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BLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= U00096 U00096.2 Escherichia coli str. K-12 substr. MG1655,
complete genome.
(927 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE006203 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006196 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006175 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006168 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006130 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006100 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006064 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.6
AE006202 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006163 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006158 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006129 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006126 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006120 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006111 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006094 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006083 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5
AE006081 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.5

>AE006203 Pasteurella multocida subsp. multocida str. Pm70 section 170
of 204 of the complete genome.
Length = 10697

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 193 cgcatgattctgctt 207
|||||||||||||||
Sbjct: 1050 cgcatgattctgctt 1064


>AE006196 Pasteurella multocida subsp. multocida str. Pm70 section 163
of 204 of the complete genome.
Length = 9255

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 427 tgccagtttttcgtc 441
|||||||||||||||
Sbjct: 8172 tgccagtttttcgtc 8186


>AE006175 Pasteurella multocida subsp. multocida str. Pm70 section 142
of 204 of the complete genome.
Length = 9799

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 506 actgcggcgttgtct 520
|||||||||||||||
Sbjct: 8976 actgcggcgttgtct 8962


>AE006168 Pasteurella multocida subsp. multocida str. Pm70 section 135
of 204 of the complete genome.
Length = 11367

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 856 aggagagggggcgaa 870
|||||||||||||||
Sbjct: 7452 aggagagggggcgaa 7466


>AE006130 Pasteurella multocida subsp. multocida str. Pm70 section 97
of 204 of the complete genome.
Length = 10029

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 601 ataacttagtccttg 615
|||||||||||||||
Sbjct: 5800 ataacttagtccttg 5814


>AE006100 Pasteurella multocida subsp. multocida str. Pm70 section 67
of 204 of the complete genome.
Length = 13317

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 613 ttgttcatgtaacca 627
|||||||||||||||
Sbjct: 5960 ttgttcatgtaacca 5946


>AE006064 Pasteurella multocida subsp. multocida str. Pm70 section 31
of 204 of the complete genome.
Length = 10727

Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 53 gcggtaagccgccag 67
|||||||||||||||
Sbjct: 6160 gcggtaagccgccag 6146



Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 557 ataccgccaatgct 570
||||||||||||||
Sbjct: 2968 ataccgccaatgct 2955


>AE006202 Pasteurella multocida subsp. multocida str. Pm70 section 169
of 204 of the complete genome.
Length = 10029

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 723 tttctgcggcaccg 736
||||||||||||||
Sbjct: 1334 tttctgcggcaccg 1321


>AE006163 Pasteurella multocida subsp. multocida str. Pm70 section 130
of 204 of the complete genome.
Length = 10823

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 199 attctgcttggaaa 212
||||||||||||||
Sbjct: 2705 attctgcttggaaa 2718


>AE006158 Pasteurella multocida subsp. multocida str. Pm70 section 125
of 204 of the complete genome.
Length = 11632

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 598 gtaataacttagtc 611
||||||||||||||
Sbjct: 8614 gtaataacttagtc 8627


>AE006129 Pasteurella multocida subsp. multocida str. Pm70 section 96
of 204 of the complete genome.
Length = 10549

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 660 gcgattgccagaga 673
||||||||||||||
Sbjct: 2151 gcgattgccagaga 2164



Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 628 ggcgagtgcttcac 641
||||||||||||||
Sbjct: 2563 ggcgagtgcttcac 2550


>AE006126 Pasteurella multocida subsp. multocida str. Pm70 section 93
of 204 of the complete genome.
Length = 12635

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 643 ataggcgtcgtgac 656
||||||||||||||
Sbjct: 9400 ataggcgtcgtgac 9413


>AE006120 Pasteurella multocida subsp. multocida str. Pm70 section 87
of 204 of the complete genome.
Length = 11573

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 714 gcaggatagtttct 727
||||||||||||||
Sbjct: 1438 gcaggatagtttct 1451


>AE006111 Pasteurella multocida subsp. multocida str. Pm70 section 78
of 204 of the complete genome.
Length = 10062

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 138 gaaattgaagtgcc 151
||||||||||||||
Sbjct: 7040 gaaattgaagtgcc 7053


>AE006094 Pasteurella multocida subsp. multocida str. Pm70 section 61
of 204 of the complete genome.
Length = 11956

Score = 28.2 bits (14), Expect = 6.5
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 407 tgaatgataaaatcttcc 424
|||||||||||| |||||
Sbjct: 6314 tgaatgataaaaccttcc 6297


>AE006083 Pasteurella multocida subsp. multocida str. Pm70 section 50
of 204 of the complete genome.
Length = 12365

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 358 atcatcaaccacaa 371
||||||||||||||
Sbjct: 2471 atcatcaaccacaa 2458


>AE006081 Pasteurella multocida subsp. multocida str. Pm70 section 48
of 204 of the complete genome.
Length = 11341

Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 780 agcgaccttgccgg 793
||||||||||||||
Sbjct: 3514 agcgaccttgccgg 3527


Database: pm
Posted date: Oct 28, 2009 6:14 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 204
Number of Hits to DB: 19,353
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 927
Length of database: 2,269,587
Length adjustment: 16
Effective length of query: 911
Effective length of database: 2,266,323
Effective search space: 2064620253
Effective search space used: 2064620253
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)