|
Domain
|
Instances
|
PDB entries
|
DNA/RNA bond instances
|
|---|
2OG-FeII_Oxy (2OG-Fe(II) oxygenase superfamily)
 |
12 | 12 |
12 |
| 3_5_exonuc (3'-5' exonuclease)
|
12 | 12 |
12 |
| 5_3_exonuc (5'-3' exonuclease, C-terminal SAM fold)
|
1 | 1 |
0 |
| 5_3_exonuc_N (5'-3' exonuclease, N-terminal resolvase-like domain)
|
3 | 2 |
1 |
| 7kD_DNA_binding (7kD DNA-binding domain)
|
22 | 19 |
21 |
| AAA (ATPase family associated with various cellular activities (AAA))
|
1 | 1 |
1 |
| Aconitase (Aconitase family (aconitate hydratase))
|
4 | 1 |
3 |
| Aconitase_C (Aconitase C-terminal domain)
|
2 | 1 |
2 |
| Ada_Zn_binding (Metal binding domain of Ada)
|
2 | 2 |
2 |
| Adenine_glyco (Methyladenine glycosylase)
|
1 | 1 |
1 |
| AHSA1 (Activator of Hsp90 ATPase homolog 1-like protein)
|
1 | 1 |
1 |
| AlkA_N (AlkA N-terminal domain)
|
34 | 9 |
0 |
| Ank (Ankyrin repeat)
|
13 | 3 |
0 |
| Anticodon_1 (Anticodon-binding domain)
|
15 | 9 |
15 |
| AP2 (AP2 domain)
|
1 | 1 |
1 |
| AP_endonuc_2 (Xylose isomerase-like TIM barrel)
|
4 | 3 |
3 |
| AraC_E_bind (Bacterial transcription activator, effector binding domain)
|
4 | 1 |
0 |
| Arc (Arc-like DNA binding domain)
|
12 | 3 |
12 |
| Arch_ATPase (Archaeal ATPase)
|
36 | 4 |
0 |
| Arg_repressor (Arginine repressor, DNA binding domain)
|
5 | 2 |
5 |
| Arg_repressor_C (Arginine repressor, C-terminal domain)
|
1 | 1 |
0 |
| Arg_tRNA_synt_N (Arginyl tRNA synthetase N terminal domain)
|
2 | 2 |
2 |
| ARID (ARID/BRIGHT DNA binding domain)
|
2 | 2 |
2 |
| AsnC_trans_reg (AsnC family)
|
1 | 1 |
0 |
| Asparaginase (Asparaginase)
|
2 | 1 |
0 |
| ATP-synt_ab (ATP synthase alpha/beta family, nucleotide-binding domain)
|
32 | 6 |
2 |
| Autoind_bind (Autoinducer binding domain)
|
8 | 2 |
0 |
| B3_4 (B3/4 domain)
|
2 | 2 |
1 |
| B5 (tRNA synthetase B5 domain)
|
2 | 2 |
0 |
| Bac_DnaA_C (Bacterial dnaA protein helix-turn-helix domain)
|
1 | 1 |
1 |
| Bac_DNA_binding (Bacterial DNA-binding protein)
|
26 | 11 |
26 |
| BAF (Barrier to autointegration factor)
|
1 | 1 |
1 |
| BamHI (Restriction endonuclease BamHI)
|
8 | 4 |
7 |
| Beta-trefoil (Beta-trefoil)
|
6 | 6 |
6 |
| BHD_1 (Rad4 beta-hairpin domain 1)
|
2 | 2 |
2 |
| BHD_2 (Rad4 beta-hairpin domain 2)
|
2 | 2 |
2 |
| BHD_3 (Rad4 beta-hairpin domain 3)
|
2 | 2 |
2 |
| BRCA-2_helical (BRCA2, helical)
|
1 | 1 |
0 |
| BRCA-2_OB1 (BRCA2, oligonucleotide/oligosaccharide-binding, domain 1)
|
1 | 1 |
0 |
| BRCA-2_OB3 (BRCA2, oligonucleotide/oligosaccharide-binding, domain 3)
|
1 | 1 |
1 |
| BRF1 (Brf1-like TBP-binding domain)
|
4 | 1 |
0 |
| BrkDBD (Brinker DNA-binding domain)
|
1 | 1 |
1 |
| Bromo_coat (Bromovirus coat protein)
|
3 | 1 |
3 |
| Bse634I (Cfr10I/Bse634I restriction endonuclease)
|
8 | 3 |
8 |
| Btz (CASC3/Barentsz eIF4AIII binding)
|
14 | 4 |
0 |
| bZIP_1 (bZIP transcription factor)
|
49 | 23 |
48 |
| bZIP_2 (Basic region leucine zipper)
|
44 | 21 |
43 |
| C1-set (Immunoglobulin C1-set domain)
|
36 | 15 |
0 |
| CAF1 (CAF1 family ribonuclease)
|
2 | 1 |
2 |
| CAT_RBD (CAT RNA binding domain)
|
2 | 1 |
2 |
| CBFD_NFYB_HMF (Histone-like transcription factor (CBF/NF-Y) and archaeal histone)
|
6 | 3 |
6 |
| CBF_beta (Core binding factor beta subunit)
|
3 | 2 |
0 |
| CcdA (Post-segregation antitoxin CcdA)
|
4 | 2 |
4 |
| CDC13-DNA-bind (CDC13, ssDNA binding)
|
1 | 1 |
1 |
| Cdc6_C (CDC6, C terminal)
|
3 | 2 |
3 |
| CENP-B_N (CENP-B N-terminal DNA-binding domain)
|
1 | 1 |
1 |
| CenpB-DNA-bind (Centromere binding protein B, DNA binding)
|
1 | 1 |
1 |
| CHORD (CHORD)
|
4 | 1 |
3 |
| cNMP_binding (Cyclic nucleotide-binding domain)
|
24 | 15 |
7 |
| Como_LCP (Large coat protein)
|
2 | 2 |
1 |
| Como_SCP (Small coat protein)
|
2 | 2 |
0 |
| CPSF_A (CPSF A subunit region)
|
2 | 2 |
0 |
| Cro (Cro)
|
8 | 3 |
6 |
| Crp (Bacterial regulatory proteins, crp family)
|
23 | 14 |
23 |
| CSD ('Cold-shock' DNA-binding domain)
|
3 | 2 |
3 |
| CsrA (Global regulator protein family)
|
2 | 1 |
2 |
| Cucumo_2B (Cucumovirus protein 2B)
|
2 | 1 |
2 |
| Cucumo_coat (Cucumovirus coat protein)
|
3 | 1 |
1 |
| CUT (CUT domain)
|
4 | 3 |
4 |
| Cyclin_N (Cyclin, N-terminal domain)
|
2 | 1 |
2 |
| DALR_1 (DALR anticodon binding domain)
|
2 | 2 |
2 |
| DALR_2 (DALR domain)
|
1 | 1 |
1 |
| dCMP_cyt_deam_1 (Cytidine and deoxycytidylate deaminase zinc-binding region)
|
4 | 1 |
4 |
| DEAD (DEAD/DEAH box helicase)
|
13 | 7 |
12 |
| DHO_dh (Dihydroorotate dehydrogenase)
|
36 | 4 |
0 |
| DKCLD (DKCLD (NUC011) domain)
|
2 | 2 |
2 |
| DnaB (DnaB-like helicase N terminal domain)
|
2 | 1 |
1 |
| DnaB_bind (DnaB-helicase binding domain of primase)
|
2 | 1 |
0 |
| DnaB_C (DnaB-like helicase C terminal domain)
|
2 | 1 |
2 |
| DNA_binding_1 (6-O-methylguanine DNA methyltransferase, DNA binding domain)
|
6 | 3 |
5 |
| DNA_ligase_aden (NAD-dependent DNA ligase adenylation domain)
|
1 | 1 |
1 |
| DNA_ligase_A_C (ATP dependent DNA ligase C terminal region)
|
1 | 1 |
1 |
| DNA_ligase_A_M (ATP dependent DNA ligase domain)
|
6 | 3 |
6 |
| DNA_ligase_A_N (DNA ligase N terminus)
|
1 | 1 |
1 |
| DNA_ligase_OB (NAD-dependent DNA ligase OB-fold domain)
|
1 | 1 |
1 |
| DNA_ligase_ZBD (NAD-dependent DNA ligase C4 zinc finger domain)
|
1 | 1 |
1 |
| DNA_methylase (C-5 cytosine-specific DNA methylase)
|
27 | 26 |
27 |
| DNA_photolyase (DNA photolyase)
|
6 | 3 |
6 |
| DNA_pol3_alpha (Bacterial DNA polymerase III alpha subunit)
|
7 | 4 |
5 |
| DNA_pol3_beta (DNA polymerase III beta subunit, N-terminal domain)
|
2 | 1 |
2 |
| DNA_pol3_beta_2 (DNA polymerase III beta subunit, central domain)
|
2 | 1 |
1 |
| DNA_pol3_beta_3 (DNA polymerase III beta subunit, C-terminal domain)
|
2 | 1 |
0 |
| DNA_pol_A (DNA polymerase family A)
|
84 | 77 |
78 |
| DNA_pol_B (DNA polymerase family B)
|
45 | 13 |
38 |
| DNA_pol_B_2 (DNA polymerase type B, organellar and viral)
|
15 | 6 |
14 |
| DNA_pol_B_exo (DNA polymerase family B, exonuclease domain)
|
64 | 14 |
28 |
| DNA_pol_lambd_f (Fingers domain of DNA polymerase lambda)
|
143 | 128 |
143 |
| DNA_primase_S (Eukaryotic and archaeal DNA primase small subunit)
|
2 | 1 |
2 |
| DNA_RNApol_7kD (DNA directed RNA polymerase, 7 kDa subunit)
|
25 | 24 |
0 |
| DNA_topoisoIV (DNA gyrase/topoisomerase IV, subunit A)
|
2 | 1 |
1 |
| dsrm (Double-stranded RNA binding motif)
|
23 | 12 |
17 |
| DSS1_SEM1 (DSS1/SEM1 family)
|
2 | 1 |
0 |
| DUF1610 (Domain of unknown function (DUF1610))
|
16 | 2 |
11 |
| E2F_TDP (E2F/DP family winged-helix DNA-binding domain)
|
2 | 1 |
2 |
| EBV-NA1 (Epstein Barr virus nuclear antigen-1, DNA-binding domain)
|
2 | 1 |
2 |
| EcoRI (Restriction endonuclease EcoRI)
|
7 | 7 |
7 |
| EcoRII-C (EcoRII C terminal)
|
10 | 3 |
10 |
| EFG_C (Elongation factor G C-terminus)
|
5 | 5 |
2 |
| EFG_IV (Elongation factor G, domain IV)
|
5 | 4 |
1 |
| eIF-1a (Translation initiation factor 1A / IF-1)
|
2 | 2 |
1 |
| EndIII_4Fe-2S (Iron-sulfur binding domain of endonuclease III)
|
6 | 6 |
0 |
| Endonuc-BglII (Restriction endonuclease BglII)
|
8 | 4 |
8 |
| Endonuc-BsobI (Restriction endonuclease BsobI)
|
2 | 1 |
2 |
| Endonuc-dimeris (T4 recombination endonuclease VII, dimerisation)
|
4 | 2 |
4 |
| Endonuc-EcoRV (Restriction endonuclease EcoRV)
|
55 | 27 |
55 |
| Endonuc-FokI_C (Restriction endonuclease FokI, C terminal)
|
1 | 1 |
1 |
| Endonuc-HincII (Restriction endonuclease HincII)
|
52 | 18 |
48 |
| Endonuc-MspI (Restriction endonuclease MspI)
|
4 | 2 |
4 |
| Endonuc-PvuII (Restriction endonuclease PvuII)
|
10 | 5 |
10 |
| Endonuclease_1 (Endonuclease I)
|
6 | 2 |
6 |
| Endonuclease_5 (Endonuclease V)
|
4 | 2 |
4 |
| Endonuclease_7 (Recombination endonuclease VII)
|
4 | 2 |
4 |
| ERCC4 (ERCC4 domain)
|
2 | 1 |
1 |
| Ets (Ets-domain)
|
22 | 15 |
22 |
| Exc (Excisionase-like protein)
|
7 | 3 |
6 |
| Exonuc_V_gamma (Exodeoxyribonuclease V, gamma subunit)
|
2 | 1 |
2 |
| Exonuc_X-T (Exonuclease)
|
4 | 1 |
2 |
| Exo_endo_phos (Endonuclease/Exonuclease/phosphatase family)
|
10 | 6 |
10 |
| FadR_C (FadR C-terminal domain)
|
4 | 2 |
0 |
| FAD_binding_7 (FAD binding domain of DNA photolyase)
|
6 | 3 |
6 |
| Fapy_DNA_glyco (Formamidopyrimidine-DNA glycosylase N-terminal domain)
|
31 | 26 |
31 |
| FCD (FCD domain)
|
4 | 2 |
0 |
| FDX-ACB (Ferredoxin-fold anticodon binding domain)
|
2 | 2 |
2 |
| FeoA (FeoA domain)
|
9 | 2 |
0 |
| Fe_dep_repress (Iron dependent repressor, N-terminal DNA binding domain)
|
28 | 6 |
28 |
| Fe_dep_repr_C (Iron dependent repressor, metal binding and dimerisation domain)
|
28 | 6 |
0 |
| Flavi_DEAD (Flavivirus DEAD domain)
|
12 | 6 |
12 |
| FLO_LFY (Floricaula / Leafy protein)
|
2 | 2 |
2 |
| Flp_C (Recombinase Flp protein)
|
12 | 3 |
12 |
| Flp_N (Recombinase Flp protein N-terminus)
|
12 | 3 |
12 |
| Flu_NS1 (Influenza non-structural protein (NS1))
|
2 | 1 |
2 |
| FokI_C (Restriction endonuclease FokI, catalytic domain)
|
1 | 1 |
1 |
| FokI_N (Restriction endonuclease FokI, recognition domain)
|
1 | 1 |
1 |
| Fork_head (Fork head domain)
|
19 | 9 |
19 |
| Formyl_trans_C (Formyl transferase, C-terminal domain)
|
2 | 1 |
2 |
| Formyl_trans_N (Formyl transferase)
|
2 | 1 |
2 |
| Ftsk_gamma (Ftsk gamma domain)
|
6 | 1 |
6 |
| GAD (GAD domain)
|
7 | 4 |
1 |
| GAGA (GAGA factor)
|
2 | 2 |
2 |
| Gal4_dimer (Gal4-like dimerisation domain)
|
4 | 2 |
4 |
| GATA (GATA zinc finger)
|
13 | 11 |
13 |
| GatB (PET112 family, C terminal region)
|
2 | 1 |
2 |
| GatB_N (PET112 family, N terminal region)
|
2 | 1 |
2 |
| GatB_Yqey (GatB domain)
|
1 | 1 |
1 |
| GCM (GCM motif protein)
|
1 | 1 |
1 |
| GerE (Bacterial regulatory proteins, luxR family)
|
22 | 6 |
22 |
| GntR (Bacterial regulatory proteins, gntR family)
|
4 | 2 |
4 |
| GTP_EFTU (Elongation factor Tu GTP binding domain)
|
23 | 16 |
12 |
| GTP_EFTU_D2 (Elongation factor Tu domain 2)
|
30 | 16 |
18 |
| GTP_EFTU_D3 (Elongation factor Tu C-terminal domain)
|
14 | 10 |
9 |
| H2TH (Formamidopyrimidine-DNA glycosylase H2TH domain)
|
31 | 26 |
31 |
| Helicase_C (Helicase conserved C-terminal domain)
|
20 | 11 |
14 |
| HGTP_anticodon (Anticodon binding domain)
|
13 | 4 |
11 |
| HHH (Helix-hairpin-helix motif)
|
49 | 26 |
39 |
| HhH-GPD (HhH-GPD superfamily base excision DNA repair protein)
|
63 | 38 |
63 |
| HipA_C (HipA-like C-terminal domain)
|
2 | 2 |
0 |
| HipA_N (HipA-like N-terminal domain)
|
2 | 2 |
0 |
| Histone (Core histone H2A/H2B/H3/H4)
|
280 | 35 |
280 |
| HLH (Helix-loop-helix DNA-binding domain)
|
29 | 9 |
27 |
| HMG_box (HMG (high mobility group) box)
|
14 | 12 |
14 |
| HNF-1_N (Hepatocyte nuclear factor 1 (HNF-1), N terminus)
|
4 | 2 |
4 |
| HNH (HNH endonuclease)
|
5 | 3 |
5 |
| Homeobox (Homeobox domain)
|
63 | 36 |
63 |
| Hom_end (Homing endonuclease)
|
4 | 2 |
3 |
| Hom_end_hint (Hom_end-associated Hint)
|
2 | 2 |
2 |
| Hormone_recep (Ligand-binding domain of nuclear hormone receptor)
|
6 | 3 |
0 |
| HSF_DNA-bind (HSF-type DNA-binding)
|
5 | 3 |
3 |
| HTH_3 (Helix-turn-helix)
|
24 | 12 |
24 |
| HTH_5 (Bacterial regulatory protein, arsR family)
|
1 | 1 |
1 |
| HTH_7 (Helix-turn-helix domain of resolvase)
|
22 | 13 |
22 |
| HTH_AraC (Bacterial regulatory helix-turn-helix proteins, AraC family)
|
14 | 5 |
14 |
| HutP (HutP)
|
9 | 4 |
9 |
| IBD (Transcription-initiator DNA-binding domain IBD)
|
7 | 2 |
5 |
| IF3_C (Translation initiation factor IF-3, C-terminal domain)
|
1 | 1 |
0 |
| ig (Immunoglobulin domain)
|
36 | 15 |
7 |
| IgG_binding_B (B domain)
|
1 | 1 |
0 |
| IMS (impB/mucB/samB family)
|
96 | 72 |
96 |
| Integrase_DNA (DNA binding domain of tn916 integrase)
|
2 | 2 |
2 |
| IPPT (IPP transferase)
|
10 | 5 |
10 |
| IRF (Interferon regulatory factor transcription factor)
|
20 | 6 |
20 |
| KH_1 (KH domain)
|
32 | 13 |
25 |
| KH_2 (KH domain)
|
131 | 98 |
1 |
| KorB (KorB domain)
|
4 | 1 |
4 |
| KOW (KOW motif)
|
129 | 129 |
112 |
| Ku (Ku70/Ku80 beta-barrel domain)
|
2 | 1 |
2 |
| Ku_C (Ku70/Ku80 C-terminal arm)
|
2 | 1 |
1 |
| Ku_N (Ku70/Ku80 N-terminal alpha/beta domain)
|
2 | 1 |
2 |
| L15 (Ribosomal protein L15)
|
185 | 127 |
169 |
| La (La domain)
|
11 | 6 |
11 |
| LacI (Bacterial regulatory proteins, lacI family)
|
50 | 34 |
47 |
| Lactamase_B (Metallo-beta-lactamase superfamily)
|
6 | 2 |
6 |
| LAG1-DNAbind (LAG1, DNA binding)
|
6 | 6 |
6 |
| LAGLIDADG_1 (LAGLIDADG endonuclease)
|
58 | 23 |
58 |
| LAGLIDADG_2 (LAGLIDADG DNA endonuclease family)
|
4 | 3 |
4 |
| LepA_C (GTP-binding protein LepA C-terminus)
|
1 | 1 |
1 |
| Levi_coat (Levivirus coat protein)
|
84 | 28 |
83 |
| LRR_1 (Leucine Rich Repeat)
|
42 | 1 |
12 |
| LRR_3 (Leucine Rich Repeat)
|
10 | 1 |
4 |
| LSM (LSM domain)
|
34 | 3 |
27 |
| LytTR (LytTr DNA-binding domain)
|
1 | 1 |
1 |
| Mago_nashi (Mago nashi protein)
|
7 | 4 |
0 |
| MamL-1 (MamL-1 domain)
|
1 | 1 |
0 |
| MarR (MarR family)
|
6 | 1 |
6 |
| MBD (Methyl-CpG binding domain)
|
2 | 2 |
2 |
| MEF2_binding (MEF2 binding)
|
1 | 1 |
0 |
| MerR (MerR family regulatory protein)
|
10 | 9 |
10 |
| MerR-DNA-bind (MerR, DNA binding)
|
3 | 2 |
3 |
| Metallophos (Calcineurin-like phosphoesterase)
|
3 | 2 |
3 |
| MethyltransfD12 (D12 class N6 adenine-specific DNA methyltransferase)
|
16 | 5 |
14 |
| Methyltransf_11 (Methyltransferase domain)
|
36 | 11 |
1 |
| Methyltransf_1N (6-O-methylguanine DNA methyltransferase, ribonuclease-like domain)
|
10 | 3 |
0 |
| MetJ (Met Apo-repressor, MetJ)
|
22 | 6 |
22 |
| MH1 (MH1 domain)
|
4 | 2 |
4 |
| Microvir_J (Microvirus J protein)
|
3 | 3 |
3 |
| MMR_HSR1 (GTPase of unknown function)
|
8 | 8 |
1 |
| MMtag (Kinase phosphorylation protein)
|
5 | 1 |
0 |
| MobB (Molybdopterin guanine dinucleotide synthesis protein B)
|
42 | 6 |
1 |
| MRP (Mitochondrial RNA binding protein MRP)
|
2 | 1 |
2 |
| MutH (DNA mismatch repair enzyme MutH)
|
3 | 2 |
3 |
| MutS_I (MutS domain I)
|
45 | 18 |
29 |
| MutS_II (MutS domain II)
|
42 | 18 |
0 |
| MutS_III (MutS domain III)
|
36 | 18 |
31 |
| MutS_IV (MutS family domain IV)
|
36 | 18 |
36 |
| MutS_V (MutS domain V)
|
38 | 18 |
0 |
| Mu_DNA_bind (Mu DNA-binding domain)
|
1 | 1 |
1 |
| Myb_DNA-binding (Myb-like DNA-binding domain)
|
20 | 10 |
18 |
| Myc-LZ (Myc leucine zipper domain)
|
2 | 1 |
0 |
| NAD_synthase (NAD synthase)
|
10 | 3 |
0 |
| NaeI (Restriction endonuclease NaeI)
|
2 | 1 |
2 |
| NDT80_PhoG (NDT80 / PhoG like DNA-binding family)
|
11 | 11 |
11 |
| NgoMIV_restric (NgoMIV restriction enzyme)
|
4 | 1 |
4 |
| NID (Nmi/IFP 35 domain (NID))
|
11 | 11 |
0 |
| NikR_C (NikR C terminal nickel binding domain)
|
8 | 1 |
4 |
| Nop (Putative snoRNA binding domain)
|
3 | 1 |
3 |
| Nop10p (Nucleolar RNA-binding protein, Nop10p family)
|
2 | 2 |
1 |
| NOSIC (NOSIC (NUC001) domain)
|
2 | 1 |
0 |
| NTP_transf_2 (Nucleotidyltransferase domain)
|
29 | 22 |
26 |
| NUMOD4 (NUMOD4 motif)
|
1 | 1 |
1 |
| OB_RNB (Ribonuclease B OB domain)
|
1 | 1 |
0 |
| OGG_N (8-oxoguanine DNA glycosylase, N-terminal domain)
|
23 | 23 |
0 |
| Omega_Repress (Omega Transcriptional Repressor)
|
12 | 3 |
12 |
| P53 (P53 DNA-binding domain)
|
29 | 10 |
29 |
| PAP_central (Poly(A) polymerase central domain)
|
1 | 1 |
1 |
| PAP_RNA-bind (Poly(A) polymerase predicted RNA binding domain)
|
1 | 1 |
1 |
| ParB (ParB family)
|
4 | 2 |
3 |
| PARP_regulatory (Poly A polymerase regulatory subunit)
|
1 | 1 |
1 |
| Parvo_coat (Parvovirus coat protein VP2)
|
5 | 5 |
5 |
| Parvo_NS1 (Parvovirus non-structural protein NS1)
|
24 | 1 |
11 |
| PAX ('Paired box' domain)
|
6 | 4 |
6 |
| PAXNEB (PAXNEB protein)
|
36 | 4 |
0 |
| PAZ (PAZ domain)
|
4 | 4 |
4 |
| PC4 (Transcriptional Coactivator p15 (PC4))
|
2 | 1 |
2 |
| PCRF (PCRF domain)
|
9 | 9 |
6 |
| PD-C2-AF1 (POU domain, class 2, associating factor 1)
|
2 | 1 |
2 |
| PemK (PemK-like protein)
|
2 | 1 |
2 |
| Pencillinase_R (Penicillinase repressor)
|
8 | 4 |
8 |
| Peptidase_A21 (Peptidase family A21)
|
8 | 1 |
0 |
| Peptidase_A6 (Peptidase A6 family)
|
29 | 6 |
9 |
| Peptidase_S24 (Peptidase S24-like)
|
2 | 1 |
0 |
| Peripla_BP_1 (Periplasmic binding proteins and sugar binding domain of the LacI family)
|
42 | 28 |
0 |
| Phage_CII (Bacteriophage CII protein)
|
4 | 1 |
4 |
| Phage_coat (Phage PP7 coat protein)
|
12 | 1 |
12 |
| Phage_endo_I (Phage endonuclease I)
|
2 | 1 |
2 |
| Phage_F (Capsid protein (F protein))
|
6 | 3 |
5 |
| Phage_G (Major spike protein (G protein))
|
3 | 3 |
0 |
| Phage_integrase (Phage integrase family)
|
66 | 25 |
66 |
| Phage_integr_N (Phage integrase, N-terminal SAM-like domain)
|
10 | 4 |
10 |
| Phage_integ_N (Bacteriophage lambda integrase, N-terminal domain)
|
6 | 2 |
6 |
| Phe_tRNA-synt_N (Aminoacyl tRNA synthetase class II, N-terminal domain)
|
2 | 2 |
2 |
| Phi-29_GP16_7 (Bacteriophage phi-29 early protein GP16.7)
|
6 | 1 |
4 |
| Phi-29_GP4 (Phi-29-like late genes activator (early protein GP4))
|
2 | 1 |
2 |
| PHP (PHP domain)
|
5 | 4 |
0 |
| PIN (PIN domain)
|
8 | 2 |
0 |
| Piwi (Piwi domain)
|
10 | 5 |
6 |
| Plug_translocon (Plug domain of Sec61p)
|
3 | 3 |
0 |
| PolC_DP2 (DNA polymerase II large subunit DP2)
|
2 | 2 |
0 |
| PolyA_pol (Poly A polymerase head domain)
|
2 | 1 |
1 |
| Pou (Pou domain - N-terminal to homeobox domain)
|
10 | 7 |
10 |
| PPV_E1_C (Papillomavirus helicase)
|
23 | 3 |
22 |
| PPV_E2_C (E2 (early) protein, C terminal)
|
7 | 4 |
7 |
| ProRS-C_1 (Prolyl-tRNA synthetase, C-terminal)
|
4 | 2 |
0 |
| Prox1 (Homeobox prospero-like protein (PROX1))
|
1 | 1 |
1 |
| PseudoU_synth_1 (tRNA pseudouridine synthase)
|
18 | 3 |
13 |
| PseudoU_synth_2 (RNA pseudouridylate synthase)
|
4 | 1 |
4 |
| PTS-HPr (PTS HPr component phosphorylation site)
|
7 | 2 |
0 |
| PUA (PUA domain)
|
7 | 6 |
5 |
| PUF (Pumilio-family RNA binding repeat)
|
111 | 7 |
92 |
| Pur_DNA_glyco (Methylpurine-DNA glycosylase (MPG))
|
4 | 4 |
4 |
| Pyr_excise (Pyrimidine dimer DNA glycosylase)
|
3 | 2 |
3 |
| Rad4 (Rad4 transglutaminase-like domain)
|
2 | 2 |
2 |
| Rad51 (Rad51)
|
36 | 4 |
0 |
| Rap1-DNA-bind (Rap1, DNA-binding)
|
4 | 1 |
4 |
| RdRP_1 (RNA dependent RNA polymerase)
|
36 | 16 |
36 |
| RdRP_3 (Viral RNA dependent RNA polymerase)
|
2 | 1 |
2 |
| RdRP_4 (Viral RNA-directed RNA-polymerase)
|
8 | 7 |
8 |
| RdRP_5 (Reovirus RNA-dependent RNA polymerase lambda 3)
|
4 | 4 |
4 |
| RecA (recA bacterial DNA recombination protein)
|
36 | 4 |
36 |
| Rep_3 (Initiator Replication protein)
|
4 | 3 |
4 |
| Rep_N (Rep protein catalytic domain like)
|
7 | 2 |
7 |
| ResIII (Type III restriction enzyme, res subunit)
|
6 | 4 |
5 |
| Resolvase (Resolvase, N terminal domain)
|
14 | 5 |
12 |
| RE_HindIII (HindIII restriction endonuclease)
|
4 | 1 |
4 |
| RF-1 (RF-1 domain)
|
9 | 9 |
6 |
| RFX_DNA_binding (RFX DNA-binding domain)
|
1 | 1 |
1 |
| Rhabdo_ncap (Rhabdovirus nucleocapsid protein)
|
49 | 2 |
27 |
| RHD (Rel homology domain (RHD))
|
56 | 24 |
56 |
| RHH_1 (Ribbon-helix-helix protein, copG family)
|
20 | 3 |
20 |
| Rho_N (Rho termination factor, N-terminal domain)
|
33 | 7 |
0 |
| Rho_RNA_bind (Rho termination factor, RNA-binding domain)
|
35 | 7 |
32 |
| Ribonuclease (ribonuclease)
|
11 | 6 |
11 |
| Ribonuclease_3 (RNase3 domain)
|
19 | 9 |
8 |
| Ribosomal_L1 (Ribosomal protein L1p/L10e family)
|
52 | 34 |
40 |
| Ribosomal_L10 (Ribosomal protein L10)
|
1 | 1 |
1 |
| Ribosomal_L11 (Ribosomal protein L11, RNA binding domain)
|
122 | 118 |
97 |
| Ribosomal_L11_N (Ribosomal protein L11, N-terminal domain)
|
74 | 74 |
47 |
| Ribosomal_L12 (Ribosomal protein L7/L12 C-terminal domain)
|
11 | 6 |
3 |
| Ribosomal_L13 (Ribosomal protein L13)
|
129 | 129 |
114 |
| Ribosomal_L14 (Ribosomal protein L14p/L23e)
|
128 | 128 |
113 |
| Ribosomal_L15 (Ribosomal protein L15 amino terminal region)
|
62 | 62 |
52 |
| Ribosomal_L15e (Ribosomal L15)
|
58 | 58 |
57 |
| Ribosomal_L16 (Ribosomal protein L16p/L10e)
|
132 | 132 |
115 |
| Ribosomal_L17 (Ribosomal protein L17)
|
69 | 69 |
56 |
| Ribosomal_L18p (Ribosomal L18p/L5e family)
|
127 | 127 |
114 |
| Ribosomal_L19 (Ribosomal protein L19)
|
65 | 65 |
51 |
| Ribosomal_L19e (Ribosomal protein L19e)
|
58 | 58 |
57 |
| Ribosomal_L2 (Ribosomal Proteins L2, RNA binding domain)
|
131 | 131 |
119 |
| Ribosomal_L20 (Ribosomal protein L20)
|
69 | 69 |
56 |
| Ribosomal_L21e (Ribosomal protein L21e)
|
58 | 58 |
57 |
| Ribosomal_L21p (Ribosomal prokaryotic L21 protein)
|
64 | 64 |
54 |
| Ribosomal_L22 (Ribosomal protein L22p/L17e)
|
133 | 133 |
114 |
| Ribosomal_L23 (Ribosomal protein L23)
|
133 | 131 |
115 |
| Ribosomal_L24e (Ribosomal protein L24e)
|
63 | 63 |
61 |
| Ribosomal_L25p (Ribosomal L25p family)
|
57 | 57 |
42 |
| Ribosomal_L27 (Ribosomal L27 protein)
|
70 | 70 |
57 |
| Ribosomal_L28 (Ribosomal L28 family)
|
24 | 24 |
22 |
| Ribosomal_L29 (Ribosomal L29 protein)
|
131 | 131 |
114 |
| Ribosomal_L2_C (Ribosomal Proteins L2, C-terminal domain)
|
131 | 131 |
117 |
| Ribosomal_L3 (Ribosomal protein L3)
|
139 | 132 |
124 |
| Ribosomal_L30 (Ribosomal protein L30p/L7e)
|
126 | 126 |
111 |
| Ribosomal_L31 (Ribosomal protein L31)
|
37 | 37 |
25 |
| Ribosomal_L31e (Ribosomal protein L31e)
|
60 | 60 |
59 |
| Ribosomal_L32e (Ribosomal protein L32)
|
59 | 59 |
57 |
| Ribosomal_L32p (Ribosomal L32p protein family)
|
74 | 74 |
55 |
| Ribosomal_L33 (Ribosomal protein L33)
|
66 | 66 |
50 |
| Ribosomal_L34 (Ribosomal protein L34)
|
65 | 65 |
49 |
| Ribosomal_L35p (Ribosomal protein L35)
|
64 | 64 |
49 |
| Ribosomal_L36 (Ribosomal protein L36)
|
56 | 56 |
44 |
| Ribosomal_L37ae (Ribosomal L37ae protein family)
|
60 | 60 |
58 |
| Ribosomal_L37e (Ribosomal protein L37e)
|
59 | 59 |
57 |
| Ribosomal_L39 (Ribosomal L39 protein)
|
59 | 59 |
57 |
| Ribosomal_L4 (Ribosomal protein L4/L1 family)
|
146 | 134 |
124 |
| Ribosomal_L44 (Ribosomal protein L44)
|
59 | 59 |
57 |
| Ribosomal_L5 (Ribosomal protein L5)
|
131 | 130 |
117 |
| Ribosomal_L5_C (ribosomal L5P family C-terminus)
|
195 | 130 |
179 |
| Ribosomal_L6 (Ribosomal protein L6)
|
260 | 130 |
227 |
| Ribosomal_L7Ae (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family)
|
72 | 67 |
70 |
| Ribosomal_L9_C (Ribosomal protein L9, C-terminal domain)
|
51 | 51 |
1 |
| Ribosomal_L9_N (Ribosomal protein L9, N-terminal domain)
|
64 | 64 |
49 |
| Ribosomal_S10 (Ribosomal protein S10p/S20e)
|
92 | 92 |
80 |
| Ribosomal_S11 (Ribosomal protein S11)
|
93 | 93 |
80 |
| Ribosomal_S12 (Ribosomal protein S12)
|
104 | 104 |
81 |
| Ribosomal_S13 (Ribosomal protein S13/S18)
|
95 | 94 |
82 |
| Ribosomal_S14 (Ribosomal protein S14p/S29e)
|
92 | 92 |
80 |
| Ribosomal_S15 (Ribosomal protein S15)
|
101 | 100 |
87 |
| Ribosomal_S16 (Ribosomal protein S16)
|
91 | 91 |
79 |
| Ribosomal_S17 (Ribosomal protein S17)
|
93 | 93 |
80 |
| Ribosomal_S18 (Ribosomal protein S18)
|
95 | 94 |
80 |
| Ribosomal_S19 (Ribosomal protein S19)
|
93 | 93 |
81 |
| Ribosomal_S2 (Ribosomal protein S2)
|
93 | 93 |
82 |
| Ribosomal_S20p (Ribosomal protein S20)
|
91 | 91 |
79 |
| Ribosomal_S21 (Ribosomal protein S21)
|
25 | 25 |
23 |
| Ribosomal_S30AE (Sigma 54 modulation protein / S30EA ribosomal protein)
|
5 | 5 |
5 |
| Ribosomal_S3_C (Ribosomal protein S3, C-terminal domain)
|
92 | 92 |
80 |
| Ribosomal_S3_N (Ribosomal protein S3, N-terminal domain)
|
91 | 91 |
79 |
| Ribosomal_S4 (Ribosomal protein S4/S9 N-terminal domain)
|
94 | 94 |
81 |
| Ribosomal_S5 (Ribosomal protein S5, N-terminal domain)
|
94 | 94 |
80 |
| Ribosomal_S5_C (Ribosomal protein S5, C-terminal domain)
|
94 | 94 |
81 |
| Ribosomal_S6 (Ribosomal protein S6)
|
95 | 94 |
82 |
| Ribosomal_S7 (Ribosomal protein S7p/S5e)
|
97 | 96 |
82 |
| Ribosomal_S8 (Ribosomal protein S8)
|
99 | 97 |
86 |
| Ribosomal_S9 (Ribosomal protein S9/S16)
|
93 | 93 |
80 |
| RIP (Ribosome inactivating protein)
|
1 | 1 |
1 |
| RMMBL (RNA-metabolising metallo-beta-lactamase)
|
4 | 1 |
2 |
| RnaseA (Pancreatic ribonuclease)
|
11 | 7 |
11 |
| RnaseH (RNase H)
|
28 | 13 |
24 |
| RNaseH_C (T4 RNase H, C terminal)
|
1 | 1 |
1 |
| RNase_E_G (Ribonuclease E/G family)
|
7 | 4 |
7 |
| RNase_PH (3' exoribonuclease family, domain 1)
|
4 | 2 |
4 |
| RNase_PH_C (3' exoribonuclease family, domain 2)
|
4 | 2 |
2 |
| RNA_ligase (RNA ligase)
|
8 | 2 |
4 |
| RNA_pol (DNA-dependent RNA polymerase)
|
18 | 11 |
18 |
| RNA_pol_A_bac (RNA polymerase Rpb3/RpoA insert domain)
|
39 | 28 |
0 |
| RNA_pol_A_CTD (Bacterial RNA polymerase, alpha chain C terminal domain)
|
3 | 2 |
2 |
| RNA_pol_L (RNA polymerase Rpb3/Rpb11 dimerisation domain)
|
64 | 28 |
0 |
| RNA_POL_M_15KD (RNA polymerases M/15 Kd subunit)
|
25 | 24 |
0 |
| RNA_pol_N (RNA polymerases N / 8 kDa subunit)
|
25 | 24 |
0 |
| RNA_pol_Rpb1_1 (RNA polymerase Rpb1, domain 1)
|
39 | 28 |
37 |
| RNA_pol_Rpb1_2 (RNA polymerase Rpb1, domain 2)
|
32 | 28 |
29 |
| RNA_pol_Rpb1_3 (RNA polymerase Rpb1, domain 3)
|
32 | 28 |
0 |
| RNA_pol_Rpb1_4 (RNA polymerase Rpb1, domain 4)
|
32 | 28 |
0 |
| RNA_pol_Rpb1_5 (RNA polymerase Rpb1, domain 5)
|
37 | 28 |
30 |
| RNA_pol_Rpb1_6 (RNA polymerase Rpb1, domain 6)
|
25 | 24 |
0 |
| RNA_pol_Rpb1_7 (RNA polymerase Rpb1, domain 7)
|
25 | 24 |
0 |
| RNA_pol_Rpb2_1 (RNA polymerase beta subunit)
|
53 | 28 |
18 |
| RNA_pol_Rpb2_2 (RNA polymerase Rpb2, domain 2)
|
46 | 28 |
0 |
| RNA_pol_Rpb2_3 (RNA polymerase Rpb2, domain 3)
|
32 | 28 |
23 |
| RNA_pol_Rpb2_4 (RNA polymerase Rpb2, domain 4)
|
25 | 24 |
0 |
| RNA_pol_Rpb2_45 (RNA polymerase beta subunit external 1 domain)
|
7 | 4 |
0 |
| RNA_pol_Rpb2_5 (RNA polymerase Rpb2, domain 5)
|
25 | 24 |
0 |
| RNA_pol_Rpb2_6 (RNA polymerase Rpb2, domain 6)
|
45 | 28 |
42 |
| RNA_pol_Rpb2_7 (RNA polymerase Rpb2, domain 7)
|
32 | 28 |
27 |
| RNA_pol_Rpb4 (RNA polymerase Rpb4)
|
13 | 12 |
0 |
| RNA_pol_Rpb5_C (RNA polymerase Rpb5, C-terminal domain)
|
25 | 24 |
0 |
| RNA_pol_Rpb5_N (RNA polymerase Rpb5, N-terminal domain)
|
25 | 24 |
1 |
| RNA_pol_Rpb6 (RNA polymerase Rpb6)
|
32 | 28 |
0 |
| RNA_pol_Rpb7_N (RNA polymerase Rpb7-like, N-terminal domain)
|
13 | 12 |
0 |
| RNA_pol_Rpb8 (RNA polymerase Rpb8)
|
25 | 24 |
0 |
| RNB (RNB domain)
|
2 | 2 |
2 |
| Rota_NSP3 (Rotavirus non-structural protein NSP3)
|
8 | 1 |
8 |
| Rpr2 (RNAse P Rpr2/Rpp21/SNM1 subunit domain)
|
5 | 1 |
4 |
| RRF (Ribosome recycling factor)
|
14 | 13 |
9 |
| RRM_1 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain))
|
131 | 69 |
109 |
| RTP (Replication terminator protein)
|
9 | 4 |
9 |
| Runt (Runt domain)
|
7 | 4 |
7 |
| RusA (Endodeoxyribonuclease RusA)
|
4 | 1 |
2 |
| RuvA_C (RuvA, C-terminal domain)
|
5 | 2 |
1 |
| RuvA_N (RuvA N terminal domain)
|
5 | 2 |
0 |
| RVT_1 (Reverse transcriptase (RNA-dependent DNA polymerase))
|
50 | 29 |
30 |
| RVT_connect (Reverse transcriptase connection domain)
|
28 | 10 |
22 |
| RVT_thumb (Reverse transcriptase thumb domain)
|
28 | 10 |
14 |
| S1 (S1 RNA binding domain)
|
19 | 17 |
3 |
| S4 (S4 domain)
|
94 | 94 |
80 |
| SAM_2 (SAM domain (Sterile alpha motif))
|
3 | 3 |
3 |
| SAP (SAP domain)
|
2 | 1 |
2 |
| SASP (Small, acid-soluble spore proteins, alpha/beta type)
|
3 | 1 |
3 |
| SBP_bac_1 (Bacterial extracellular solute-binding protein)
|
1 | 1 |
0 |
| SecE (SecE/Sec61-gamma subunits of protein translocation complex)
|
2 | 2 |
0 |
| SecY (eubacterial secY protein)
|
3 | 3 |
3 |
| SelB-wing_2 (Elongation factor SelB, winged helix)
|
4 | 2 |
4 |
| SelB-wing_3 (Elongation factor SelB, winged helix)
|
9 | 4 |
8 |
| SeqA (SeqA protein)
|
5 | 3 |
5 |
| Seryl_tRNA_N (Seryl-tRNA synthetase N-terminal domain)
|
3 | 1 |
1 |
| SH2 (SH2 domain)
|
2 | 2 |
0 |
| Sigma54_DBD (Sigma-54, DNA binding domain)
|
2 | 2 |
2 |
| Sigma70_r1_2 (Sigma-70 factor, region 1.2)
|
1 | 1 |
0 |
| Sigma70_r2 (Sigma-70 region 2)
|
1 | 1 |
0 |
| Sigma70_r3 (Sigma-70 region 3)
|
3 | 1 |
0 |
| Sigma70_r4 (Sigma-70, region 4)
|
6 | 4 |
5 |
| Sigma70_r4_2 (Sigma-70, region 4)
|
16 | 5 |
16 |
| SmpB (SmpB protein)
|
9 | 4 |
6 |
| SNF2_N (SNF2 family N-terminal domain)
|
2 | 1 |
2 |
| Spo0A_C (Sporulation initiation factor Spo0A C terminal)
|
4 | 1 |
4 |
| SpoVT_AbrB (SpoVT / AbrB like domain)
|
4 | 1 |
4 |
| SRF-TF (SRF-type transcription factor (DNA-binding and dimerisation domain))
|
22 | 8 |
22 |
| SRP-alpha_N (Signal recognition particle, alpha subunit, N-terminal)
|
1 | 1 |
1 |
| SRP14 (Signal recognition particle 14kD protein)
|
8 | 3 |
5 |
| SRP19 (SRP19 protein)
|
9 | 8 |
9 |
| SRP54 (SRP54-type protein, GTPase domain)
|
10 | 6 |
2 |
| SRP54_N (SRP54-type protein, helical bundle domain)
|
10 | 6 |
3 |
| SRP9 (Signal recognition particle 9 kDa protein (SRP9))
|
4 | 3 |
3 |
| SRPRB (Signal recognition particle receptor beta subunit)
|
2 | 1 |
0 |
| SRP_SPB (Signal peptide binding domain)
|
45 | 21 |
25 |
| SSB (Single-strand binding protein family)
|
6 | 2 |
5 |
| STAT_alpha (STAT protein, all-alpha domain)
|
2 | 2 |
0 |
| STAT_bind (STAT protein, DNA binding domain)
|
2 | 2 |
2 |
| T-box (T-box)
|
4 | 2 |
4 |
| T4-Gluco-transf (Bacteriophage T4 beta-glucosyltransferase)
|
8 | 4 |
1 |
| TAF (TATA box binding protein associated factor (TAF))
|
68 | 34 |
68 |
| Taq-exonuc (Taq polymerase, exonuclease)
|
7 | 7 |
0 |
| Tat (Transactivating regulatory protein (Tat))
|
2 | 1 |
2 |
| TBP (Transcription factor TFIID (or TATA-binding protein, TBP))
|
86 | 24 |
86 |
| TEBP_beta (Telomere-binding protein beta subunit (TEBP beta))
|
14 | 14 |
14 |
| Telo_bind (Telomere-binding protein alpha subunit, central domain)
|
60 | 19 |
43 |
| Ter (DNA replication terminus site-binding protein (Ter protein))
|
4 | 4 |
4 |
| TetR_C (Tetracyclin repressor, C-terminal all-alpha domain)
|
1 | 1 |
0 |
| TetR_C_5 (QacR-like protein, C-terminal region)
|
4 | 1 |
0 |
| TetR_N (Bacterial regulatory proteins, tetR family)
|
9 | 3 |
9 |
| TFIIA (Transcription factor IIA, alpha/beta subunit)
|
8 | 4 |
4 |
| TFIIA_gamma_C (Transcription initiation factor IIA, gamma subunit, beta-barrel domain)
|
4 | 4 |
0 |
| TFIIA_gamma_N (Transcription initiation factor IIA, gamma subunit, helical domain)
|
4 | 4 |
0 |
| TFIIB (Transcription factor TFIIB repeat)
|
16 | 4 |
15 |
| TFIIB_Zn_Ribbon (TFIIB zinc-binding)
|
10 | 1 |
1 |
| TFIIS_C (Transcription factor S-II (TFIIS))
|
17 | 3 |
11 |
| TFIIS_M (Transcription factor S-II (TFIIS), central domain)
|
1 | 1 |
0 |
| TGS (TGS domain)
|
1 | 1 |
0 |
| TGT (Queuine tRNA-ribosyltransferase)
|
10 | 3 |
6 |
| Thioredoxin (Thioredoxin)
|
19 | 17 |
2 |
| Thrombin_light (Thrombin light chain)
|
4 | 4 |
0 |
| TIG (IPT/TIG domain)
|
60 | 28 |
42 |
| TK (Thymidine kinase)
|
6 | 1 |
0 |
| TMV_coat (Virus coat protein (TMV like))
|
5 | 5 |
5 |
| Tombus_P19 (Tombusvirus P19 core protein)
|
3 | 2 |
3 |
| Topoisom_bac (DNA topoisomerase)
|
12 | 7 |
12 |
| Topoisom_I (Eukaryotic DNA topoisomerase I, catalytic core)
|
18 | 18 |
18 |
| Topoisom_I_N (Eukaryotic DNA topoisomerase I, DNA binding fragment)
|
16 | 16 |
16 |
| Toprim (Toprim domain)
|
14 | 8 |
10 |
| Toprim_N (DNA primase catalytic core, N-terminal domain)
|
2 | 1 |
2 |
| Tower (Tower)
|
1 | 1 |
0 |
| TraI_2 (Putative helicase)
|
20 | 10 |
0 |
| TRAM (TRAM domain)
|
2 | 1 |
2 |
| Transposase_11 (Transposase DDE domain)
|
5 | 5 |
5 |
| Transposase_17 (Transposase IS200 like)
|
12 | 6 |
12 |
| Transposase_Tn5 (Transposase Tn5 dimerisation domain)
|
5 | 5 |
5 |
| Trans_reg_C (Transcriptional regulatory protein, C terminal)
|
5 | 2 |
5 |
| Trigger_N (Bacterial trigger factor protein (TF))
|
3 | 3 |
2 |
| TrmB (Sugar-specific transcriptional regulator TrmB)
|
4 | 2 |
4 |
| tRNA-synt_1 (tRNA synthetases class I (I, L, M and V))
|
57 | 11 |
19 |
| tRNA-synt_1b (tRNA synthetases class I (W and Y))
|
20 | 7 |
16 |
| tRNA-synt_1c (tRNA synthetases class I (E and Q), catalytic domain)
|
29 | 22 |
29 |
| tRNA-synt_1c_C (tRNA synthetases class I (E and Q), anti-codon binding domain)
|
15 | 15 |
14 |
| tRNA-synt_1d (tRNA synthetases class I (R))
|
2 | 2 |
2 |
| tRNA-synt_1e (tRNA synthetases class I (C) catalytic domain)
|
13 | 4 |
1 |
| tRNA-synt_1f (tRNA synthetases class I (K))
|
5 | 3 |
1 |
| tRNA-synt_1g (tRNA synthetases class I (M))
|
46 | 12 |
16 |
| tRNA-synt_2 (tRNA synthetases class II (D, K and N))
|
9 | 5 |
8 |
| tRNA-synt_2b (tRNA synthetase class II core domain (G, H, P, S and T))
|
21 | 7 |
15 |
| tRNA-synt_2d (tRNA synthetases class II core domain (F))
|
18 | 6 |
1 |
| tRNA_anti (OB-fold nucleic acid binding domain)
|
14 | 10 |
11 |
| tRNA_bind (Putative tRNA binding domain)
|
2 | 2 |
0 |
| tRNA_int_endo (tRNA intron endonuclease, catalytic C-terminal domain)
|
12 | 1 |
4 |
| tRNA_int_endo_N (tRNA intron endonuclease, N-terminal domain)
|
4 | 1 |
0 |
| tRNA_Me_trans (tRNA methyl transferase)
|
6 | 3 |
6 |
| tRNA_NucTransf2 (tRNA nucleotidyltransferase, second domain)
|
28 | 21 |
26 |
| tRNA_SAD (Threonyl and Alanyl tRNA synthetase second additional domain)
|
1 | 1 |
1 |
| tRNA_U5-meth_tr (tRNA (Uracil-5-)-methyltransferase)
|
6 | 2 |
4 |
| TROVE (TROVE domain)
|
4 | 2 |
4 |
| TrpBP (Tryptophan RNA-binding attenuator protein)
|
132 | 6 |
66 |
| Trp_repressor (Trp repressor protein)
|
16 | 4 |
16 |
| TruB-C_2 (Pseudouridine synthase II TruB, C-terminal)
|
2 | 2 |
0 |
| TruB_N (TruB family pseudouridylate synthase (N terminal domain))
|
9 | 7 |
9 |
| TrwC (TrwC relaxase)
|
9 | 7 |
9 |
| Trypsin (Trypsin)
|
4 | 4 |
4 |
| Tymo_coat (Tymovirus coat protein)
|
6 | 2 |
4 |
| Tyr-DNA_phospho (Tyrosyl-DNA phosphodiesterase)
|
16 | 8 |
16 |
| T_Ag_DNA_bind (Origin of replication binding protein)
|
5 | 3 |
5 |
| UDG (Uracil DNA glycosylase superfamily)
|
24 | 19 |
24 |
| UPF0547 (Uncharacterised protein family UPF0547)
|
16 | 2 |
15 |
| UVR (UvrB/uvrC motif)
|
4 | 2 |
0 |
| UvrD-helicase (UvrD/REP helicase)
|
15 | 8 |
15 |
| V-set (Immunoglobulin V-set domain)
|
37 | 15 |
20 |
| Val_tRNA-synt_C (Valyl tRNA synthetase tRNA binding arm)
|
4 | 2 |
4 |
| Viral_helicase1 (Viral (Superfamily 1) RNA helicase)
|
4 | 1 |
0 |
| VirDNA-topo-I_N (Viral DNA topoisomerase I, N-terminal)
|
2 | 2 |
0 |
| VP40 (Matrix protein VP40)
|
3 | 2 |
3 |
| Vsr (DNA mismatch endonuclease Vsr)
|
2 | 2 |
2 |
| WD40 (WD domain, G-beta repeat)
|
22 | 4 |
9 |
| XPA_N (XPA protein N-terminal)
|
10 | 1 |
5 |
| XPC-binding (XPC-binding domain)
|
2 | 2 |
0 |
| XPG_I (XPG I-region)
|
3 | 2 |
1 |
| XPG_N (XPG N-terminal domain)
|
3 | 2 |
3 |
| YDG_SRA (YDG/SRA domain)
|
16 | 10 |
16 |
| z-alpha (Adenosine deaminase z-alpha domain)
|
20 | 7 |
20 |
| zf-C2H2 (Zinc finger, C2H2 type)
|
136 | 28 |
126 |
| zf-C2HC (Zinc finger, C2HC type)
|
1 | 1 |
1 |
| zf-C3HC4 (Zinc finger, C3HC4 type (RING finger))
|
5 | 1 |
4 |
| zf-C4 (Zinc finger, C4 type (two domains))
|
52 | 26 |
52 |
| zf-CCCH (Zinc finger C-x8-C-x5-C-x3-H type (and similar))
|
10 | 2 |
4 |
| zf-CCHC (Zinc knuckle)
|
20 | 14 |
20 |
| zf-FPG_IleRS (Zinc finger found in FPG and IleRS)
|
23 | 22 |
23 |
| Zn_clus (Fungal Zn(2)-Cys(6) binuclear cluster domain)
|
28 | 12 |
28 |
is a link to Pfam entry's homepage