Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3vdy.std.txt Дата изменения: Mon Oct 29 16:17:04 2012 Дата индексирования: Mon Feb 4 00:16:10 2013 Кодировка:

REM -------------------------------------------------------------------- 3VDY
REM 3VDY
REM STRIDE: Knowledge-based secondary structure assignment 3VDY
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3VDY
REM 3VDY
REM Residue accessible surface area calculation 3VDY
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3VDY
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3VDY
REM 3VDY
REM ------------------------ General information ----------------------- 3VDY
REM 3VDY
HDR DNA BINDING PROTEIN/DNA 06-JAN-12 3VDY 3VDY
CMP MOL_ID: 1; 3VDY
CMP MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN SSBB; 3VDY
CMP CHAIN: A, B; 3VDY
CMP SYNONYM: SSB; 3VDY
CMP ENGINEERED: YES; 3VDY
CMP MOL_ID: 2; 3VDY
CMP MOLECULE: 5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T 3VDY
CMP P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'; 3VDY
CMP CHAIN: C, D, E, F, G; 3VDY
CMP ENGINEERED: YES 3VDY
SRC MOL_ID: 1; 3VDY
SRC ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; 3VDY
SRC ORGANISM_TAXID: 1423; 3VDY
SRC GENE: SSBB, YWPH, BSU36310; 3VDY
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3VDY
SRC EXPRESSION_SYSTEM_TAXID: 562; 3VDY
SRC MOL_ID: 2; 3VDY
SRC SYNTHETIC: YES; 3VDY
SRC ORGANISM_SCIENTIFIC: SYNTHETIC DNA; 3VDY
SRC ORGANISM_TAXID: 32630 3VDY
AUT T.YADAV,B.CARRASCO,A.R.MYERS,N.P.GEORGE,J.L.KECK,J.C.ALONSO 3VDY
REM 3VDY
REM -------------------- Secondary structure summary ------------------- 3VDY
REM 3VDY
CHN /data/npidb/pdb/pdb_new/all/pdb3vdy.pdb A 3VDY
REM 3VDY
REM . . . . . 3VDY
SEQ 1 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYV 50 3VDY
STR EEEEEEETTT EEEEETTTEEEEEEEEEEE TTTT EEEE 3VDY
REM 3VDY
REM . . . . . 3VDY
SEQ 51 NCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYEVNVYVTEVLADTVRFM 100 3VDY
STR EEEEEHHHHHHHHHH TTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEE 3VDY
REM 3VDY
REM 3VDY
SEQ 101 D 101 3VDY
STR 3VDY
REM 3VDY
CHN /data/npidb/pdb/pdb_new/all/pdb3vdy.pdb B 3VDY
REM 3VDY
REM . . . . . 3VDY
SEQ 1 MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVN 50 3VDY
STR EEEEEEE EEEETTTT EEEEEEEEEE BTTTB EEEEE 3VDY
REM 3VDY
REM . . . . 3VDY
SEQ 51 CTLWRKTAENTALYCQKGSLVGVSGRIQTRNVYVTEVLADTVRFMDP 97 3VDY
STR EEEEHHHHHHHHHH TTTEEEEEEEEEEEETTTEEEEEEEEEEE 3VDY
REM 3VDY
REM 3VDY
REM 3VDY
LOC AlphaHelix ARG 55 A TYR 64 A 3VDY
LOC AlphaHelix ARG 55 B TYR 64 B 3VDY
LOC Strand VAL 5 A LEU 11 A 3VDY
LOC Strand ASP 16 A THR 20 A 3VDY
LOC Strand ALA 24 A ASN 34 A 3VDY
LOC Strand ALA 46 A TRP 54 A 3VDY
LOC Strand SER 69 A TYR 82 A 3VDY
LOC Strand VAL 90 A PHE 102 A 3VDY
LOC Strand VAL 5 B LEU 11 B 3VDY
LOC Strand ASP 16 B TYR 19 B 3VDY
LOC Strand ALA 25 B ASN 34 B 3VDY
LOC Strand ALA 46 B TRP 54 B 3VDY
LOC Strand SER 69 B ARG 80 B 3VDY
LOC Strand VAL 92 B PHE 102 B 3VDY
LOC TurnVIII LEU 11 A ASP 14 A 3VDY
LOC TurnI THR 20 A GLY 23 A 3VDY
LOC TurnI ASN 39 A GLY 42 A 3VDY
LOC TurnII GLN 66 A SER 69 A 3VDY
LOC TurnIV TYR 82 A ASN 89 A 3VDY
LOC TurnIV GLU 83 A VAL 90 A 3VDY
LOC TurnVIII ALA 97 A VAL 100 A 3VDY
LOC TurnI THR 20 B GLY 23 B 3VDY
LOC TurnI ASN 39 B GLY 42 B 3VDY
LOC TurnII GLN 66 B SER 69 B 3VDY
LOC TurnIV ARG 80 B TYR 91 B 3VDY
LOC TurnIV ALA 97 B VAL 100 B 3VDY
REM 3VDY
REM --------------- Detailed secondary structure assignment------------- 3VDY
REM 3VDY
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3VDY
ASG HIS A 0 1 C Coil 360.00 -13.03 222.7 3VDY
ASG MET A 1 2 C Coil -138.30 155.69 158.4 3VDY
ASG PHE A 2 3 C Coil -161.92 142.69 182.2 3VDY
ASG ASN A 3 4 C Coil -155.78 103.37 62.5 3VDY
ASG GLN A 4 5 C Coil -142.86 156.50 101.9 3VDY
ASG VAL A 5 6 E Strand -146.86 143.79 26.8 3VDY
ASG MET A 6 7 E Strand -129.50 142.72 79.8 3VDY
ASG LEU A 7 8 E Strand -148.94 141.77 29.1 3VDY
ASG VAL A 8 9 E Strand -127.67 117.92 38.1 3VDY
ASG GLY A 9 10 E Strand -155.78 174.75 3.1 3VDY
ASG ARG A 10 11 E Strand -104.02 139.81 118.4 3VDY
ASG LEU A 11 12 E Strand -62.10 131.86 6.0 3VDY
ASG THR A 12 13 T Turn -80.19 -26.44 41.1 3VDY
ASG LYS A 13 14 T Turn -146.67 154.91 138.4 3VDY
ASG ASP A 14 15 T Turn -42.06 145.88 108.2 3VDY
ASG PRO A 15 16 C Coil -67.63 146.05 21.5 3VDY
ASG ASP A 16 17 E Strand -96.48 93.21 68.2 3VDY
ASG LEU A 17 18 E Strand -90.90 116.08 64.4 3VDY
ASG ARG A 18 19 E Strand -124.13 165.57 155.1 3VDY
ASG TYR A 19 20 E Strand -127.09 130.11 125.9 3VDY
ASG THR A 20 21 E Strand -65.44 157.82 46.3 3VDY
ASG SER A 21 22 T Turn -68.73 -9.05 140.9 3VDY
ASG ALA A 22 23 T Turn -71.35 -28.55 96.7 3VDY
ASG GLY A 23 24 T Turn 116.00 4.36 52.9 3VDY
ASG ALA A 24 25 E Strand -87.77 130.00 33.7 3VDY
ASG ALA A 25 26 E Strand -65.20 137.99 4.3 3VDY
ASG VAL A 26 27 E Strand -145.33 142.25 13.6 3VDY
ASG ALA A 27 28 E Strand -127.60 146.07 0.0 3VDY
ASG HIS A 28 29 E Strand -121.97 133.23 76.0 3VDY
ASG VAL A 29 30 E Strand -140.69 141.05 8.8 3VDY
ASG THR A 30 31 E Strand -119.09 124.38 38.8 3VDY
ASG LEU A 31 32 E Strand -97.88 127.32 0.0 3VDY
ASG ALA A 32 33 E Strand -89.45 115.44 16.1 3VDY
ASG VAL A 33 34 E Strand -108.42 104.31 31.8 3VDY
ASG ASN A 34 35 E Strand -65.32 129.55 77.9 3VDY
ASG ARG A 35 36 C Coil -66.42 159.40 74.9 3VDY
ASG SER A 36 37 C Coil -74.77 -47.48 113.8 3VDY
ASG PHE A 37 38 C Coil -77.03 -173.35 123.9 3VDY
ASG LYS A 38 39 C Coil -130.75 169.43 141.0 3VDY
ASG ASN A 39 40 T Turn -92.41 -160.98 53.7 3VDY
ASG ALA A 40 41 T Turn -71.63 -23.44 117.0 3VDY
ASG SER A 41 42 T Turn -94.40 -7.38 94.2 3VDY
ASG GLY A 42 43 T Turn 78.75 32.81 42.0 3VDY
ASG GLU A 43 44 C Coil -110.61 155.97 121.3 3VDY
ASG ILE A 44 45 C Coil -96.65 109.29 73.4 3VDY
ASG GLU A 45 46 C Coil -86.34 155.15 104.2 3VDY
ASG ALA A 46 47 E Strand -112.91 157.33 14.5 3VDY
ASG ASP A 47 48 E Strand -103.24 142.66 70.4 3VDY
ASG TYR A 48 49 E Strand -112.32 107.36 151.6 3VDY
ASG VAL A 49 50 E Strand -109.11 127.75 34.4 3VDY
ASG ASN A 50 51 E Strand -87.57 128.51 75.1 3VDY
ASG CYS A 51 52 E Strand -124.29 141.01 1.2 3VDY
ASG THR A 52 53 E Strand -108.48 131.89 7.6 3VDY
ASG LEU A 53 54 E Strand -116.05 155.80 3.0 3VDY
ASG TRP A 54 55 E Strand -133.95 155.11 114.2 3VDY
ASG ARG A 55 56 H AlphaHelix 48.96 -138.39 180.3 3VDY
ASG LYS A 56 57 H AlphaHelix -59.24 -27.43 135.8 3VDY
ASG THR A 57 58 H AlphaHelix -66.41 -44.67 38.3 3VDY
ASG ALA A 58 59 H AlphaHelix -57.39 -45.98 0.0 3VDY
ASG GLU A 59 60 H AlphaHelix -69.49 -49.96 72.5 3VDY
ASG ASN A 60 61 H AlphaHelix -58.07 -44.72 64.3 3VDY
ASG THR A 61 62 H AlphaHelix -68.14 -32.22 3.4 3VDY
ASG ALA A 62 63 H AlphaHelix -58.02 -50.92 28.8 3VDY
ASG LEU A 63 64 H AlphaHelix -65.69 -35.18 119.7 3VDY
ASG TYR A 64 65 H AlphaHelix -105.97 -27.91 130.7 3VDY
ASG CYS A 65 66 C Coil -106.04 160.05 5.0 3VDY
ASG GLN A 66 67 T Turn -149.78 176.41 106.8 3VDY
ASG LYS A 67 68 T Turn -44.91 130.83 133.8 3VDY
ASG GLY A 68 69 T Turn 100.32 -31.05 34.1 3VDY
ASG SER A 69 70 E Strand -54.81 128.36 3.3 3VDY
ASG LEU A 70 71 E Strand -78.13 133.75 29.8 3VDY
ASG VAL A 71 72 E Strand -141.31 143.55 4.6 3VDY
ASG GLY A 72 73 E Strand -114.00 134.27 9.5 3VDY
ASG VAL A 73 74 E Strand -134.76 142.73 8.7 3VDY
ASG SER A 74 75 E Strand -132.89 144.73 36.2 3VDY
ASG GLY A 75 76 E Strand 174.48 -148.80 0.0 3VDY
ASG ARG A 76 77 E Strand -137.17 156.99 98.8 3VDY
ASG ILE A 77 78 E Strand -82.00 132.15 78.0 3VDY
ASG GLN A 78 79 E Strand -126.59 148.06 47.8 3VDY
ASG THR A 79 80 E Strand -115.76 148.55 101.8 3VDY
ASG ARG A 80 81 E Strand -145.58 150.15 98.9 3VDY
ASG SER A 81 82 E Strand -123.62 140.21 70.7 3VDY
ASG TYR A 82 83 E Strand -131.40 -178.81 119.0 3VDY
ASG GLU A 83 84 T Turn -115.90 360.00 178.2 3VDY
ASG VAL A 88 85 T Turn 360.00 35.09 147.2 3VDY
ASG ASN A 89 86 T Turn -90.83 123.48 97.4 3VDY
ASG VAL A 90 87 E Strand -111.25 145.83 58.0 3VDY
ASG TYR A 91 88 E Strand -107.67 118.83 181.4 3VDY
ASG VAL A 92 89 E Strand -116.25 140.75 25.4 3VDY
ASG THR A 93 90 E Strand -126.09 124.22 99.1 3VDY
ASG GLU A 94 91 E Strand -124.59 176.36 19.2 3VDY
ASG VAL A 95 92 E Strand -110.40 127.44 7.6 3VDY
ASG LEU A 96 93 E Strand -92.64 102.67 24.1 3VDY
ASG ALA A 97 94 E Strand -68.92 131.51 6.9 3VDY
ASG ASP A 98 95 E Strand -89.98 -46.48 88.8 3VDY
ASG THR A 99 96 E Strand -131.95 156.95 81.2 3VDY
ASG VAL A 100 97 E Strand -141.65 136.70 27.1 3VDY
ASG ARG A 101 98 E Strand -106.69 132.44 98.1 3VDY
ASG PHE A 102 99 E Strand -89.31 111.75 83.9 3VDY
ASG MET A 103 100 C Coil -102.83 4.31 54.7 3VDY
ASG ASP A 104 101 C Coil -36.97 360.00 127.0 3VDY
ASG MET B 1 1 C Coil 360.00 108.91 234.4 3VDY
ASG PHE B 2 2 C Coil -139.26 -175.36 178.6 3VDY
ASG ASN B 3 3 C Coil -154.38 107.03 58.6 3VDY
ASG GLN B 4 4 C Coil -142.03 141.96 133.7 3VDY
ASG VAL B 5 5 E Strand -136.89 131.39 23.8 3VDY
ASG MET B 6 6 E Strand -119.62 116.73 79.8 3VDY
ASG LEU B 7 7 E Strand -124.71 144.72 30.7 3VDY
ASG VAL B 8 8 E Strand -136.92 116.11 36.2 3VDY
ASG GLY B 9 9 E Strand -150.27 -164.68 4.8 3VDY
ASG ARG B 10 10 E Strand -123.07 134.05 122.6 3VDY
ASG LEU B 11 11 E Strand -64.02 133.42 4.3 3VDY
ASG THR B 12 12 C Coil -84.23 -19.21 45.4 3VDY
ASG LYS B 13 13 C Coil -145.62 162.76 121.7 3VDY
ASG ASP B 14 14 C Coil -56.02 144.26 102.2 3VDY
ASG PRO B 15 15 C Coil -63.53 148.08 20.6 3VDY
ASG ASP B 16 16 E Strand -100.07 85.13 63.2 3VDY
ASG LEU B 17 17 E Strand -83.44 118.22 56.5 3VDY
ASG ARG B 18 18 E Strand -125.61 166.88 153.7 3VDY
ASG TYR B 19 19 E Strand -122.21 136.97 125.4 3VDY
ASG THR B 20 20 T Turn -68.69 158.99 56.3 3VDY
ASG SER B 21 21 T Turn -61.49 -28.98 133.6 3VDY
ASG ALA B 22 22 T Turn -66.21 -22.76 92.8 3VDY
ASG GLY B 23 23 T Turn 117.89 2.30 44.9 3VDY
ASG ALA B 24 24 C Coil -83.30 127.87 6.6 3VDY
ASG ALA B 25 25 E Strand -67.23 140.54 3.2 3VDY
ASG VAL B 26 26 E Strand -150.23 136.97 15.6 3VDY
ASG ALA B 27 27 E Strand -130.28 150.57 0.0 3VDY
ASG HIS B 28 28 E Strand -124.64 116.32 69.3 3VDY
ASG VAL B 29 29 E Strand -118.22 154.42 6.1 3VDY
ASG THR B 30 30 E Strand -122.89 126.06 12.3 3VDY
ASG LEU B 31 31 E Strand -102.22 121.72 0.0 3VDY
ASG ALA B 32 32 E Strand -84.27 117.14 20.3 3VDY
ASG VAL B 33 33 E Strand -114.00 103.45 24.7 3VDY
ASG ASN B 34 34 E Strand -57.95 145.14 96.7 3VDY
ASG ARG B 35 35 C Coil -80.83 -176.37 73.6 3VDY
ASG SER B 36 36 C Coil -110.62 -6.39 90.6 3VDY
ASG PHE B 37 37 C Coil -126.69 164.90 116.6 3VDY
ASG LYS B 38 38 C Coil -94.19 155.90 137.1 3VDY
ASG ASN B 39 39 B Bridge -87.69 169.63 39.5 3VDY
ASG ALA B 40 40 T Turn -32.91 -49.40 118.2 3VDY
ASG SER B 41 41 T Turn -74.32 0.80 86.6 3VDY
ASG GLY B 42 42 T Turn 84.85 28.24 46.7 3VDY
ASG GLU B 43 43 B Bridge -116.29 150.14 120.1 3VDY
ASG ILE B 44 44 C Coil -95.61 117.77 96.1 3VDY
ASG GLU B 45 45 C Coil -97.16 164.69 88.7 3VDY
ASG ALA B 46 46 E Strand -117.70 155.31 14.2 3VDY
ASG ASP B 47 47 E Strand -103.66 139.75 72.0 3VDY
ASG TYR B 48 48 E Strand -105.71 104.35 149.9 3VDY
ASG VAL B 49 49 E Strand -104.81 119.99 33.4 3VDY
ASG ASN B 50 50 E Strand -78.64 125.81 86.9 3VDY
ASG CYS B 51 51 E Strand -122.50 141.27 0.9 3VDY
ASG THR B 52 52 E Strand -112.74 128.76 5.2 3VDY
ASG LEU B 53 53 E Strand -108.90 148.39 1.0 3VDY
ASG TRP B 54 54 E Strand -118.06 154.11 114.1 3VDY
ASG ARG B 55 55 H AlphaHelix 47.63 -130.70 156.0 3VDY
ASG LYS B 56 56 H AlphaHelix -57.73 -40.80 143.1 3VDY
ASG THR B 57 57 H AlphaHelix -54.23 -41.81 41.2 3VDY
ASG ALA B 58 58 H AlphaHelix -67.23 -44.82 0.0 3VDY
ASG GLU B 59 59 H AlphaHelix -67.57 -45.87 60.4 3VDY
ASG ASN B 60 60 H AlphaHelix -64.75 -39.49 60.9 3VDY
ASG THR B 61 61 H AlphaHelix -59.24 -45.46 2.8 3VDY
ASG ALA B 62 62 H AlphaHelix -57.82 -44.61 32.6 3VDY
ASG LEU B 63 63 H AlphaHelix -61.82 -44.52 111.5 3VDY
ASG TYR B 64 64 H AlphaHelix -105.29 -12.78 130.3 3VDY
ASG CYS B 65 65 C Coil -121.59 137.23 3.3 3VDY
ASG GLN B 66 66 T Turn -112.43 179.30 104.6 3VDY
ASG LYS B 67 67 T Turn -40.47 134.65 138.5 3VDY
ASG GLY B 68 68 T Turn 93.07 -27.94 33.5 3VDY
ASG SER B 69 69 E Strand -52.40 135.25 1.9 3VDY
ASG LEU B 70 70 E Strand -80.14 128.54 45.7 3VDY
ASG VAL B 71 71 E Strand -140.52 143.44 2.2 3VDY
ASG GLY B 72 72 E Strand -107.31 143.81 8.4 3VDY
ASG VAL B 73 73 E Strand -143.11 131.80 7.4 3VDY
ASG SER B 74 74 E Strand -122.68 150.30 39.4 3VDY
ASG GLY B 75 75 E Strand 174.85 -156.02 6.7 3VDY
ASG ARG B 76 76 E Strand -123.39 154.85 106.4 3VDY
ASG ILE B 77 77 E Strand -75.63 119.60 79.3 3VDY
ASG GLN B 78 78 E Strand -109.75 148.62 58.5 3VDY
ASG THR B 79 79 E Strand -129.93 137.77 107.8 3VDY
ASG ARG B 80 80 E Strand -119.48 360.00 177.1 3VDY
ASG ASN B 89 81 T Turn 360.00 141.47 191.9 3VDY
ASG VAL B 90 82 T Turn -71.31 103.36 128.5 3VDY
ASG TYR B 91 83 T Turn -105.83 84.31 216.3 3VDY
ASG VAL B 92 84 E Strand -107.98 147.45 62.7 3VDY
ASG THR B 93 85 E Strand -144.02 110.92 88.7 3VDY
ASG GLU B 94 86 E Strand -127.15 176.59 15.3 3VDY
ASG VAL B 95 87 E Strand -95.84 128.55 2.6 3VDY
ASG LEU B 96 88 E Strand -95.24 102.41 25.6 3VDY
ASG ALA B 97 89 E Strand -77.85 134.27 5.4 3VDY
ASG ASP B 98 90 E Strand -107.41 -29.35 95.4 3VDY
ASG THR B 99 91 E Strand -130.87 143.94 76.6 3VDY
ASG VAL B 100 92 E Strand -123.29 132.36 28.5 3VDY
ASG ARG B 101 93 E Strand -109.34 136.42 136.0 3VDY
ASG PHE B 102 94 E Strand -96.03 124.92 82.0 3VDY
ASG MET B 103 95 C Coil -122.33 13.97 42.1 3VDY
ASG ASP B 104 96 C Coil -74.35 128.86 68.6 3VDY
ASG PRO B 105 97 C Coil -68.01 360.00 175.4 3VDY