Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3jrh.std.txt Дата изменения: Mon Oct 8 06:02:18 2012 Дата индексирования: Sun Feb 3 23:09:02 2013 Кодировка:

REM -------------------------------------------------------------------- 3JRH
REM 3JRH
REM STRIDE: Knowledge-based secondary structure assignment 3JRH
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3JRH
REM 3JRH
REM Residue accessible surface area calculation 3JRH
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3JRH
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3JRH
REM 3JRH
REM ------------------------ General information ----------------------- 3JRH
REM 3JRH
HDR DNA BINDING PROTEIN/DNA 08-SEP-09 3JRH 3JRH
CMP MOL_ID: 1; 3JRH
CMP MOLECULE: DNA-BINDING PROTEIN FIS; 3JRH
CMP CHAIN: A, B; 3JRH
CMP ENGINEERED: YES; 3JRH
CMP MOL_ID: 2; 3JRH
CMP MOLECULE: DNA (27-MER); 3JRH
CMP CHAIN: C; 3JRH
CMP ENGINEERED: YES; 3JRH
CMP MOL_ID: 3; 3JRH
CMP MOLECULE: DNA (27-MER); 3JRH
CMP CHAIN: D; 3JRH
CMP ENGINEERED: YES 3JRH
SRC MOL_ID: 1; 3JRH
SRC ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; 3JRH
SRC ORGANISM_TAXID: 83333; 3JRH
SRC STRAIN: K-12; 3JRH
SRC GENE: FIS, B3261, JW3229; 3JRH
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3JRH
SRC EXPRESSION_SYSTEM_TAXID: 469008; 3JRH
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 3JRH
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3JRH
SRC EXPRESSION_SYSTEM_PLASMID: PET11A; 3JRH
SRC MOL_ID: 2; 3JRH
SRC SYNTHETIC: YES; 3JRH
SRC MOL_ID: 3; 3JRH
SRC SYNTHETIC: YES 3JRH
AUT S.STELLA,D.CASCIO,R.C.JOHNSON 3JRH
REM 3JRH
REM -------------------- Secondary structure summary ------------------- 3JRH
REM 3JRH
CHN /data/npidb/pdb/pdb_new/all/pdb3jrh.pdb A 3JRH
REM 3JRH
REM . . . . . 3JRH
SEQ 1 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAE 50 3JRH
STR TTTEEEEETTTT EEEEEHHHHHHHHHHHHHHHTTTT TTTHHHHHHHH 3JRH
REM 3JRH
REM . . . . 3JRH
SEQ 51 VEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 91 3JRH
STR HHHHHHHHHHHHHTTTHHHHHHHH HHHHHHHHHHH 3JRH
REM 3JRH
CHN /data/npidb/pdb/pdb_new/all/pdb3jrh.pdb B 3JRH
REM 3JRH
REM . . . . . 3JRH
SEQ 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL 50 3JRH
STR GGGTTEEEEEETTTEEEEEEHHHHHHHHHHHHHHHHTTT TTTH 3JRH
REM 3JRH
REM . . . . 3JRH
SEQ 51 YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98 3JRH
STR HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH HHHHHHHHHHH 3JRH
REM 3JRH
REM 3JRH
REM 3JRH
LOC AlphaHelix LEU 27 A GLN 41 A 3JRH
LOC AlphaHelix LEU 50 A THR 70 A 3JRH
LOC AlphaHelix GLN 74 A MET 81 A 3JRH
LOC AlphaHelix ARG 85 A TYR 95 A 3JRH
LOC AlphaHelix LEU 27 B LEU 42 B 3JRH
LOC AlphaHelix LEU 50 B THR 70 B 3JRH
LOC AlphaHelix GLN 74 B MET 81 B 3JRH
LOC AlphaHelix ARG 85 B TYR 95 B 3JRH
LOC 310Helix ASN 7 B ASP 9 B 3JRH
LOC Strand THR 12 A VAL 16 A 3JRH
LOC Strand VAL 22 A PRO 26 A 3JRH
LOC Strand THR 12 B ASN 17 B 3JRH
LOC Strand GLN 21 B PRO 26 B 3JRH
LOC TurnVIII ASP 9 A THR 12 A 3JRH
LOC TurnI ASN 17 A ASP 20 A 3JRH
LOC TurnIV LEU 42 A GLN 45 A 3JRH
LOC TurnIV VAL 47 A LEU 50 A 3JRH
LOC TurnI' THR 70 A ASN 73 A 3JRH
LOC TurnVIII ASP 9 B THR 12 B 3JRH
LOC TurnIV ASN 17 B ASP 20 B 3JRH
LOC TurnIV LEU 42 B GLN 45 B 3JRH
LOC TurnIV VAL 47 B LEU 50 B 3JRH
LOC TurnI' THR 70 B ASN 73 B 3JRH
REM 3JRH
REM --------------- Detailed secondary structure assignment------------- 3JRH
REM 3JRH
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3JRH
ASG SER A 8 1 C Coil 360.00 -17.13 177.3 3JRH
ASG ASP A 9 2 T Turn -102.31 110.85 79.3 3JRH
ASG VAL A 10 3 T Turn -72.53 -28.04 73.2 3JRH
ASG LEU A 11 4 T Turn -111.63 95.82 4.6 3JRH
ASG THR A 12 5 E Strand -138.54 158.73 12.4 3JRH
ASG VAL A 13 6 E Strand -119.73 166.14 5.4 3JRH
ASG SER A 14 7 E Strand -95.66 132.72 53.4 3JRH
ASG THR A 15 8 E Strand -117.02 153.34 36.2 3JRH
ASG VAL A 16 9 E Strand -119.89 130.98 76.2 3JRH
ASG ASN A 17 10 T Turn -93.76 -178.81 59.1 3JRH
ASG SER A 18 11 T Turn -63.36 -30.60 119.1 3JRH
ASG GLN A 19 12 T Turn -82.32 15.00 143.7 3JRH
ASG ASP A 20 13 T Turn 64.04 13.57 123.9 3JRH
ASG GLN A 21 14 C Coil -84.59 127.09 101.3 3JRH
ASG VAL A 22 15 E Strand -91.61 146.11 96.1 3JRH
ASG THR A 23 16 E Strand -161.37 139.35 69.3 3JRH
ASG GLN A 24 17 E Strand -73.11 162.88 83.7 3JRH
ASG LYS A 25 18 E Strand -153.40 139.44 50.7 3JRH
ASG PRO A 26 19 E Strand -67.65 147.14 24.8 3JRH
ASG LEU A 27 20 H AlphaHelix -58.47 -38.01 1.6 3JRH
ASG ARG A 28 21 H AlphaHelix -48.89 -41.24 59.1 3JRH
ASG ASP A 29 22 H AlphaHelix -53.41 -46.56 77.0 3JRH
ASG SER A 30 23 H AlphaHelix -56.87 -40.03 1.0 3JRH
ASG VAL A 31 24 H AlphaHelix -70.96 -37.64 0.6 3JRH
ASG LYS A 32 25 H AlphaHelix -59.77 -44.02 57.1 3JRH
ASG GLN A 33 26 H AlphaHelix -62.79 -51.68 55.2 3JRH
ASG ALA A 34 27 H AlphaHelix -38.83 -63.29 0.2 3JRH
ASG LEU A 35 28 H AlphaHelix -64.01 -40.88 0.6 3JRH
ASG LYS A 36 29 H AlphaHelix -47.50 -50.42 108.7 3JRH
ASG ASN A 37 30 H AlphaHelix -65.55 -47.46 52.8 3JRH
ASG TYR A 38 31 H AlphaHelix -47.77 -53.97 38.7 3JRH
ASG PHE A 39 32 H AlphaHelix -63.73 -35.08 20.7 3JRH
ASG ALA A 40 33 H AlphaHelix -59.40 -51.64 68.1 3JRH
ASG GLN A 41 34 H AlphaHelix -65.01 -48.08 89.4 3JRH
ASG LEU A 42 35 T Turn -46.22 125.58 27.1 3JRH
ASG ASN A 43 36 T Turn -109.03 76.29 133.5 3JRH
ASG GLY A 44 37 T Turn 63.37 18.32 62.7 3JRH
ASG GLN A 45 38 T Turn -74.39 138.05 127.0 3JRH
ASG ASP A 46 39 C Coil -70.20 143.82 154.7 3JRH
ASG VAL A 47 40 T Turn -95.20 144.77 12.1 3JRH
ASG ASN A 48 41 T Turn -125.46 -38.73 101.3 3JRH
ASG ASP A 49 42 T Turn -138.36 66.90 89.7 3JRH
ASG LEU A 50 43 H AlphaHelix -70.81 -31.13 0.2 3JRH
ASG TYR A 51 44 H AlphaHelix -67.07 -56.76 30.3 3JRH
ASG GLU A 52 45 H AlphaHelix -54.99 -31.26 79.3 3JRH
ASG LEU A 53 46 H AlphaHelix -65.30 -54.65 33.7 3JRH
ASG VAL A 54 47 H AlphaHelix -67.86 -46.99 1.6 3JRH
ASG LEU A 55 48 H AlphaHelix -44.89 -51.71 26.6 3JRH
ASG ALA A 56 49 H AlphaHelix -58.00 -35.16 20.8 3JRH
ASG GLU A 57 50 H AlphaHelix -76.27 -17.98 3.0 3JRH
ASG VAL A 58 51 H AlphaHelix -100.61 -43.02 6.0 3JRH
ASG GLU A 59 52 H AlphaHelix -61.91 -38.35 4.6 3JRH
ASG GLN A 60 53 H AlphaHelix -53.36 -62.04 41.5 3JRH
ASG PRO A 61 54 H AlphaHelix -64.15 -27.84 6.5 3JRH
ASG LEU A 62 55 H AlphaHelix -63.39 -55.31 1.8 3JRH
ASG LEU A 63 56 H AlphaHelix -59.76 -49.27 1.2 3JRH
ASG ASP A 64 57 H AlphaHelix -52.79 -46.09 55.8 3JRH
ASG MET A 65 58 H AlphaHelix -78.14 -35.44 19.3 3JRH
ASG VAL A 66 59 H AlphaHelix -70.93 -32.81 0.0 3JRH
ASG MET A 67 60 H AlphaHelix -62.10 -42.87 36.3 3JRH
ASG GLN A 68 61 H AlphaHelix -51.27 -55.73 122.2 3JRH
ASG TYR A 69 62 H AlphaHelix -64.86 -49.87 94.6 3JRH
ASG THR A 70 63 H AlphaHelix -77.78 15.71 7.5 3JRH
ASG ARG A 71 64 T Turn 36.04 61.84 227.2 3JRH
ASG GLY A 72 65 T Turn 69.68 -1.91 49.0 3JRH
ASG ASN A 73 66 T Turn -77.16 100.96 70.7 3JRH
ASG GLN A 74 67 H AlphaHelix -62.57 -40.21 58.4 3JRH
ASG THR A 75 68 H AlphaHelix -59.73 -50.24 75.0 3JRH
ASG ARG A 76 69 H AlphaHelix -56.60 -52.44 128.3 3JRH
ASG ALA A 77 70 H AlphaHelix -53.23 -43.57 0.0 3JRH
ASG ALA A 78 71 H AlphaHelix -65.18 -27.59 3.2 3JRH
ASG LEU A 79 72 H AlphaHelix -82.04 -41.47 116.8 3JRH
ASG MET A 80 73 H AlphaHelix -54.75 -40.71 14.0 3JRH
ASG MET A 81 74 H AlphaHelix -84.88 -23.56 2.7 3JRH
ASG GLY A 82 75 C Coil 80.15 30.25 51.5 3JRH
ASG ILE A 83 76 C Coil -120.44 155.04 30.7 3JRH
ASG ASN A 84 77 C Coil -54.55 139.73 117.5 3JRH
ASG ARG A 85 78 H AlphaHelix -50.57 -36.77 134.8 3JRH
ASG GLY A 86 79 H AlphaHelix -62.59 -46.18 34.9 3JRH
ASG THR A 87 80 H AlphaHelix -53.49 -46.77 55.8 3JRH
ASG LEU A 88 81 H AlphaHelix -55.73 -37.94 0.0 3JRH
ASG ARG A 89 82 H AlphaHelix -69.16 -49.96 129.5 3JRH
ASG LYS A 90 83 H AlphaHelix -44.84 -56.02 141.3 3JRH
ASG LYS A 91 84 H AlphaHelix -58.92 -48.74 33.1 3JRH
ASG LEU A 92 85 H AlphaHelix -54.36 -40.20 8.8 3JRH
ASG LYS A 93 86 H AlphaHelix -66.49 -43.45 111.6 3JRH
ASG LYS A 94 87 H AlphaHelix -51.42 -35.89 115.5 3JRH
ASG TYR A 95 88 H AlphaHelix -109.63 16.75 41.4 3JRH
ASG GLY A 96 89 C Coil 48.06 40.36 47.4 3JRH
ASG MET A 97 90 C Coil -90.80 -2.85 71.3 3JRH
ASG ASN A 98 91 C Coil -69.40 360.00 141.5 3JRH
ASG MET B 1 1 C Coil 360.00 -177.42 211.8 3JRH
ASG PHE B 2 2 C Coil -93.66 139.09 182.4 3JRH
ASG GLU B 3 3 C Coil -80.97 147.78 188.0 3JRH
ASG GLN B 4 4 C Coil -66.99 136.49 175.1 3JRH
ASG ARG B 5 5 C Coil -118.86 108.90 150.5 3JRH
ASG VAL B 6 6 C Coil -73.27 160.43 58.6 3JRH
ASG ASN B 7 7 G 310Helix -57.95 -39.22 112.5 3JRH
ASG SER B 8 8 G 310Helix -57.70 -14.44 29.7 3JRH
ASG ASP B 9 9 G 310Helix -106.59 1.50 60.8 3JRH
ASG VAL B 10 10 T Turn -65.12 -39.12 28.2 3JRH
ASG LEU B 11 11 T Turn -117.26 113.40 0.8 3JRH
ASG THR B 12 12 E Strand -136.98 169.75 6.4 3JRH
ASG VAL B 13 13 E Strand -132.03 143.00 6.2 3JRH
ASG SER B 14 14 E Strand -66.80 129.95 57.8 3JRH
ASG THR B 15 15 E Strand -122.64 168.19 32.4 3JRH
ASG VAL B 16 16 E Strand -119.33 131.34 80.6 3JRH
ASG ASN B 17 17 E Strand -96.56 175.25 62.4 3JRH
ASG SER B 18 18 T Turn -53.31 1.25 120.5 3JRH
ASG GLN B 19 19 T Turn -124.70 30.25 120.2 3JRH
ASG ASP B 20 20 T Turn 52.07 37.29 138.4 3JRH
ASG GLN B 21 21 E Strand -117.62 119.93 120.7 3JRH
ASG VAL B 22 22 E Strand -76.16 116.24 104.6 3JRH
ASG THR B 23 23 E Strand -121.69 -171.54 59.1 3JRH
ASG GLN B 24 24 E Strand -140.99 92.46 78.3 3JRH
ASG LYS B 25 25 E Strand -91.26 153.66 50.8 3JRH
ASG PRO B 26 26 E Strand -53.52 153.48 20.0 3JRH
ASG LEU B 27 27 H AlphaHelix -67.18 -34.64 0.6 3JRH
ASG ARG B 28 28 H AlphaHelix -44.57 -43.60 54.9 3JRH
ASG ASP B 29 29 H AlphaHelix -63.96 -38.65 66.9 3JRH
ASG SER B 30 30 H AlphaHelix -58.31 -48.07 1.2 3JRH
ASG VAL B 31 31 H AlphaHelix -58.42 -44.38 1.2 3JRH
ASG LYS B 32 32 H AlphaHelix -55.28 -49.43 85.2 3JRH
ASG GLN B 33 33 H AlphaHelix -60.09 -43.67 56.0 3JRH
ASG ALA B 34 34 H AlphaHelix -53.00 -47.62 0.2 3JRH
ASG LEU B 35 35 H AlphaHelix -76.33 -41.34 0.6 3JRH
ASG LYS B 36 36 H AlphaHelix -47.96 -50.91 143.6 3JRH
ASG ASN B 37 37 H AlphaHelix -70.96 -41.98 41.5 3JRH
ASG TYR B 38 38 H AlphaHelix -51.77 -44.33 27.8 3JRH
ASG PHE B 39 39 H AlphaHelix -67.66 -50.33 20.8 3JRH
ASG ALA B 40 40 H AlphaHelix -50.68 -54.06 68.6 3JRH
ASG GLN B 41 41 H AlphaHelix -64.30 -26.04 148.5 3JRH
ASG LEU B 42 42 H AlphaHelix -59.27 -48.07 18.0 3JRH
ASG ASN B 43 43 T Turn 42.23 79.90 135.0 3JRH
ASG GLY B 44 44 T Turn 88.15 -29.25 75.8 3JRH
ASG GLN B 45 45 T Turn -65.28 139.31 136.4 3JRH
ASG ASP B 46 46 C Coil -82.09 139.21 145.6 3JRH
ASG VAL B 47 47 T Turn -113.39 145.01 18.2 3JRH
ASG ASN B 48 48 T Turn -130.64 -9.47 106.0 3JRH
ASG ASP B 49 49 T Turn -133.41 36.77 77.0 3JRH
ASG LEU B 50 50 H AlphaHelix -74.91 -32.38 0.0 3JRH
ASG TYR B 51 51 H AlphaHelix -68.37 -55.04 35.4 3JRH
ASG GLU B 52 52 H AlphaHelix -59.10 -39.75 83.9 3JRH
ASG LEU B 53 53 H AlphaHelix -54.62 -44.75 44.4 3JRH
ASG VAL B 54 54 H AlphaHelix -72.78 -56.19 3.0 3JRH
ASG LEU B 55 55 H AlphaHelix -51.88 -39.73 22.3 3JRH
ASG ALA B 56 56 H AlphaHelix -66.93 -40.21 24.4 3JRH
ASG GLU B 57 57 H AlphaHelix -64.08 -20.56 17.2 3JRH
ASG VAL B 58 58 H AlphaHelix -104.77 -47.06 8.4 3JRH
ASG GLU B 59 59 H AlphaHelix -53.44 -39.59 3.0 3JRH
ASG GLN B 60 60 H AlphaHelix -53.00 -62.59 73.1 3JRH
ASG PRO B 61 61 H AlphaHelix -62.91 -32.75 6.9 3JRH
ASG LEU B 62 62 H AlphaHelix -61.38 -48.23 2.0 3JRH
ASG LEU B 63 63 H AlphaHelix -67.46 -42.42 1.8 3JRH
ASG ASP B 64 64 H AlphaHelix -54.53 -57.31 48.9 3JRH
ASG MET B 65 65 H AlphaHelix -61.29 -51.78 12.4 3JRH
ASG VAL B 66 66 H AlphaHelix -56.57 -36.80 1.2 3JRH
ASG MET B 67 67 H AlphaHelix -65.13 -41.61 31.1 3JRH
ASG GLN B 68 68 H AlphaHelix -54.90 -52.82 112.3 3JRH
ASG TYR B 69 69 H AlphaHelix -54.43 -48.46 70.5 3JRH
ASG THR B 70 70 H AlphaHelix -82.27 21.11 1.2 3JRH
ASG ARG B 71 71 T Turn 35.19 44.37 203.4 3JRH
ASG GLY B 72 72 T Turn 84.35 0.43 46.8 3JRH
ASG ASN B 73 73 T Turn -80.03 110.63 70.1 3JRH
ASG GLN B 74 74 H AlphaHelix -69.81 -33.86 45.5 3JRH
ASG THR B 75 75 H AlphaHelix -66.93 -39.89 75.0 3JRH
ASG ARG B 76 76 H AlphaHelix -75.33 -41.51 87.1 3JRH
ASG ALA B 77 77 H AlphaHelix -57.14 -46.20 0.0 3JRH
ASG ALA B 78 78 H AlphaHelix -67.41 -33.05 3.4 3JRH
ASG LEU B 79 79 H AlphaHelix -72.34 -38.80 113.4 3JRH
ASG MET B 80 80 H AlphaHelix -82.26 -22.11 13.1 3JRH
ASG MET B 81 81 H AlphaHelix -81.71 -14.54 3.1 3JRH
ASG GLY B 82 82 C Coil 71.98 32.04 44.0 3JRH
ASG ILE B 83 83 C Coil -119.75 148.81 27.4 3JRH
ASG ASN B 84 84 C Coil -50.89 142.98 124.0 3JRH
ASG ARG B 85 85 H AlphaHelix -61.55 -21.21 132.7 3JRH
ASG GLY B 86 86 H AlphaHelix -76.41 -36.11 36.7 3JRH
ASG THR B 87 87 H AlphaHelix -67.74 -41.74 52.9 3JRH
ASG LEU B 88 88 H AlphaHelix -60.09 -52.30 1.2 3JRH
ASG ARG B 89 89 H AlphaHelix -50.69 -44.67 134.0 3JRH
ASG LYS B 90 90 H AlphaHelix -62.76 -47.51 153.5 3JRH
ASG LYS B 91 91 H AlphaHelix -58.81 -44.93 38.7 3JRH
ASG LEU B 92 92 H AlphaHelix -57.68 -48.14 0.6 3JRH
ASG LYS B 93 93 H AlphaHelix -52.56 -51.42 168.2 3JRH
ASG LYS B 94 94 H AlphaHelix -43.26 -38.50 101.5 3JRH
ASG TYR B 95 95 H AlphaHelix -112.15 22.44 32.3 3JRH
ASG GLY B 96 96 C Coil 49.27 41.31 66.9 3JRH
ASG MET B 97 97 C Coil -107.51 73.30 49.4 3JRH
ASG ASN B 98 98 C Coil 177.50 360.00 157.6 3JRH