Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/1f6u.std.txt Дата изменения: Fri Jan 21 05:59:53 2011 Дата индексирования: Fri Feb 11 17:46:30 2011 Кодировка:

REM -------------------------------------------------------------------- 1F6U
REM 1F6U
REM STRIDE: Knowledge-based secondary structure assignment 1F6U
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1F6U
REM 1F6U
REM Residue accessible surface area calculation 1F6U
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1F6U
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1F6U
REM 1F6U
REM ------------------------ General information ----------------------- 1F6U
REM 1F6U
HDR STRUCTURAL PROTEIN/RNA 23-JUN-00 1F6U 1F6U
CMP MOL_ID: 1; 1F6U
CMP MOLECULE: HIV-1 NUCLEOCAPSID PROTEIN; 1F6U
CMP CHAIN: A; 1F6U
CMP ENGINEERED: YES; 1F6U
CMP MOL_ID: 2; 1F6U
CMP MOLECULE: HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING; 1F6U
CMP CHAIN: B; 1F6U
CMP ENGINEERED: YES 1F6U
SRC MOL_ID: 1; 1F6U
SRC ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; 1F6U
SRC ORGANISM_TAXID: 11676; 1F6U
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1F6U
SRC EXPRESSION_SYSTEM_TAXID: 562; 1F6U
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1F6U
SRC EXPRESSION_SYSTEM_PLASMID: PNL4-3; 1F6U
SRC MOL_ID: 2; 1F6U
SRC SYNTHETIC: YES 1F6U
AUT G.K.AMARASINGHE,R.N.DE GUZMAN,R.B.TURNER,K.J.CHANCELLOR, 1F6U
AUT M.F.SUMMERS 1F6U
REM 1F6U
REM -------------------- Secondary structure summary ------------------- 1F6U
REM 1F6U
CHN /data/npidb/pdb/pdb_new/all/pdb1f6u.pdb A 1F6U
REM 1F6U
REM . . . . . 1F6U
SEQ 1 MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCT 50 1F6U
STR GGGGGGGGG BTTTTT B GGG EETTTTEETT GGGTT 1F6U
REM 1F6U
REM 1F6U
SEQ 51 ERQAN 55 1F6U
STR TTTT 1F6U
REM 1F6U
REM 1F6U
REM 1F6U
LOC 310Helix LYS 3 A LYS 11 A 1F6U
LOC 310Helix ALA 25 A ASN 27 A 1F6U
LOC 310Helix MET 46 A ASP 48 A 1F6U
LOC Strand GLY 35 A CYS 36 A 1F6U
LOC Strand LYS 41 A GLU 42 A 1F6U
LOC TurnIV CYS 15 A CYS 18 A 1F6U
LOC TurnIV PHE 16 A GLY 19 A 1F6U
LOC TurnIV CYS 36 A CYS 39 A 1F6U
LOC TurnIV TRP 37 A GLY 40 A 1F6U
LOC TurnIV LYS 41 A HIS 44 A 1F6U
LOC TurnIV CYS 49 A ARG 52 A 1F6U
LOC TurnIV GLU 51 A ALA 54 A 1F6U
REM 1F6U
REM --------------- Detailed secondary structure assignment------------- 1F6U
REM 1F6U
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1F6U
ASG MET A 1 1 C Coil 360.00 -55.62 214.8 1F6U
ASG GLN A 2 2 C Coil -61.74 153.07 144.8 1F6U
ASG LYS A 3 3 G 310Helix -61.73 -36.48 188.7 1F6U
ASG GLY A 4 4 G 310Helix -58.84 -19.63 47.1 1F6U
ASG ASN A 5 5 G 310Helix -57.82 -36.60 85.3 1F6U
ASG PHE A 6 6 G 310Helix -60.44 -13.41 80.0 1F6U
ASG ARG A 7 7 G 310Helix -61.15 -13.07 178.2 1F6U
ASG ASN A 8 8 G 310Helix -59.26 -15.61 104.3 1F6U
ASG GLN A 9 9 G 310Helix -55.86 -27.45 91.8 1F6U
ASG ARG A 10 10 G 310Helix -55.73 -23.04 184.0 1F6U
ASG LYS A 11 11 G 310Helix -131.67 41.32 163.0 1F6U
ASG THR A 12 12 C Coil 82.59 123.85 53.4 1F6U
ASG VAL A 13 13 C Coil -97.35 -175.23 13.0 1F6U
ASG LYS A 14 14 B Bridge -125.78 108.57 160.3 1F6U
ASG CYS A 15 15 T Turn -70.40 115.34 1.5 1F6U
ASG PHE A 16 16 T Turn -82.72 14.86 163.3 1F6U
ASG ASN A 17 17 T Turn -114.50 -58.29 27.3 1F6U
ASG CYS A 18 18 T Turn -92.51 -29.02 64.5 1F6U
ASG GLY A 19 19 T Turn 100.80 -33.33 40.9 1F6U
ASG LYS A 20 20 C Coil -46.48 171.30 135.6 1F6U
ASG GLU A 21 21 B Bridge -120.34 159.43 128.2 1F6U
ASG GLY A 22 22 C Coil 111.02 -30.78 27.5 1F6U
ASG HIS A 23 23 C Coil -141.87 174.74 34.9 1F6U
ASG ILE A 24 24 C Coil -122.12 159.19 24.5 1F6U
ASG ALA A 25 25 G 310Helix -52.43 -39.57 20.6 1F6U
ASG LYS A 26 26 G 310Helix -40.33 -28.07 142.1 1F6U
ASG ASN A 27 27 G 310Helix -151.41 57.77 76.6 1F6U
ASG CYS A 28 28 C Coil -72.27 146.09 24.2 1F6U
ASG ARG A 29 29 C Coil -91.97 18.22 191.8 1F6U
ASG ALA A 30 30 C Coil -68.26 113.16 28.0 1F6U
ASG PRO A 31 31 C Coil -75.00 51.03 140.5 1F6U
ASG ARG A 32 32 C Coil -108.07 152.33 142.8 1F6U
ASG LYS A 33 33 C Coil -96.14 -58.66 202.0 1F6U
ASG LYS A 34 34 C Coil -167.49 117.77 132.7 1F6U
ASG GLY A 35 35 E Strand -158.99 155.79 30.5 1F6U
ASG CYS A 36 36 E Strand -74.06 107.72 2.9 1F6U
ASG TRP A 37 37 T Turn -88.38 11.99 129.9 1F6U
ASG LYS A 38 38 T Turn -98.95 -39.04 95.7 1F6U
ASG CYS A 39 39 T Turn -108.40 -43.30 58.7 1F6U
ASG GLY A 40 40 T Turn 113.28 27.34 56.6 1F6U
ASG LYS A 41 41 E Strand -114.49 114.07 133.1 1F6U
ASG GLU A 42 42 E Strand -71.27 155.89 164.7 1F6U
ASG GLY A 43 43 T Turn 110.48 -30.09 52.8 1F6U
ASG HIS A 44 44 T Turn -132.16 -176.15 31.1 1F6U
ASG GLN A 45 45 C Coil -129.83 170.20 86.7 1F6U
ASG MET A 46 46 G 310Helix -54.65 -48.10 52.2 1F6U
ASG LYS A 47 47 G 310Helix -59.23 -15.85 154.1 1F6U
ASG ASP A 48 48 G 310Helix -123.67 29.04 111.3 1F6U
ASG CYS A 49 49 T Turn -72.87 150.38 16.1 1F6U
ASG THR A 50 50 T Turn -88.34 -26.19 118.1 1F6U
ASG GLU A 51 51 T Turn -109.84 56.56 149.7 1F6U
ASG ARG A 52 52 T Turn -96.94 79.40 109.7 1F6U
ASG GLN A 53 53 T Turn 38.33 49.13 130.3 1F6U
ASG ALA A 54 54 T Turn -121.05 119.40 71.3 1F6U
ASG ASN A 55 55 C Coil -94.41 360.00 222.1 1F6U