Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3f27.std.txt Дата изменения: Sun Oct 7 12:56:38 2012 Дата индексирования: Sun Feb 3 22:57:23 2013 Кодировка:

REM -------------------------------------------------------------------- 3F27
REM 3F27
REM STRIDE: Knowledge-based secondary structure assignment 3F27
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3F27
REM 3F27
REM Residue accessible surface area calculation 3F27
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3F27
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3F27
REM 3F27
REM ------------------------ General information ----------------------- 3F27
REM 3F27
HDR TRANSCRIPTION/DNA 29-OCT-08 3F27 3F27
CMP MOL_ID: 1; 3F27
CMP MOLECULE: DNA (5'- 3F27
CMP D(*DGP*DTP*DCP*DTP*DCP*DTP*DAP*DTP*DTP*DGP*DTP*DCP*DCP*DTP*D 3F27
CMP 3'); 3F27
CMP CHAIN: A; 3F27
CMP ENGINEERED: YES; 3F27
CMP OTHER_DETAILS: LAMA1; 3F27
CMP MOL_ID: 2; 3F27
CMP MOLECULE: DNA (5'- 3F27
CMP D(*DCP*DCP*DAP*DGP*DGP*DAP*DCP*DAP*DAP*DTP*DAP*DGP*DAP*DGP*D 3F27
CMP 3'); 3F27
CMP CHAIN: B; 3F27
CMP ENGINEERED: YES; 3F27
CMP OTHER_DETAILS: LAMA1; 3F27
CMP MOL_ID: 3; 3F27
CMP MOLECULE: TRANSCRIPTION FACTOR SOX-17; 3F27
CMP CHAIN: D; 3F27
CMP FRAGMENT: HMG BOX, RESIDUES 66-144; 3F27
CMP ENGINEERED: YES 3F27
SRC MOL_ID: 1; 3F27
SRC SYNTHETIC: YES; 3F27
SRC MOL_ID: 2; 3F27
SRC SYNTHETIC: YES; 3F27
SRC MOL_ID: 3; 3F27
SRC ORGANISM_SCIENTIFIC: MUS MUSCULUS; 3F27
SRC ORGANISM_COMMON: MOUSE; 3F27
SRC ORGANISM_TAXID: 10090; 3F27
SRC GENE: SOX-17, SOX17; 3F27
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3F27
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3F27
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 3F27
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3F27
SRC EXPRESSION_SYSTEM_PLASMID: PETG20A 3F27
AUT P.PALASINGAM,R.JAUCH,C.K.L.NG,P.R.KOLATKAR 3F27
REM 3F27
REM -------------------- Secondary structure summary ------------------- 3F27
REM 3F27
CHN /data/npidb/pdb/pdb_new/all/pdb3f27.pdb D 3F27
REM 3F27
REM . . . . . 3F27
SEQ 1 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPF 50 3F27
STR HHHHHHHHHHHHHHHHTTTT HHHHHHHHHHHHHH HHHHHHH 3F27
REM 3F27
REM . . 3F27
SEQ 51 VEEAERLRVQHMQDHPNYKYRPRR 74 3F27
STR HHHHHHHHHHHHHHTTTT 3F27
REM 3F27
REM 3F27
REM 3F27
LOC AlphaHelix ALA 74 D GLN 89 D 3F27
LOC AlphaHelix ASN 95 D ALA 108 D 3F27
LOC AlphaHelix LEU 111 D ASP 131 D 3F27
LOC TurnIV ASN 90 D LEU 93 D 3F27
LOC TurnI HIS 132 D TYR 135 D 3F27
REM 3F27
REM --------------- Detailed secondary structure assignment------------- 3F27
REM 3F27
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3F27
ASG ILE D 68 1 C Coil 360.00 125.36 132.2 3F27
ASG ARG D 69 2 C Coil -96.43 134.49 222.2 3F27
ASG ARG D 70 3 C Coil -41.13 152.43 154.4 3F27
ASG PRO D 71 4 C Coil -82.18 152.57 43.4 3F27
ASG MET D 72 5 C Coil -76.65 135.91 69.9 3F27
ASG ASN D 73 6 C Coil -83.46 175.06 90.2 3F27
ASG ALA D 74 7 H AlphaHelix -42.79 -46.08 20.6 3F27
ASG PHE D 75 8 H AlphaHelix -68.09 -59.09 54.7 3F27
ASG MET D 76 9 H AlphaHelix -45.96 -42.69 85.0 3F27
ASG VAL D 77 10 H AlphaHelix -62.30 -42.52 4.2 3F27
ASG TRP D 78 11 H AlphaHelix -73.16 -49.61 17.4 3F27
ASG ALA D 79 12 H AlphaHelix -53.69 -50.08 2.2 3F27
ASG LYS D 80 13 H AlphaHelix -35.44 -54.86 132.1 3F27
ASG ASP D 81 14 H AlphaHelix -81.63 -63.55 89.1 3F27
ASG GLU D 82 15 H AlphaHelix -35.73 -38.55 32.9 3F27
ASG ARG D 83 16 H AlphaHelix -65.12 -41.57 65.7 3F27
ASG LYS D 84 17 H AlphaHelix -60.68 -38.42 141.9 3F27
ASG ARG D 85 18 H AlphaHelix -67.79 -58.96 111.6 3F27
ASG LEU D 86 19 H AlphaHelix -53.63 -36.70 19.0 3F27
ASG ALA D 87 20 H AlphaHelix -67.75 -22.71 38.1 3F27
ASG GLN D 88 21 H AlphaHelix -84.08 -45.41 119.7 3F27
ASG GLN D 89 22 H AlphaHelix -70.16 -25.92 131.3 3F27
ASG ASN D 90 23 T Turn -134.87 72.68 41.3 3F27
ASG PRO D 91 24 T Turn -60.47 -20.04 105.6 3F27
ASG ASP D 92 25 T Turn -64.95 -53.03 119.0 3F27
ASG LEU D 93 26 T Turn -64.81 138.48 59.5 3F27
ASG HIS D 94 27 C Coil -70.48 168.90 141.5 3F27
ASG ASN D 95 28 H AlphaHelix -71.77 -45.00 81.9 3F27
ASG ALA D 96 29 H AlphaHelix -43.85 -46.88 57.4 3F27
ASG GLU D 97 30 H AlphaHelix -66.81 -47.80 85.3 3F27
ASG LEU D 98 31 H AlphaHelix -43.13 -47.76 6.4 3F27
ASG SER D 99 32 H AlphaHelix -62.76 -40.62 53.2 3F27
ASG LYS D 100 33 H AlphaHelix -61.73 -40.94 137.4 3F27
ASG MET D 101 34 H AlphaHelix -70.08 -42.57 51.2 3F27
ASG LEU D 102 35 H AlphaHelix -60.32 -40.19 0.0 3F27
ASG GLY D 103 36 H AlphaHelix -62.14 -49.69 34.2 3F27
ASG LYS D 104 37 H AlphaHelix -58.44 -44.86 154.1 3F27
ASG SER D 105 38 H AlphaHelix -87.70 -10.67 45.6 3F27
ASG TRP D 106 39 H AlphaHelix -67.81 -51.18 48.7 3F27
ASG LYS D 107 40 H AlphaHelix -57.28 -32.67 180.9 3F27
ASG ALA D 108 41 H AlphaHelix -77.50 -24.06 76.2 3F27
ASG LEU D 109 42 C Coil -66.80 128.59 41.7 3F27
ASG THR D 110 43 C Coil -67.46 155.63 82.4 3F27
ASG LEU D 111 44 H AlphaHelix -56.53 -43.18 142.1 3F27
ASG ALA D 112 45 H AlphaHelix -57.24 -41.96 56.7 3F27
ASG GLU D 113 46 H AlphaHelix -63.01 -46.91 106.2 3F27
ASG LYS D 114 47 H AlphaHelix -64.26 -28.41 35.1 3F27
ASG ARG D 115 48 H AlphaHelix -40.03 -52.59 128.0 3F27
ASG PRO D 116 49 H AlphaHelix -63.32 -17.91 56.1 3F27
ASG PHE D 117 50 H AlphaHelix -83.61 -45.20 54.5 3F27
ASG VAL D 118 51 H AlphaHelix -52.78 -42.67 75.6 3F27
ASG GLU D 119 52 H AlphaHelix -65.82 -41.00 98.7 3F27
ASG GLU D 120 53 H AlphaHelix -64.64 -46.36 66.3 3F27
ASG ALA D 121 54 H AlphaHelix -54.42 -27.94 13.8 3F27
ASG GLU D 122 55 H AlphaHelix -79.25 -45.86 87.2 3F27
ASG ARG D 123 56 H AlphaHelix -49.15 -48.83 140.5 3F27
ASG LEU D 124 57 H AlphaHelix -56.48 -49.02 54.4 3F27
ASG ARG D 125 58 H AlphaHelix -64.37 -40.40 92.3 3F27
ASG VAL D 126 59 H AlphaHelix -62.34 -50.99 66.8 3F27
ASG GLN D 127 60 H AlphaHelix -58.57 -46.34 97.6 3F27
ASG HIS D 128 61 H AlphaHelix -48.37 -51.28 26.1 3F27
ASG MET D 129 62 H AlphaHelix -49.31 -44.46 109.6 3F27
ASG GLN D 130 63 H AlphaHelix -65.49 -52.84 142.1 3F27
ASG ASP D 131 64 H AlphaHelix -59.16 -35.56 96.2 3F27
ASG HIS D 132 65 T Turn -138.57 95.96 77.1 3F27
ASG PRO D 133 66 T Turn -69.79 -45.30 108.9 3F27
ASG ASN D 134 67 T Turn -83.06 10.93 159.4 3F27
ASG TYR D 135 68 T Turn -71.51 114.12 53.4 3F27
ASG LYS D 136 69 C Coil -104.30 131.79 151.6 3F27
ASG TYR D 137 70 C Coil -66.32 112.85 117.6 3F27
ASG ARG D 138 71 C Coil -117.30 99.02 191.2 3F27
ASG PRO D 139 72 C Coil -80.18 -168.04 77.0 3F27
ASG ARG D 140 73 C Coil -141.06 -172.92 211.1 3F27
ASG ARG D 141 74 C Coil -166.11 360.00 297.2 3F27