parameter |
| Fri, 25 Feb 2011 18:00:20 +0300 |
boris (kodomo) |
structure: code cleanup |
| Thu, 24 Feb 2011 23:51:52 +0300 |
boris (kodomo) |
graph.py: refactoring |
| Thu, 24 Feb 2011 17:37:28 +0300 |
boris (kodomo) |
graph.py: optimization |
| Thu, 24 Feb 2011 11:26:47 +0300 |
boris (kodomo) |
structure: fix regular expression for pdb_id_parse |
| Wed, 23 Feb 2011 23:10:47 +0300 |
boris (kodomo) |
blocks3d(): fix a bug |
| Wed, 23 Feb 2011 22:16:02 +0300 |
boris (kodomo) |
geometrical_core(): fix a bug |
| Wed, 23 Feb 2011 22:13:50 +0300 |
boris (kodomo) |
structure.py: fix model in regular expression |
| Wed, 23 Feb 2011 20:18:15 +0300 |
boris (kodomo) |
fix add_surrounded_columns() |
