Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3gxq.std.txt Дата изменения: Thu Jan 20 22:40:19 2011 Дата индексирования: Fri Feb 11 18:02:33 2011 Кодировка:

REM -------------------------------------------------------------------- 3GXQ
REM 3GXQ
REM STRIDE: Knowledge-based secondary structure assignment 3GXQ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3GXQ
REM 3GXQ
REM Residue accessible surface area calculation 3GXQ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3GXQ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3GXQ
REM 3GXQ
REM ------------------------ General information ----------------------- 3GXQ
REM 3GXQ
HDR DNA BINDING PROTEIN/DNA 02-APR-09 3GXQ 3GXQ
CMP MOL_ID: 1; 3GXQ
CMP MOLECULE: PUTATIVE REGULATOR OF TRANSFER GENES ARTA; 3GXQ
CMP CHAIN: A, B; 3GXQ
CMP ENGINEERED: YES; 3GXQ
CMP MOL_ID: 2; 3GXQ
CMP MOLECULE: DNA (5'-D(*AP*CP*AP*TP*GP*AP*CP*AP*TP*G)-3'); 3GXQ
CMP CHAIN: C; 3GXQ
CMP ENGINEERED: YES; 3GXQ
CMP MOL_ID: 3; 3GXQ
CMP MOLECULE: DNA (5'-D(*AP*CP*AP*TP*GP*TP*CP*AP*TP*GP*T)-3'); 3GXQ
CMP CHAIN: D; 3GXQ
CMP ENGINEERED: YES 3GXQ
SRC MOL_ID: 1; 3GXQ
SRC ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS 3GXQ
SRC USA300; 3GXQ
SRC ORGANISM_TAXID: 367830; 3GXQ
SRC GENE: ARTA, SAUSA300_PUSA030009; 3GXQ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3GXQ
SRC EXPRESSION_SYSTEM_TAXID: 562; 3GXQ
SRC EXPRESSION_SYSTEM_STRAIN: BL21 DE3; 3GXQ
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3GXQ
SRC EXPRESSION_SYSTEM_PLASMID: PET15B; 3GXQ
SRC MOL_ID: 2; 3GXQ
SRC SYNTHETIC: YES; 3GXQ
SRC MOL_ID: 3; 3GXQ
SRC SYNTHETIC: YES 3GXQ
AUT L.NI,N.FIRTH,M.A.SCHUMACHER 3GXQ
REM 3GXQ
REM -------------------- Secondary structure summary ------------------- 3GXQ
REM 3GXQ
CHN /data/npidb/pdb/pdb_new/all/pdb3gxq.pdb A 3GXQ
REM 3GXQ
REM . . . . . 3GXQ
SEQ 1 NSVFFGKKKKVSLHLLVDPDMKDEIIKYAQEKDFDNVSQAGREILKKGLE 50 3GXQ
STR TTTT EEEEEEE HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH 3GXQ
REM 3GXQ
REM 3GXQ
SEQ 51 QIA 53 3GXQ
STR H 3GXQ
REM 3GXQ
CHN /data/npidb/pdb/pdb_new/all/pdb3gxq.pdb B 3GXQ
REM 3GXQ
REM . . . . . 3GXQ
SEQ 1 ENSVFFGKKKKVSLHLLVDPDMKDEIIKYAQEKDFDNVSQAGREILKKGL 50 3GXQ
STR HHHHH EEEEEEE HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH 3GXQ
REM 3GXQ
REM 3GXQ
SEQ 51 EQIA 54 3GXQ
STR HHH 3GXQ
REM 3GXQ
REM 3GXQ
REM 3GXQ
LOC AlphaHelix PRO 25 A ASP 39 A 3GXQ
LOC AlphaHelix VAL 43 A GLN 57 A 3GXQ
LOC AlphaHelix ASN 7 B PHE 11 B 3GXQ
LOC AlphaHelix PRO 25 B ASP 39 B 3GXQ
LOC AlphaHelix VAL 43 B ILE 58 B 3GXQ
LOC Strand VAL 17 A VAL 23 A 3GXQ
LOC Strand VAL 17 B VAL 23 B 3GXQ
LOC TurnII PHE 10 A LYS 13 A 3GXQ
LOC TurnI' ASP 39 A ASN 42 A 3GXQ
LOC TurnI' ASP 39 B ASN 42 B 3GXQ
REM 3GXQ
REM --------------- Detailed secondary structure assignment------------- 3GXQ
REM 3GXQ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3GXQ
ASG ASN A 7 1 C Coil 360.00 -174.21 128.5 3GXQ
ASG SER A 8 2 C Coil 67.18 -169.68 77.8 3GXQ
ASG VAL A 9 3 C Coil -72.27 133.15 146.3 3GXQ
ASG PHE A 10 4 T Turn -173.92 148.55 110.5 3GXQ
ASG PHE A 11 5 T Turn -60.96 132.00 216.3 3GXQ
ASG GLY A 12 6 T Turn 83.38 -6.64 73.8 3GXQ
ASG LYS A 13 7 T Turn -56.06 134.23 58.0 3GXQ
ASG LYS A 14 8 C Coil -71.49 139.56 112.1 3GXQ
ASG LYS A 15 9 C Coil -70.14 158.85 155.2 3GXQ
ASG LYS A 16 10 C Coil -82.63 159.20 46.7 3GXQ
ASG VAL A 17 11 E Strand -114.61 145.86 40.4 3GXQ
ASG SER A 18 12 E Strand -62.28 125.83 53.3 3GXQ
ASG LEU A 19 13 E Strand -119.59 120.40 4.6 3GXQ
ASG HIS A 20 14 E Strand -133.26 117.00 106.8 3GXQ
ASG LEU A 21 15 E Strand -152.07 158.11 4.7 3GXQ
ASG LEU A 22 16 E Strand -89.49 135.40 84.2 3GXQ
ASG VAL A 23 17 E Strand -135.57 163.98 0.0 3GXQ
ASG ASP A 24 18 C Coil -66.79 153.84 70.0 3GXQ
ASG PRO A 25 19 H AlphaHelix -57.13 -50.81 41.9 3GXQ
ASG ASP A 26 20 H AlphaHelix -52.89 -44.59 91.4 3GXQ
ASG MET A 27 21 H AlphaHelix -62.78 -47.55 16.5 3GXQ
ASG LYS A 28 22 H AlphaHelix -62.97 -30.51 62.9 3GXQ
ASG ASP A 29 23 H AlphaHelix -70.95 -38.68 73.8 3GXQ
ASG GLU A 30 24 H AlphaHelix -63.51 -41.07 65.5 3GXQ
ASG ILE A 31 25 H AlphaHelix -66.16 -36.41 0.0 3GXQ
ASG ILE A 32 26 H AlphaHelix -71.45 -43.10 47.7 3GXQ
ASG LYS A 33 27 H AlphaHelix -60.04 -46.36 116.3 3GXQ
ASG TYR A 34 28 H AlphaHelix -57.84 -38.20 14.2 3GXQ
ASG ALA A 35 29 H AlphaHelix -69.59 -35.62 0.0 3GXQ
ASG GLN A 36 30 H AlphaHelix -70.23 -36.94 124.1 3GXQ
ASG GLU A 37 31 H AlphaHelix -84.72 -28.44 122.8 3GXQ
ASG LYS A 38 32 H AlphaHelix -119.07 -22.03 122.7 3GXQ
ASG ASP A 39 33 H AlphaHelix -122.47 24.16 13.5 3GXQ
ASG PHE A 40 34 T Turn 58.92 39.17 201.1 3GXQ
ASG ASP A 41 35 T Turn 63.93 13.62 90.0 3GXQ
ASG ASN A 42 36 T Turn -83.92 99.62 74.1 3GXQ
ASG VAL A 43 37 H AlphaHelix -62.54 -40.39 41.3 3GXQ
ASG SER A 44 38 H AlphaHelix -65.73 -33.37 26.4 3GXQ
ASG GLN A 45 39 H AlphaHelix -67.14 -41.51 57.3 3GXQ
ASG ALA A 46 40 H AlphaHelix -65.15 -35.68 0.0 3GXQ
ASG GLY A 47 41 H AlphaHelix -65.72 -37.61 0.6 3GXQ
ASG ARG A 48 42 H AlphaHelix -68.15 -46.59 25.1 3GXQ
ASG GLU A 49 43 H AlphaHelix -57.53 -45.60 53.4 3GXQ
ASG ILE A 50 44 H AlphaHelix -67.04 -41.42 0.0 3GXQ
ASG LEU A 51 45 H AlphaHelix -61.48 -43.19 1.4 3GXQ
ASG LYS A 52 46 H AlphaHelix -60.30 -40.75 131.1 3GXQ
ASG LYS A 53 47 H AlphaHelix -67.70 -33.66 66.9 3GXQ
ASG GLY A 54 48 H AlphaHelix -72.16 -36.13 0.0 3GXQ
ASG LEU A 55 49 H AlphaHelix -67.42 -39.88 19.6 3GXQ
ASG GLU A 56 50 H AlphaHelix -69.38 -16.91 121.0 3GXQ
ASG GLN A 57 51 H AlphaHelix -81.22 -14.42 84.7 3GXQ
ASG ILE A 58 52 C Coil -86.38 -45.55 60.3 3GXQ
ASG ALA A 59 53 C Coil 154.33 360.00 139.0 3GXQ
ASG GLU B 6 1 C Coil 360.00 -177.77 172.5 3GXQ
ASG ASN B 7 2 H AlphaHelix -51.09 -61.93 119.5 3GXQ
ASG SER B 8 3 H AlphaHelix -50.91 -34.44 50.0 3GXQ
ASG VAL B 9 4 H AlphaHelix -54.79 -48.16 76.8 3GXQ
ASG PHE B 10 5 H AlphaHelix -58.61 -26.93 165.8 3GXQ
ASG PHE B 11 6 H AlphaHelix -95.71 11.72 181.3 3GXQ
ASG GLY B 12 7 C Coil 97.85 -2.90 55.3 3GXQ
ASG LYS B 13 8 C Coil -66.93 118.83 143.7 3GXQ
ASG LYS B 14 9 C Coil -96.64 129.46 98.3 3GXQ
ASG LYS B 15 10 C Coil -68.93 130.17 173.7 3GXQ
ASG LYS B 16 11 C Coil -74.75 145.87 92.0 3GXQ
ASG VAL B 17 12 E Strand -111.67 148.76 45.3 3GXQ
ASG SER B 18 13 E Strand -70.69 131.35 48.8 3GXQ
ASG LEU B 19 14 E Strand -122.27 115.91 6.0 3GXQ
ASG HIS B 20 15 E Strand -123.98 116.18 114.8 3GXQ
ASG LEU B 21 16 E Strand -146.36 157.98 7.2 3GXQ
ASG LEU B 22 17 E Strand -89.80 138.28 85.9 3GXQ
ASG VAL B 23 18 E Strand -131.64 153.90 0.0 3GXQ
ASG ASP B 24 19 C Coil -64.49 140.33 35.7 3GXQ
ASG PRO B 25 20 H AlphaHelix -52.01 -33.06 27.5 3GXQ
ASG ASP B 26 21 H AlphaHelix -66.98 -39.49 89.0 3GXQ
ASG MET B 27 22 H AlphaHelix -70.91 -36.52 14.6 3GXQ
ASG LYS B 28 23 H AlphaHelix -65.99 -42.52 56.3 3GXQ
ASG ASP B 29 24 H AlphaHelix -57.30 -32.23 103.4 3GXQ
ASG GLU B 30 25 H AlphaHelix -77.38 -32.47 102.8 3GXQ
ASG ILE B 31 26 H AlphaHelix -72.29 -37.08 0.0 3GXQ
ASG ILE B 32 27 H AlphaHelix -67.35 -42.49 43.7 3GXQ
ASG LYS B 33 28 H AlphaHelix -61.59 -37.46 117.1 3GXQ
ASG TYR B 34 29 H AlphaHelix -68.19 -38.36 23.6 3GXQ
ASG ALA B 35 30 H AlphaHelix -64.56 -38.99 0.0 3GXQ
ASG GLN B 36 31 H AlphaHelix -64.50 -47.80 107.3 3GXQ
ASG GLU B 37 32 H AlphaHelix -70.50 -32.54 117.1 3GXQ
ASG LYS B 38 33 H AlphaHelix -116.33 -34.44 132.9 3GXQ
ASG ASP B 39 34 H AlphaHelix -118.63 32.65 8.8 3GXQ
ASG PHE B 40 35 T Turn 51.14 43.02 203.5 3GXQ
ASG ASP B 41 36 T Turn 65.37 14.48 89.4 3GXQ
ASG ASN B 42 37 T Turn -81.52 91.64 69.7 3GXQ
ASG VAL B 43 38 H AlphaHelix -55.02 -42.78 38.6 3GXQ
ASG SER B 44 39 H AlphaHelix -57.83 -44.17 32.7 3GXQ
ASG GLN B 45 40 H AlphaHelix -67.82 -35.93 77.0 3GXQ
ASG ALA B 46 41 H AlphaHelix -67.39 -42.42 0.0 3GXQ
ASG GLY B 47 42 H AlphaHelix -59.99 -37.36 0.6 3GXQ
ASG ARG B 48 43 H AlphaHelix -66.51 -48.80 56.9 3GXQ
ASG GLU B 49 44 H AlphaHelix -61.05 -42.76 61.7 3GXQ
ASG ILE B 50 45 H AlphaHelix -66.26 -47.63 0.0 3GXQ
ASG LEU B 51 46 H AlphaHelix -59.45 -39.38 2.0 3GXQ
ASG LYS B 52 47 H AlphaHelix -64.32 -39.75 87.6 3GXQ
ASG LYS B 53 48 H AlphaHelix -66.11 -39.76 54.1 3GXQ
ASG GLY B 54 49 H AlphaHelix -64.53 -39.62 0.0 3GXQ
ASG LEU B 55 50 H AlphaHelix -68.13 -34.07 5.9 3GXQ
ASG GLU B 56 51 H AlphaHelix -64.22 -30.37 106.1 3GXQ
ASG GLN B 57 52 H AlphaHelix -62.15 -76.21 78.3 3GXQ
ASG ILE B 58 53 H AlphaHelix -21.49 -89.16 64.6 3GXQ
ASG ALA B 59 54 C Coil -50.26 360.00 127.8 3GXQ