Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mirror.msu.net/pub/gentoo-portage/sci-biology/tophat/tophat-1.0.12.ebuild Дата изменения: Sun Aug 9 03:38:18 2015 Дата индексирования: Mon Apr 11 08:08:03 2016 Кодировка:

# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$

EAPI="2"

inherit autotools

DESCRIPTION="A fast splice junction mapper for RNA-Seq reads"
HOMEPAGE="http://tophat.cbcb.umd.edu/"
SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz"

LICENSE="Artistic"
SLOT="0"
IUSE=""
KEYWORDS="amd64 x86"

DEPEND=""
RDEPEND="sci-biology/bowtie"

src_prepare() {
# fix missing includes
sed -i '/#include / a #include ' "${S}/src/gff_juncs.cpp" || die
sed -i \
-e '/#include / a #include ' \
"${S}/src/prep_reads.cpp" \
"${S}/src/extract_reads.cpp" || die
# fix parallel make race
sed -i -e 's/\$(top_builddir)\/src\///g' src/Makefile.am || die
# remove broken arch-dependent CFLAGS setting
perl -i -ne 'print unless /case "\${host_cpu}-\${host_os}" in/../^esac/' configure.ac || die
eautoreconf
}

src_install() {
einstall || die
dodoc AUTHORS NEWS THANKS
}