Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2o9l.std.txt Дата изменения: Wed Jan 19 03:04:57 2011 Дата индексирования: Fri Feb 11 17:57:16 2011 Кодировка:

REM -------------------------------------------------------------------- 2O9L
REM 2O9L
REM STRIDE: Knowledge-based secondary structure assignment 2O9L
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2O9L
REM 2O9L
REM Residue accessible surface area calculation 2O9L
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2O9L
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2O9L
REM 2O9L
REM ------------------------ General information ----------------------- 2O9L
REM 2O9L
HDR RNA POLYMERASE SIGMA FACTOR RPON/DNA 13-DEC-06 2O9L 2O9L
CMP MOL_ID: 1; 2O9L
CMP MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; 2O9L
CMP CHAIN: A; 2O9L
CMP FRAGMENT: C-TERMINAL DOMAIN; 2O9L
CMP ENGINEERED: YES; 2O9L
CMP MOL_ID: 2; 2O9L
CMP MOLECULE: 5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)- 2O9L
CMP 3'; 2O9L
CMP CHAIN: B; 2O9L
CMP ENGINEERED: YES; 2O9L
CMP OTHER_DETAILS: NIRB SIGMA-54 BINDING SITE NON-TEMPLATE 2O9L
CMP STRAND; 2O9L
CMP MOL_ID: 3; 2O9L
CMP MOLECULE: 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)- 2O9L
CMP 3'; 2O9L
CMP CHAIN: C; 2O9L
CMP ENGINEERED: YES; 2O9L
CMP OTHER_DETAILS: NIRB SIGMA-54 BINDING SITE NON-TEMPLATE 2O9L
CMP STRAND 2O9L
SRC MOL_ID: 1; 2O9L
SRC ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; 2O9L
SRC ORGANISM_TAXID: 63363; 2O9L
SRC GENE: RPON; 2O9L
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2O9L
SRC EXPRESSION_SYSTEM_TAXID: 562; 2O9L
SRC EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) WITH ROSETTA.PLYSS; 2O9L
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2O9L
SRC EXPRESSION_SYSTEM_PLASMID: PSKB3; 2O9L
SRC MOL_ID: 2; 2O9L
SRC SYNTHETIC: YES; 2O9L
SRC MOL_ID: 3; 2O9L
SRC SYNTHETIC: YES 2O9L
AUT M.DOUCLEFF,J.G.PELTON,P.S.LEE,D.E.WEMMER 2O9L
REM 2O9L
REM -------------------- Secondary structure summary ------------------- 2O9L
REM 2O9L
CHN /data/npidb/pdb/pdb_new/all/pdb2o9l.pdb A 2O9L
REM 2O9L
REM . . . . . 2O9L
SEQ 1 HMLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYR 50 2O9L
STR TTTTTHHHHHHHHHH TTTTT HHHHHHHHTTTT HHHHHHHH 2O9L
REM 2O9L
REM . 2O9L
SEQ 51 EMLGIPSSRERRI 63 2O9L
STR HHH TTTTTTTT 2O9L
REM 2O9L
REM 2O9L
REM 2O9L
LOC AlphaHelix LEU 8 A GLU 17 A 2O9L
LOC AlphaHelix ASP 27 A LEU 34 A 2O9L
LOC AlphaHelix ARG 43 A LEU 53 A 2O9L
LOC TurnIV LEU 3 A GLY 6 A 2O9L
LOC TurnIV THR 4 A GLU 7 A 2O9L
LOC TurnI ASP 20 A LYS 23 A 2O9L
LOC TurnIV LYS 21 A PRO 24 A 2O9L
LOC TurnI LEU 34 A LYS 37 A 2O9L
LOC TurnI LYS 35 A GLY 38 A 2O9L
LOC TurnIV ILE 55 A SER 58 A 2O9L
LOC TurnIV SER 57 A GLU 60 A 2O9L
LOC TurnI SER 58 A ARG 61 A 2O9L
LOC TurnI ARG 59 A ARG 62 A 2O9L
REM 2O9L
REM --------------- Detailed secondary structure assignment------------- 2O9L
REM 2O9L
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2O9L
ASG HIS A 1 1 C Coil 360.00 -179.50 153.7 2O9L
ASG MET A 2 2 C Coil 52.50 37.33 178.9 2O9L
ASG LEU A 3 3 T Turn -65.71 174.16 46.3 2O9L
ASG THR A 4 4 T Turn -71.19 -168.95 80.0 2O9L
ASG GLN A 5 5 T Turn -48.48 -25.22 187.5 2O9L
ASG GLY A 6 6 T Turn -173.70 40.11 1.9 2O9L
ASG GLU A 7 7 T Turn -61.98 -14.06 72.1 2O9L
ASG LEU A 8 8 H AlphaHelix -111.34 -16.87 8.8 2O9L
ASG MET A 9 9 H AlphaHelix -67.65 -67.05 56.3 2O9L
ASG LYS A 10 10 H AlphaHelix -74.45 18.76 120.5 2O9L
ASG LEU A 11 11 H AlphaHelix -128.80 -38.40 39.5 2O9L
ASG ILE A 12 12 H AlphaHelix -61.99 -35.57 2.0 2O9L
ASG LYS A 13 13 H AlphaHelix -93.57 -13.11 68.4 2O9L
ASG GLU A 14 14 H AlphaHelix -91.59 -17.44 96.2 2O9L
ASG ILE A 15 15 H AlphaHelix -104.29 -46.32 36.1 2O9L
ASG VAL A 16 16 H AlphaHelix -64.66 -35.81 11.6 2O9L
ASG GLU A 17 17 H AlphaHelix -83.74 5.07 66.0 2O9L
ASG ASN A 18 18 C Coil -112.28 -16.28 112.2 2O9L
ASG GLU A 19 19 C Coil -94.71 -86.83 109.7 2O9L
ASG ASP A 20 20 T Turn -139.69 85.11 73.3 2O9L
ASG LYS A 21 21 T Turn -59.40 -17.99 121.5 2O9L
ASG ARG A 22 22 T Turn -87.74 -7.95 200.5 2O9L
ASG LYS A 23 23 T Turn -146.72 71.12 126.4 2O9L
ASG PRO A 24 24 T Turn -69.37 160.49 34.4 2O9L
ASG TYR A 25 25 C Coil -76.60 -174.25 68.6 2O9L
ASG SER A 26 26 C Coil -134.00 169.62 55.7 2O9L
ASG ASP A 27 27 H AlphaHelix -55.64 -31.34 44.5 2O9L
ASG GLN A 28 28 H AlphaHelix -68.24 -54.38 102.6 2O9L
ASG GLU A 29 29 H AlphaHelix -62.17 -47.48 98.0 2O9L
ASG ILE A 30 30 H AlphaHelix -59.63 -38.75 10.4 2O9L
ASG ALA A 31 31 H AlphaHelix -62.20 -34.99 4.8 2O9L
ASG ASN A 32 32 H AlphaHelix -68.20 -54.26 60.2 2O9L
ASG ILE A 33 33 H AlphaHelix -63.20 -32.89 40.7 2O9L
ASG LEU A 34 34 H AlphaHelix -63.30 -20.09 0.0 2O9L
ASG LYS A 35 35 T Turn -81.53 -14.89 113.0 2O9L
ASG GLU A 36 36 T Turn -88.21 -11.73 146.9 2O9L
ASG LYS A 37 37 T Turn -129.06 -27.30 104.9 2O9L
ASG GLY A 38 38 T Turn 163.81 6.24 40.0 2O9L
ASG PHE A 39 39 C Coil -99.30 -39.86 24.7 2O9L
ASG LYS A 40 40 C Coil 37.85 51.06 127.0 2O9L
ASG VAL A 41 41 C Coil -91.66 139.88 10.6 2O9L
ASG ALA A 42 42 C Coil -84.09 165.61 53.2 2O9L
ASG ARG A 43 43 H AlphaHelix -62.57 -26.60 101.9 2O9L
ASG ARG A 44 44 H AlphaHelix -67.82 -34.38 182.6 2O9L
ASG THR A 45 45 H AlphaHelix -84.91 -47.50 56.1 2O9L
ASG VAL A 46 46 H AlphaHelix -66.78 -28.33 0.0 2O9L
ASG ALA A 47 47 H AlphaHelix -64.03 -47.39 8.5 2O9L
ASG LYS A 48 48 H AlphaHelix -67.92 -18.27 136.7 2O9L
ASG TYR A 49 49 H AlphaHelix -89.58 -50.35 56.7 2O9L
ASG ARG A 50 50 H AlphaHelix -57.89 -22.26 54.7 2O9L
ASG GLU A 51 51 H AlphaHelix -69.49 -44.18 133.0 2O9L
ASG MET A 52 52 H AlphaHelix -83.31 -31.57 108.5 2O9L
ASG LEU A 53 53 H AlphaHelix -65.64 -63.48 58.4 2O9L
ASG GLY A 54 54 C Coil 169.96 8.07 63.3 2O9L
ASG ILE A 55 55 T Turn -90.96 125.19 16.7 2O9L
ASG PRO A 56 56 T Turn -69.74 -53.25 61.4 2O9L
ASG SER A 57 57 T Turn -158.89 -10.99 45.4 2O9L
ASG SER A 58 58 T Turn 61.72 -18.40 10.6 2O9L
ASG ARG A 59 59 T Turn -67.11 -42.00 183.0 2O9L
ASG GLU A 60 60 T Turn -76.45 -25.09 116.6 2O9L
ASG ARG A 61 61 T Turn -72.20 -42.82 112.9 2O9L
ASG ARG A 62 62 T Turn -69.49 -58.77 120.1 2O9L
ASG ILE A 63 63 C Coil -54.98 360.00 169.9 2O9L