Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.su/npidb/pdb/pdb_new/stride/3g8x.std.txt Дата изменения: Fri Jan 21 06:27:11 2011 Дата индексирования: Fri Feb 11 21:32:39 2011 Кодировка:

REM -------------------------------------------------------------------- 3G8X
REM 3G8X
REM STRIDE: Knowledge-based secondary structure assignment 3G8X
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3G8X
REM 3G8X
REM Residue accessible surface area calculation 3G8X
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3G8X
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3G8X
REM 3G8X
REM ------------------------ General information ----------------------- 3G8X
REM 3G8X
HDR TRANSCRIPTION/DNA 12-FEB-09 3G8X 3G8X
CMP MOL_ID: 1; 3G8X
CMP MOLECULE: GLUCOCORTICOID RECEPTOR; 3G8X
CMP CHAIN: A, B; 3G8X
CMP FRAGMENT: UNP RESIDUES 440-525; 3G8X
CMP SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; 3G8X
CMP ENGINEERED: YES; 3G8X
CMP MOL_ID: 2; 3G8X
CMP MOLECULE: DNA (5'- 3G8X
CMP D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3'); 3G8X
CMP CHAIN: D; 3G8X
CMP ENGINEERED: YES; 3G8X
CMP OTHER_DETAILS: GLUCOCORTICOID RECEPTOR BINDING SITE GILZ 3G8X
CMP BOTTOM STRAND; 3G8X
CMP MOL_ID: 3; 3G8X
CMP MOLECULE: DNA (5'- 3G8X
CMP D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'); 3G8X
CMP CHAIN: C; 3G8X
CMP ENGINEERED: YES; 3G8X
CMP OTHER_DETAILS: GLUCOCORTICOID RECEPTOR BINDING SITE GILZ 3G8X
CMP TOP STRAND 3G8X
SRC MOL_ID: 1; 3G8X
SRC ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; 3G8X
SRC ORGANISM_COMMON: BROWN RAT,RAT,RATS; 3G8X
SRC ORGANISM_TAXID: 10116; 3G8X
SRC GENE: GRL, NR3C1; 3G8X
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3G8X
SRC EXPRESSION_SYSTEM_TAXID: 562; 3G8X
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; 3G8X
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3G8X
SRC EXPRESSION_SYSTEM_PLASMID: PET28A; 3G8X
SRC MOL_ID: 2; 3G8X
SRC SYNTHETIC: YES; 3G8X
SRC OTHER_DETAILS: OLIGONUCLEOTIDE FROM INTEGRATED DNA 3G8X
SRC TECHNOLOGIES; 3G8X
SRC MOL_ID: 3; 3G8X
SRC SYNTHETIC: YES; 3G8X
SRC OTHER_DETAILS: OLIGONUCLEOTIDE FROM INTEGRATED DNA 3G8X
SRC TECHNOLOGIES 3G8X
AUT M.A.PUFALL,K.R.YAMAMOTO,S.H.MEIJSING 3G8X
REM 3G8X
REM -------------------- Secondary structure summary ------------------- 3G8X
REM 3G8X
CHN /data/npidb/pdb/pdb_new/all/pdb3g8x.pdb A 3G8X
REM 3G8X
REM . . . . . 3G8X
SEQ 1 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKI 50 3G8X
STR BTTTTT B EEETTEEE HHHHHHHHHHHH TTTT TTT 3G8X
REM 3G8X
REM . . 3G8X
SEQ 51 RRKNCPACRYRKCLQAGMNLEARKTK 76 3G8X
STR GGGTTHHHHHHHHHHH TTTTTTT 3G8X
REM 3G8X
CHN /data/npidb/pdb/pdb_new/all/pdb3g8x.pdb B 3G8X
REM 3G8X
REM . . . . . 3G8X
SEQ 1 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIR 50 3G8X
STR TTTTTTTT TBTTB HHHHHHHHHHHH TTTTTTT TTTT 3G8X
REM 3G8X
REM . . 3G8X
SEQ 51 RKNCPACRYRKCLQAGMNLEARKTK 75 3G8X
STR TTTTHHHHHHHHHHH 3G8X
REM 3G8X
REM 3G8X
REM 3G8X
LOC AlphaHelix GLY 458 A GLU 469 A 3G8X
LOC AlphaHelix PRO 493 A ALA 503 A 3G8X
LOC AlphaHelix GLY 458 B GLU 469 B 3G8X
LOC AlphaHelix PRO 493 B ALA 503 B 3G8X
LOC 310Helix ARG 488 A LYS 490 A 3G8X
LOC Strand GLY 449 A HIS 451 A 3G8X
LOC Strand VAL 454 A THR 456 A 3G8X
LOC TurnIV CYS 440 A CYS 443 A 3G8X
LOC TurnI LEU 441 A SER 444 A 3G8X
LOC TurnIV CYS 450 A GLY 453 A 3G8X
LOC TurnI' HIS 451 A VAL 454 A 3G8X
LOC TurnIV CYS 476 A ARG 479 A 3G8X
LOC TurnIV ASP 485 A ARG 488 A 3G8X
LOC TurnVIII LYS 490 A PRO 493 A 3G8X
LOC TurnI ASN 506 A ALA 509 A 3G8X
LOC TurnIV GLU 508 A LYS 511 A 3G8X
LOC TurnI ALA 509 A THR 512 A 3G8X
LOC TurnIV CYS 440 B CYS 443 B 3G8X
LOC TurnIV LEU 441 B SER 444 B 3G8X
LOC TurnIV SER 444 B ALA 447 B 3G8X
LOC TurnIV CYS 450 B GLY 453 B 3G8X
LOC TurnI' HIS 451 B VAL 454 B 3G8X
LOC TurnIV CYS 476 B ARG 479 B 3G8X
LOC TurnIV ARG 479 B CYS 482 B 3G8X
LOC TurnI ASP 485 B ARG 488 B 3G8X
LOC TurnI LYS 486 B ARG 489 B 3G8X
LOC TurnI ARG 488 B ASN 491 B 3G8X
LOC TurnI ARG 489 B CYS 492 B 3G8X
LOC TurnVIII LYS 490 B PRO 493 B 3G8X
LOC Disulfide CYS 457 B CYS 460 B PDB 3G8X
REM 3G8X
REM --------------- Detailed secondary structure assignment------------- 3G8X
REM 3G8X
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3G8X
ASG HIS A 438 1 C Coil 360.00 41.00 182.3 3G8X
ASG MET A 439 2 B Bridge -118.33 149.16 98.3 3G8X
ASG CYS A 440 3 T Turn -59.41 135.86 3.7 3G8X
ASG LEU A 441 4 T Turn -77.53 -16.72 97.0 3G8X
ASG VAL A 442 5 T Turn -94.00 -49.62 0.4 3G8X
ASG CYS A 443 6 T Turn -118.40 -7.06 0.0 3G8X
ASG SER A 444 7 T Turn 73.56 2.86 70.7 3G8X
ASG ASP A 445 8 C Coil -76.15 151.64 28.1 3G8X
ASG GLU A 446 9 B Bridge -62.72 130.91 140.3 3G8X
ASG ALA A 447 10 C Coil -66.61 140.44 23.4 3G8X
ASG SER A 448 11 C Coil -99.29 20.60 72.9 3G8X
ASG GLY A 449 12 E Strand 121.68 -173.88 32.8 3G8X
ASG CYS A 450 13 E Strand -104.23 120.34 82.0 3G8X
ASG HIS A 451 14 E Strand -130.17 138.17 35.5 3G8X
ASG TYR A 452 15 T Turn 45.77 34.08 58.1 3G8X
ASG GLY A 453 16 T Turn 98.32 1.73 45.8 3G8X
ASG VAL A 454 17 E Strand -142.34 141.07 9.5 3G8X
ASG LEU A 455 18 E Strand -62.87 112.73 70.4 3G8X
ASG THR A 456 19 E Strand -148.18 164.77 0.0 3G8X
ASG CYS A 457 20 C Coil -76.96 170.40 5.4 3G8X
ASG GLY A 458 21 H AlphaHelix -73.02 -27.30 27.8 3G8X
ASG SER A 459 22 H AlphaHelix -64.97 -45.46 33.1 3G8X
ASG CYS A 460 23 H AlphaHelix -69.87 -32.18 0.0 3G8X
ASG LYS A 461 24 H AlphaHelix -58.08 -55.33 88.6 3G8X
ASG VAL A 462 25 H AlphaHelix -76.90 -27.67 49.6 3G8X
ASG PHE A 463 26 H AlphaHelix -57.99 -50.11 30.6 3G8X
ASG PHE A 464 27 H AlphaHelix -62.96 -46.81 3.8 3G8X
ASG LYS A 465 28 H AlphaHelix -56.42 -47.77 65.5 3G8X
ASG ARG A 466 29 H AlphaHelix -61.53 -43.71 172.4 3G8X
ASG ALA A 467 30 H AlphaHelix -67.97 -40.65 0.0 3G8X
ASG VAL A 468 31 H AlphaHelix -72.43 -36.32 44.0 3G8X
ASG GLU A 469 32 H AlphaHelix -87.29 -19.01 119.9 3G8X
ASG GLY A 470 33 C Coil -108.67 -145.81 40.7 3G8X
ASG GLN A 471 34 C Coil -109.18 147.01 176.0 3G8X
ASG HIS A 472 35 C Coil -138.16 51.58 78.3 3G8X
ASG ASN A 473 36 C Coil -87.49 62.83 151.9 3G8X
ASG TYR A 474 37 C Coil -87.90 159.05 79.2 3G8X
ASG LEU A 475 38 C Coil -124.13 130.78 89.5 3G8X
ASG CYS A 476 39 T Turn -75.14 135.17 5.3 3G8X
ASG ALA A 477 40 T Turn -95.06 8.13 3.8 3G8X
ASG GLY A 478 41 T Turn -122.52 -123.07 27.6 3G8X
ASG ARG A 479 42 T Turn -130.72 38.50 170.7 3G8X
ASG ASN A 480 43 C Coil 55.69 29.54 102.8 3G8X
ASG ASP A 481 44 C Coil -141.03 45.58 64.2 3G8X
ASG CYS A 482 45 C Coil -67.93 141.25 9.5 3G8X
ASG ILE A 483 46 C Coil -67.86 129.22 89.4 3G8X
ASG ILE A 484 47 C Coil -117.53 87.11 6.6 3G8X
ASG ASP A 485 48 T Turn -113.32 -165.81 36.9 3G8X
ASG LYS A 486 49 T Turn -57.91 -40.77 108.8 3G8X
ASG ILE A 487 50 T Turn -85.85 -54.20 114.4 3G8X
ASG ARG A 488 51 G 310Helix -68.12 -17.59 39.6 3G8X
ASG ARG A 489 52 G 310Helix -51.32 -32.82 49.7 3G8X
ASG LYS A 490 53 G 310Helix -69.83 -26.61 180.6 3G8X
ASG ASN A 491 54 T Turn -61.08 -45.39 21.3 3G8X
ASG CYS A 492 55 T Turn -133.95 89.38 2.6 3G8X
ASG PRO A 493 56 H AlphaHelix -60.97 -32.67 33.3 3G8X
ASG ALA A 494 57 H AlphaHelix -60.52 -51.30 19.0 3G8X
ASG CYS A 495 58 H AlphaHelix -68.29 -32.13 0.4 3G8X
ASG ARG A 496 59 H AlphaHelix -64.60 -49.12 19.6 3G8X
ASG TYR A 497 60 H AlphaHelix -57.72 -42.89 32.1 3G8X
ASG ARG A 498 61 H AlphaHelix -55.89 -45.23 71.5 3G8X
ASG LYS A 499 62 H AlphaHelix -67.35 -31.00 57.9 3G8X
ASG CYS A 500 63 H AlphaHelix -63.33 -46.97 0.0 3G8X
ASG LEU A 501 64 H AlphaHelix -67.27 -37.99 84.4 3G8X
ASG GLN A 502 65 H AlphaHelix -69.17 -36.77 140.3 3G8X
ASG ALA A 503 66 H AlphaHelix -72.29 -10.08 40.7 3G8X
ASG GLY A 504 67 C Coil 101.81 7.32 39.9 3G8X
ASG MET A 505 68 C Coil -58.75 144.62 6.0 3G8X
ASG ASN A 506 69 T Turn -160.52 151.06 57.0 3G8X
ASG LEU A 507 70 T Turn -69.36 -42.97 36.3 3G8X
ASG GLU A 508 71 T Turn -86.96 23.53 101.0 3G8X
ASG ALA A 509 72 T Turn -62.03 -2.70 22.6 3G8X
ASG ARG A 510 73 T Turn -75.44 -73.91 211.7 3G8X
ASG LYS A 511 74 T Turn -74.16 -3.35 154.2 3G8X
ASG THR A 512 75 T Turn -83.85 -29.41 87.0 3G8X
ASG LYS A 513 76 C Coil 43.91 360.00 205.6 3G8X
ASG MET B 439 1 C Coil 360.00 137.98 154.6 3G8X
ASG CYS B 440 2 T Turn -67.55 130.97 0.3 3G8X
ASG LEU B 441 3 T Turn -69.27 -2.85 102.5 3G8X
ASG VAL B 442 4 T Turn -112.69 -68.88 6.4 3G8X
ASG CYS B 443 5 T Turn -104.02 -4.69 0.3 3G8X
ASG SER B 444 6 T Turn 57.47 28.17 54.7 3G8X
ASG ASP B 445 7 T Turn -79.41 -163.78 25.0 3G8X
ASG GLU B 446 8 T Turn -55.69 92.86 134.0 3G8X
ASG ALA B 447 9 T Turn -55.55 115.41 33.8 3G8X
ASG SER B 448 10 C Coil -90.87 -73.52 79.5 3G8X
ASG GLY B 449 11 C Coil 175.03 131.81 34.0 3G8X
ASG CYS B 450 12 T Turn -30.98 113.15 96.6 3G8X
ASG HIS B 451 13 B Bridge -113.11 126.05 50.7 3G8X
ASG TYR B 452 14 T Turn 54.59 39.59 67.0 3G8X
ASG GLY B 453 15 T Turn 105.29 -23.70 64.9 3G8X
ASG VAL B 454 16 B Bridge -127.66 145.18 6.9 3G8X
ASG LEU B 455 17 C Coil -65.70 121.01 51.5 3G8X
ASG THR B 456 18 C Coil -143.17 165.77 0.0 3G8X
ASG CYS B 457 19 C Coil -66.73 171.65 0.4 3G8X
ASG GLY B 458 20 H AlphaHelix -70.98 -35.24 29.1 3G8X
ASG SER B 459 21 H AlphaHelix -67.11 -38.89 29.9 3G8X
ASG CYS B 460 22 H AlphaHelix -71.27 -29.05 0.0 3G8X
ASG LYS B 461 23 H AlphaHelix -57.41 -49.38 75.8 3G8X
ASG VAL B 462 24 H AlphaHelix -78.73 -40.26 40.7 3G8X
ASG PHE B 463 25 H AlphaHelix -49.02 -46.76 23.9 3G8X
ASG PHE B 464 26 H AlphaHelix -68.78 -44.96 4.6 3G8X
ASG LYS B 465 27 H AlphaHelix -58.46 -43.73 75.4 3G8X
ASG ARG B 466 28 H AlphaHelix -61.06 -43.28 168.1 3G8X
ASG ALA B 467 29 H AlphaHelix -62.57 -39.88 3.4 3G8X
ASG VAL B 468 30 H AlphaHelix -77.44 -45.77 59.6 3G8X
ASG GLU B 469 31 H AlphaHelix -78.06 -64.19 115.2 3G8X
ASG GLY B 470 32 C Coil -71.64 -165.24 39.1 3G8X
ASG GLN B 471 33 C Coil -174.79 -170.40 146.8 3G8X
ASG HIS B 472 34 C Coil 175.56 134.24 75.6 3G8X
ASG ASN B 473 35 C Coil -85.90 128.77 157.9 3G8X
ASG TYR B 474 36 C Coil -98.76 126.76 66.3 3G8X
ASG LEU B 475 37 C Coil -112.63 130.50 86.2 3G8X
ASG CYS B 476 38 T Turn -68.98 140.32 6.8 3G8X
ASG ALA B 477 39 T Turn -99.06 -3.51 3.2 3G8X
ASG GLY B 478 40 T Turn -105.85 -97.34 18.9 3G8X
ASG ARG B 479 41 T Turn -144.08 23.52 121.9 3G8X
ASG ASN B 480 42 T Turn 64.47 29.62 102.8 3G8X
ASG ASP B 481 43 T Turn -147.28 44.83 127.5 3G8X
ASG CYS B 482 44 T Turn -65.70 154.90 7.9 3G8X
ASG ILE B 483 45 C Coil -74.12 118.81 74.4 3G8X
ASG ILE B 484 46 C Coil -108.42 92.81 10.8 3G8X
ASG ASP B 485 47 T Turn -121.40 -169.92 35.1 3G8X
ASG LYS B 486 48 T Turn -54.93 -39.09 111.9 3G8X
ASG ILE B 487 49 T Turn -79.68 -42.72 111.8 3G8X
ASG ARG B 488 50 T Turn -102.16 -9.15 42.3 3G8X
ASG ARG B 489 51 T Turn -54.22 -29.05 52.7 3G8X
ASG LYS B 490 52 T Turn -66.18 -31.48 171.6 3G8X
ASG ASN B 491 53 T Turn -64.11 -43.18 21.4 3G8X
ASG CYS B 492 54 T Turn -127.46 88.37 3.0 3G8X
ASG PRO B 493 55 H AlphaHelix -60.21 -35.09 23.7 3G8X
ASG ALA B 494 56 H AlphaHelix -52.66 -58.51 14.9 3G8X
ASG CYS B 495 57 H AlphaHelix -65.13 -40.06 0.2 3G8X
ASG ARG B 496 58 H AlphaHelix -60.56 -45.76 17.8 3G8X
ASG TYR B 497 59 H AlphaHelix -65.67 -41.50 60.5 3G8X
ASG ARG B 498 60 H AlphaHelix -59.38 -45.85 60.8 3G8X
ASG LYS B 499 61 H AlphaHelix -79.86 -9.70 51.0 3G8X
ASG CYS B 500 62 H AlphaHelix -66.79 -51.59 0.0 3G8X
ASG LEU B 501 63 H AlphaHelix -58.22 -44.48 76.8 3G8X
ASG GLN B 502 64 H AlphaHelix -71.76 -24.35 132.2 3G8X
ASG ALA B 503 65 H AlphaHelix -80.64 -6.57 41.4 3G8X
ASG GLY B 504 66 C Coil 108.93 6.52 45.2 3G8X
ASG MET B 505 67 C Coil -68.55 139.81 9.7 3G8X
ASG ASN B 506 68 C Coil -157.02 135.93 84.2 3G8X
ASG LEU B 507 69 C Coil -74.20 20.33 36.4 3G8X
ASG GLU B 508 70 C Coil -124.52 108.42 109.6 3G8X
ASG ALA B 509 71 C Coil -98.41 36.55 92.0 3G8X
ASG ARG B 510 72 C Coil -71.63 14.91 189.7 3G8X
ASG LYS B 511 73 C Coil -56.99 -6.43 93.9 3G8X
ASG THR B 512 74 C Coil -58.35 -11.76 105.1 3G8X
ASG LYS B 513 75 C Coil -147.19 360.00 134.0 3G8X