Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2moe.std.txt Дата изменения: Fri Oct 9 21:56:44 2015 Дата индексирования: Sun Apr 10 17:36:37 2016 Кодировка:

REM -------------------------------------------------------------------- 2MOE
REM 2MOE
REM STRIDE: Knowledge-based secondary structure assignment 2MOE
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2MOE
REM 2MOE
REM Residue accessible surface area calculation 2MOE
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2MOE
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2MOE
REM 2MOE
REM ------------------------ General information ----------------------- 2MOE
REM 2MOE
HDR HYDROLASE/DNA 24-APR-14 2MOE 2MOE
CMP MOL_ID: 1; 2MOE
CMP MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; 2MOE
CMP CHAIN: A; 2MOE
CMP FRAGMENT: UNP RESIDUES 80-148; 2MOE
CMP SYNONYM: METHYL-CPG-BINDING ENDONUCLEASE 1, METHYL-CPG-BINDI 2MOE
CMP PROTEIN MBD4, MISMATCH-SPECIFIC DNA N-GLYCOSYLASE; 2MOE
CMP EC: 3.2.2.-; 2MOE
CMP ENGINEERED: YES; 2MOE
CMP MOL_ID: 2; 2MOE
CMP MOLECULE: DNA (5'-D(*GP*GP*AP*TP*(5CM)P*GP*GP*CP*TP*C)-3'); 2MOE
CMP CHAIN: B; 2MOE
CMP ENGINEERED: YES; 2MOE
CMP OTHER_DETAILS: MBD4MBD; 2MOE
CMP MOL_ID: 3; 2MOE
CMP MOLECULE: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*CP*C)-3'); 2MOE
CMP CHAIN: C; 2MOE
CMP ENGINEERED: YES; 2MOE
CMP OTHER_DETAILS: DNAREV 2MOE
SRC MOL_ID: 1; 2MOE
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 2MOE
SRC ORGANISM_COMMON: HUMAN; 2MOE
SRC ORGANISM_TAXID: 9606; 2MOE
SRC GENE: MBD4, MED1; 2MOE
SRC MOL_ID: 2; 2MOE
SRC SYNTHETIC: YES; 2MOE
SRC MOL_ID: 3; 2MOE
SRC SYNTHETIC: YES 2MOE
AUT D.C.WILLIAMS,N.M.WALAVALKAR 2MOE
REM 2MOE
REM -------------------- Secondary structure summary ------------------- 2MOE
REM 2MOE
CHN /data/npidb/pdb/pdb_new/all/pdb2moe.pdb A 2MOE
REM 2MOE
REM . . . . . 2MOE
SEQ 1 GSTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANY 50 2MOE
STR TTTT TTTTEEEEEEE TTTTTEEEEEEEETTTEEE HHHHHHH 2MOE
REM 2MOE
REM . . 2MOE
SEQ 51 LHKNGETSLKPEDFDFTVLSK 71 2MOE
STR HHHH TTTTT TTTT 2MOE
REM 2MOE
REM 2MOE
REM 2MOE
LOC AlphaHelix LYS 121 A ASN 131 A 2MOE
LOC Strand GLU 91 A ARG 97 A 2MOE
LOC Strand ARG 105 A SER 112 A 2MOE
LOC Strand LEU 116 A PHE 118 A 2MOE
LOC TurnVIII GLY 78 A GLU 81 A 2MOE
LOC TurnII PRO 87 A TRP 90 A 2MOE
LOC TurnI GLY 100 A ALA 103 A 2MOE
LOC TurnIV THR 102 A ARG 105 A 2MOE
LOC TurnI SER 112 A GLY 115 A 2MOE
LOC TurnI LYS 137 A ASP 140 A 2MOE
LOC TurnIV PRO 138 A PHE 141 A 2MOE
LOC TurnIV THR 144 A SER 147 A 2MOE
REM 2MOE
REM --------------- Detailed secondary structure assignment------------- 2MOE
REM 2MOE
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2MOE
ASG GLY A 78 1 T Turn 360.00 -131.28 107.4 2MOE
ASG SER A 79 2 T Turn -100.66 -27.59 130.8 2MOE
ASG THR A 80 3 T Turn -123.94 126.41 125.7 2MOE
ASG GLU A 81 4 T Turn -106.51 -164.34 140.2 2MOE
ASG CYS A 82 5 C Coil -129.52 61.48 106.2 2MOE
ASG ARG A 83 6 C Coil -55.54 -162.96 197.5 2MOE
ASG LYS A 84 7 C Coil -67.92 130.03 149.8 2MOE
ASG SER A 85 8 C Coil -177.20 -9.21 24.9 2MOE
ASG VAL A 86 9 C Coil -132.70 88.03 77.8 2MOE
ASG PRO A 87 10 T Turn -52.93 137.30 43.3 2MOE
ASG CYS A 88 11 T Turn -71.84 148.93 121.2 2MOE
ASG GLY A 89 12 T Turn 89.63 -11.94 57.5 2MOE
ASG TRP A 90 13 T Turn -113.15 152.51 62.1 2MOE
ASG GLU A 91 14 E Strand -114.43 143.10 110.3 2MOE
ASG ARG A 92 15 E Strand -119.70 138.88 121.0 2MOE
ASG VAL A 93 16 E Strand -133.46 131.49 28.9 2MOE
ASG VAL A 94 17 E Strand -131.51 115.26 71.7 2MOE
ASG LYS A 95 18 E Strand -138.53 131.47 154.5 2MOE
ASG GLN A 96 19 E Strand -76.43 140.76 89.4 2MOE
ASG ARG A 97 20 E Strand -64.93 153.06 85.2 2MOE
ASG LEU A 98 21 C Coil -60.51 -96.66 117.9 2MOE
ASG PHE A 99 22 C Coil -137.36 146.56 181.8 2MOE
ASG GLY A 100 23 T Turn 178.91 -160.48 49.3 2MOE
ASG LYS A 101 24 T Turn -68.26 -10.82 213.2 2MOE
ASG THR A 102 25 T Turn -123.06 7.89 48.9 2MOE
ASG ALA A 103 26 T Turn -29.39 111.38 55.9 2MOE
ASG GLY A 104 27 T Turn 123.80 -10.67 35.7 2MOE
ASG ARG A 105 28 E Strand -75.90 166.20 134.5 2MOE
ASG PHE A 106 29 E Strand -119.30 138.15 155.3 2MOE
ASG ASP A 107 30 E Strand -121.08 134.43 59.7 2MOE
ASG VAL A 108 31 E Strand -137.75 148.97 51.5 2MOE
ASG TYR A 109 32 E Strand -157.21 160.57 73.5 2MOE
ASG PHE A 110 33 E Strand -112.81 140.48 31.9 2MOE
ASG ILE A 111 34 E Strand -111.12 118.88 24.3 2MOE
ASG SER A 112 35 E Strand -43.34 167.32 1.7 2MOE
ASG PRO A 113 36 T Turn -62.59 -31.31 80.5 2MOE
ASG GLN A 114 37 T Turn -79.92 -6.98 103.2 2MOE
ASG GLY A 115 38 T Turn 99.76 17.77 49.4 2MOE
ASG LEU A 116 39 E Strand -85.17 124.27 67.8 2MOE
ASG LYS A 117 40 E Strand -84.42 138.46 108.4 2MOE
ASG PHE A 118 41 E Strand -143.74 146.44 31.9 2MOE
ASG ARG A 119 42 C Coil -146.00 11.76 189.0 2MOE
ASG SER A 120 43 C Coil -130.39 140.90 45.9 2MOE
ASG LYS A 121 44 H AlphaHelix -63.56 -41.39 134.9 2MOE
ASG SER A 122 45 H AlphaHelix -62.27 -52.15 84.0 2MOE
ASG SER A 123 46 H AlphaHelix -52.76 -38.89 28.7 2MOE
ASG LEU A 124 47 H AlphaHelix -64.07 -44.26 7.6 2MOE
ASG ALA A 125 48 H AlphaHelix -63.06 -27.47 44.6 2MOE
ASG ASN A 126 49 H AlphaHelix -80.90 -41.48 105.3 2MOE
ASG TYR A 127 50 H AlphaHelix -62.54 -47.33 19.5 2MOE
ASG LEU A 128 51 H AlphaHelix -62.20 -46.64 6.8 2MOE
ASG HIS A 129 52 H AlphaHelix -66.12 -29.49 133.8 2MOE
ASG LYS A 130 53 H AlphaHelix -61.53 -42.90 144.6 2MOE
ASG ASN A 131 54 H AlphaHelix -80.03 -7.73 84.2 2MOE
ASG GLY A 132 55 C Coil 93.93 -12.41 57.1 2MOE
ASG GLU A 133 56 C Coil -86.07 124.53 95.8 2MOE
ASG THR A 134 57 C Coil -122.97 6.90 93.1 2MOE
ASG SER A 135 58 C Coil -60.60 -46.15 92.3 2MOE
ASG LEU A 136 59 C Coil -66.17 147.17 40.2 2MOE
ASG LYS A 137 60 T Turn -126.52 150.54 132.1 2MOE
ASG PRO A 138 61 T Turn -53.10 -15.86 50.0 2MOE
ASG GLU A 139 62 T Turn -90.82 -7.33 168.4 2MOE
ASG ASP A 140 63 T Turn -75.96 -32.54 72.2 2MOE
ASG PHE A 141 64 T Turn -54.87 135.90 65.5 2MOE
ASG ASP A 142 65 C Coil -114.44 103.98 49.8 2MOE
ASG PHE A 143 66 C Coil -103.03 -14.31 127.6 2MOE
ASG THR A 144 67 T Turn -56.44 162.63 32.5 2MOE
ASG VAL A 145 68 T Turn -119.54 -9.32 121.4 2MOE
ASG LEU A 146 69 T Turn -107.58 19.21 117.7 2MOE
ASG SER A 147 70 T Turn 61.68 123.02 47.6 2MOE
ASG LYS A 148 71 C Coil 44.60 360.00 151.9 2MOE