Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3ucu.std.txt Дата изменения: Thu Oct 18 12:32:57 2012 Дата индексирования: Mon Feb 4 00:10:29 2013 Кодировка:

REM -------------------------------------------------------------------- 3UCU
REM 3UCU
REM STRIDE: Knowledge-based secondary structure assignment 3UCU
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3UCU
REM 3UCU
REM Residue accessible surface area calculation 3UCU
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3UCU
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3UCU
REM 3UCU
REM ------------------------ General information ----------------------- 3UCU
REM 3UCU
HDR SIGNALING PROTEIN/RNA 27-OCT-11 3UCU 3UCU
CMP MOL_ID: 1; 3UCU
CMP MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; 3UCU
CMP CHAIN: P; 3UCU
CMP FRAGMENT: RNA BINDING DOMAIN, UNP RESIDUES 1-98; 3UCU
CMP SYNONYM: U1 SNRNP A, U1-A, U1A; 3UCU
CMP ENGINEERED: YES; 3UCU
CMP MUTATION: YES; 3UCU
CMP MOL_ID: 2; 3UCU
CMP MOLECULE: RNA (92-MER); 3UCU
CMP CHAIN: R; 3UCU
CMP ENGINEERED: YES; 3UCU
CMP OTHER_DETAILS: C-DI-GMP-I RIBOSWITCH; 3UCU
CMP MOL_ID: 3; 3UCU
CMP MOLECULE: DIGUANOSINE MONOPHOSPHATE; 3UCU
CMP CHAIN: A; 3UCU
CMP ENGINEERED: YES 3UCU
SRC MOL_ID: 1; 3UCU
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3UCU
SRC ORGANISM_COMMON: HUMAN; 3UCU
SRC ORGANISM_TAXID: 9606; 3UCU
SRC GENE: SNRPA; 3UCU
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3UCU
SRC EXPRESSION_SYSTEM_TAXID: 511693; 3UCU
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 3UCU
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3UCU
SRC EXPRESSION_SYSTEM_PLASMID: PET11; 3UCU
SRC MOL_ID: 2; 3UCU
SRC SYNTHETIC: YES; 3UCU
SRC OTHER_DETAILS: IN VITRO TRANSCRIBED RNA TRANSCRIPT; 3UCU
SRC MOL_ID: 3; 3UCU
SRC SYNTHETIC: YES 3UCU
AUT K.D.SMITH,S.A.STROBEL 3UCU
REM 3UCU
REM -------------------- Secondary structure summary ------------------- 3UCU
REM 3UCU
CHN /data/npidb/pdb/pdb_new/all/pdb3ucu.pdb P 3UCU
REM 3UCU
REM . . . . . 3UCU
SEQ 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAF 50 3UCU
STR EEEEE TTTT HHHHHHHHHHHHGGG EEEEEE TTTTTTTEE 3UCU
REM 3UCU
REM . . . 3UCU
SEQ 51 VIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 87 3UCU
STR EEETTHHHHHHHHHHHTTEEETTEEEEEEETTTT 3UCU
REM 3UCU
REM 3UCU
REM 3UCU
LOC AlphaHelix LYS 23 P PHE 34 P 3UCU
LOC AlphaHelix VAL 62 P MET 72 P 3UCU
LOC 310Helix SER 35 P PHE 37 P 3UCU
LOC Strand THR 11 P ASN 15 P 3UCU
LOC Strand ILE 40 P VAL 45 P 3UCU
LOC Strand ALA 55 P PHE 59 P 3UCU
LOC Strand PHE 75 P PHE 77 P 3UCU
LOC Strand LYS 80 P TYR 86 P 3UCU
LOC TurnI ASN 18 P ILE 21 P 3UCU
LOC TurnI SER 48 P MET 51 P 3UCU
LOC TurnI LEU 49 P ARG 52 P 3UCU
LOC TurnII MET 51 P GLN 54 P 3UCU
LOC TurnVIII PHE 59 P VAL 62 P 3UCU
LOC TurnII MET 72 P PHE 75 P 3UCU
LOC TurnIV PRO 76 P ASP 79 P 3UCU
LOC TurnI' PHE 77 P LYS 80 P 3UCU
LOC TurnVIII ALA 87 P ASP 90 P 3UCU
REM 3UCU
REM --------------- Detailed secondary structure assignment------------- 3UCU
REM 3UCU
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3UCU
ASG ARG P 7 1 C Coil 360.00 -46.71 241.7 3UCU
ASG PRO P 8 2 C Coil -68.10 160.02 80.0 3UCU
ASG ASN P 9 3 C Coil -153.37 156.27 18.9 3UCU
ASG HIS P 10 4 C Coil -61.17 -30.29 62.1 3UCU
ASG THR P 11 5 E Strand -101.72 142.99 4.4 3UCU
ASG ILE P 12 6 E Strand -116.26 137.19 0.0 3UCU
ASG TYR P 13 7 E Strand -97.78 103.30 43.1 3UCU
ASG ILE P 14 8 E Strand -88.59 134.66 0.0 3UCU
ASG ASN P 15 9 E Strand -126.03 164.45 57.3 3UCU
ASG ASN P 16 10 C Coil 60.58 53.53 55.1 3UCU
ASG LEU P 17 11 C Coil -102.30 149.95 2.5 3UCU
ASG ASN P 18 12 T Turn -58.50 115.92 48.6 3UCU
ASG GLU P 19 13 T Turn -79.80 -8.64 106.5 3UCU
ASG LYS P 20 14 T Turn -81.35 -15.59 182.8 3UCU
ASG ILE P 21 15 T Turn -69.14 133.55 21.0 3UCU
ASG LYS P 22 16 C Coil -66.02 136.12 141.4 3UCU
ASG LYS P 23 17 H AlphaHelix -39.52 -40.92 93.1 3UCU
ASG ASP P 24 18 H AlphaHelix -65.37 -50.22 116.9 3UCU
ASG GLU P 25 19 H AlphaHelix -67.44 -39.28 95.6 3UCU
ASG LEU P 26 20 H AlphaHelix -56.12 -56.60 8.2 3UCU
ASG LYS P 27 21 H AlphaHelix -55.37 -53.30 59.9 3UCU
ASG LYS P 28 22 H AlphaHelix -48.57 -54.55 141.0 3UCU
ASG SER P 29 23 H AlphaHelix -62.27 -46.51 19.6 3UCU
ASG LEU P 30 24 H AlphaHelix -59.01 -37.97 0.0 3UCU
ASG HIS P 31 25 H AlphaHelix -67.18 -40.39 92.4 3UCU
ASG ALA P 32 26 H AlphaHelix -69.65 -12.46 71.0 3UCU
ASG ILE P 33 27 H AlphaHelix -111.80 -32.49 52.6 3UCU
ASG PHE P 34 28 H AlphaHelix -99.15 -13.73 0.0 3UCU
ASG SER P 35 29 G 310Helix -66.00 -17.84 58.6 3UCU
ASG ARG P 36 30 G 310Helix -74.62 -2.96 176.2 3UCU
ASG PHE P 37 31 G 310Helix -101.79 -26.27 29.8 3UCU
ASG GLY P 38 32 C Coil 170.87 166.89 13.3 3UCU
ASG GLN P 39 33 C Coil -67.52 136.14 107.0 3UCU
ASG ILE P 40 34 E Strand -106.54 128.86 26.6 3UCU
ASG LEU P 41 35 E Strand -66.55 -65.77 66.6 3UCU
ASG ASP P 42 36 E Strand -155.39 158.24 89.7 3UCU
ASG ILE P 43 37 E Strand -112.20 118.60 7.8 3UCU
ASG LEU P 44 38 E Strand -91.43 114.21 81.5 3UCU
ASG VAL P 45 39 E Strand -134.88 129.73 7.2 3UCU
ASG SER P 46 40 C Coil -139.81 147.07 44.4 3UCU
ASG ARG P 47 41 C Coil -111.95 27.50 104.4 3UCU
ASG SER P 48 42 T Turn -78.42 159.82 53.5 3UCU
ASG LEU P 49 43 T Turn -48.94 -35.61 153.5 3UCU
ASG LYS P 50 44 T Turn -82.09 -18.22 183.7 3UCU
ASG MET P 51 45 T Turn -115.90 -7.33 53.3 3UCU
ASG ARG P 52 46 T Turn -59.75 142.27 120.9 3UCU
ASG GLY P 53 47 T Turn 69.47 19.97 12.0 3UCU
ASG GLN P 54 48 T Turn -130.52 156.20 33.8 3UCU
ASG ALA P 55 49 E Strand -151.94 138.71 0.2 3UCU
ASG PHE P 56 50 E Strand -112.93 114.69 55.1 3UCU
ASG VAL P 57 51 E Strand -106.87 112.21 0.0 3UCU
ASG ILE P 58 52 E Strand -96.26 123.30 10.8 3UCU
ASG PHE P 59 53 E Strand -100.64 158.63 0.6 3UCU
ASG LYS P 60 54 T Turn -62.54 -44.92 122.6 3UCU
ASG GLU P 61 55 T Turn -118.61 136.74 102.9 3UCU
ASG VAL P 62 56 H AlphaHelix -61.18 -36.38 43.3 3UCU
ASG SER P 63 57 H AlphaHelix -59.15 -41.05 65.8 3UCU
ASG SER P 64 58 H AlphaHelix -69.27 -30.91 6.7 3UCU
ASG ALA P 65 59 H AlphaHelix -69.79 -36.26 0.0 3UCU
ASG THR P 66 60 H AlphaHelix -65.15 -43.12 22.6 3UCU
ASG ASN P 67 61 H AlphaHelix -66.54 -46.71 87.7 3UCU
ASG ALA P 68 62 H AlphaHelix -55.89 -40.37 0.0 3UCU
ASG LEU P 69 63 H AlphaHelix -67.36 -55.35 26.7 3UCU
ASG ARG P 70 64 H AlphaHelix -66.45 -32.80 191.4 3UCU
ASG SER P 71 65 H AlphaHelix -82.17 -24.01 74.9 3UCU
ASG MET P 72 66 H AlphaHelix -131.49 23.91 16.7 3UCU
ASG GLN P 73 67 T Turn -75.18 128.65 92.0 3UCU
ASG GLY P 74 68 T Turn 95.69 -23.27 28.5 3UCU
ASG PHE P 75 69 E Strand -43.67 121.70 97.0 3UCU
ASG PRO P 76 70 E Strand -66.19 127.61 91.2 3UCU
ASG PHE P 77 71 E Strand -141.60 111.18 18.8 3UCU
ASG TYR P 78 72 T Turn 55.34 53.41 87.5 3UCU
ASG ASP P 79 73 T Turn 58.57 20.58 163.2 3UCU
ASG LYS P 80 74 E Strand -137.97 132.80 56.2 3UCU
ASG PRO P 81 75 E Strand -72.12 127.67 43.1 3UCU
ASG MET P 82 76 E Strand -68.20 148.08 0.4 3UCU
ASG ARG P 83 77 E Strand -125.20 92.17 120.7 3UCU
ASG ILE P 84 78 E Strand -91.04 132.01 3.4 3UCU
ASG GLN P 85 79 E Strand -146.06 163.52 107.3 3UCU
ASG TYR P 86 80 E Strand -67.75 153.00 37.3 3UCU
ASG ALA P 87 81 T Turn -70.74 145.54 7.4 3UCU
ASG LYS P 88 82 T Turn -72.98 -55.23 207.3 3UCU
ASG THR P 89 83 T Turn -129.65 148.45 124.1 3UCU
ASG ASP P 90 84 T Turn -133.04 113.34 53.3 3UCU
ASG SER P 91 85 C Coil -89.41 174.12 108.3 3UCU
ASG ASP P 92 86 C Coil 74.40 -158.21 122.8 3UCU
ASG ILE P 93 87 C Coil -102.41 360.00 150.7 3UCU