Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/3m7n.pdb1.pdb.hmm.txt Дата изменения: Fri May 17 00:25:23 2013 Дата индексирования: Fri Feb 28 21:47:28 2014 Кодировка:

# pfam_scan.pl, run at Fri May 17 00:25:17 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/3m7n.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

3m7n_A 3 40 3 41 PF14382.1 ECR1_N Domain 1 38 39 48.3 4.1e-13 1 No_clan
#HMM iVvPGevLgsaseymaGhGTYvedgyIyASvaGvvriv
#MATCH +V+PG+++gsa+ey+ G+G Y+e+g+++A vaG++ i+
#PP 79*******************************99885
#SEQ FVMPGDRIGSAEEYVKGEGVYEEGGELFAAVAGKLIIK
#CS EE-TT-EEEETTTSEE-TTEEEETTEEEESSSEEEEEE
3m7n_A 141 164 137 171 PF14446.1 Prok-RING_1 Family 6 29 55 19.2 0.00071 0 CL0229
#HMM ekCevCgkklkdkdDiVvCpeCga
#MATCH + C+ C+ ++ + Di+ CpeCg
#PP 68********************95
#SEQ ALCSNCKTEMVREGDILKCPECGR
3m7n_B 3 40 3 41 PF14382.1 ECR1_N Domain 1 38 39 48.3 4.1e-13 1 No_clan
#HMM iVvPGevLgsaseymaGhGTYvedgyIyASvaGvvriv
#MATCH +V+PG+++gsa+ey+ G+G Y+e+g+++A vaG++ i+
#PP 79*******************************99885
#SEQ FVMPGDRIGSAEEYVKGEGVYEEGGELFAAVAGKLIIK
#CS EE-TT-EEEETTTSEE-TTEEEETTEEEESSSEEEEEE
3m7n_B 141 164 137 171 PF14446.1 Prok-RING_1 Family 6 29 55 19.2 0.00071 0 CL0229
#HMM ekCevCgkklkdkdDiVvCpeCga
#MATCH + C+ C+ ++ + Di+ CpeCg
#PP 68********************95
#SEQ ALCSNCKTEMVREGDILKCPECGR
3m7n_C 3 40 3 41 PF14382.1 ECR1_N Domain 1 38 39 48.3 4.1e-13 1 No_clan
#HMM iVvPGevLgsaseymaGhGTYvedgyIyASvaGvvriv
#MATCH +V+PG+++gsa+ey+ G+G Y+e+g+++A vaG++ i+
#PP 79*******************************99885
#SEQ FVMPGDRIGSAEEYVKGEGVYEEGGELFAAVAGKLIIK
#CS EE-TT-EEEETTTSEE-TTEEEETTEEEESSSEEEEEE
3m7n_C 141 164 137 171 PF14446.1 Prok-RING_1 Family 6 29 55 19.2 0.00071 0 CL0229
#HMM ekCevCgkklkdkdDiVvCpeCga
#MATCH + C+ C+ ++ + Di+ CpeCg
#PP 68********************95
#SEQ ALCSNCKTEMVREGDILKCPECGR
3m7n_D 18 147 18 147 PF01138.16 RNase_PH Domain 1 132 132 121.3 3.2e-35 1 CL0329
#HMM elRplsietgvlsranGSaylelGdtkvlatvtgpieerpseerddaegeldveveyapfasverrregrpsdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinAaslALadagip
#MATCH elRp++ie +vl+ra+GS+yle+G++kv+a+v gp+e++p++ +d ++ + ++++apf+ +er+r p++++ie+s++ ++a++++i+ e +p+s idi+v+vl++d + + a+ nAas+AL+dag+p
#PP 79************************************888887666666***************77.57*****************************************.******************98
#SEQ ELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADA-GSRTACLNAASVALVDAGVP
3m7n_D 151 218 150 218 PF03725.10 RNase_PH_C Domain 2 68 68 60.1 1.5e-16 1 No_clan
#HMM pvgavtvGkigdkivlDptkeEedlgesdldlav...agtkdvvtlmqeggsqeideeslleaielAkkg
#MATCH ++ v+vGk ++++vlDp keE++ ge+d+++a +g+ ++++l+q++g ++++++++aielAkkg
#PP 7889************************************************..**************97
#SEQ MITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFlirNGKIESIALLQMDGR--MTRDEVKQAIELAKKG
#CS --EEEEEEEETTEEEES--HHHHHHSSEEEEEEE...ETTTEEEEEEEESSSE.EEHHHHHHHHHHHHHH
3m7n_E 20 149 20 149 PF01138.16 RNase_PH Domain 1 132 132 121.2 3.4e-35 1 CL0329
#HMM elRplsietgvlsranGSaylelGdtkvlatvtgpieerpseerddaegeldveveyapfasverrregrpsdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinAaslALadagip
#MATCH elRp++ie +vl+ra+GS+yle+G++kv+a+v gp+e++p++ +d ++ + ++++apf+ +er+r p++++ie+s++ ++a++++i+ e +p+s idi+v+vl++d + + a+ nAas+AL+dag+p
#PP 79************************************888887666666***************77.57*****************************************.******************98
#SEQ ELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADA-GSRTACLNAASVALVDAGVP
3m7n_E 153 220 152 220 PF03725.10 RNase_PH_C Domain 2 68 68 60.0 1.5e-16 1 No_clan
#HMM pvgavtvGkigdkivlDptkeEedlgesdldlav...agtkdvvtlmqeggsqeideeslleaielAkkg
#MATCH ++ v+vGk ++++vlDp keE++ ge+d+++a +g+ ++++l+q++g ++++++++aielAkkg
#PP 7889************************************************..**************97
#SEQ MITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFlirNGKIESIALLQMDGR--MTRDEVKQAIELAKKG
#CS --EEEEEEEETTEEEES--HHHHHHSSEEEEEEE...ETTTEEEEEEEESSSE.EEHHHHHHHHHHHHHH
3m7n_F 18 147 18 147 PF01138.16 RNase_PH Domain 1 132 132 121.2 3.3e-35 1 CL0329
#HMM elRplsietgvlsranGSaylelGdtkvlatvtgpieerpseerddaegeldveveyapfasverrregrpsdeeielsrlleralrpsillekkpkskididvtvlssdggslldalinAaslALadagip
#MATCH elRp++ie +vl+ra+GS+yle+G++kv+a+v gp+e++p++ +d ++ + ++++apf+ +er+r p++++ie+s++ ++a++++i+ e +p+s idi+v+vl++d + + a+ nAas+AL+dag+p
#PP 79************************************888887666666***************77.57*****************************************.******************98
#SEQ ELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADA-GSRTACLNAASVALVDAGVP
3m7n_F 151 218 150 218 PF03725.10 RNase_PH_C Domain 2 68 68 60.0 1.5e-16 1 No_clan
#HMM pvgavtvGkigdkivlDptkeEedlgesdldlav...agtkdvvtlmqeggsqeideeslleaielAkkg
#MATCH ++ v+vGk ++++vlDp keE++ ge+d+++a +g+ ++++l+q++g ++++++++aielAkkg
#PP 7889************************************************..**************97
#SEQ MITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFlirNGKIESIALLQMDGR--MTRDEVKQAIELAKKG
#CS --EEEEEEEETTEEEES--HHHHHHSSEEEEEEE...ETTTEEEEEEEESSSE.EEHHHHHHHHHHHHHH
3m7n_G 28 163 28 163 PF01138.16 RNase_PH Domain 1 132 132 101.5 4e-29 1 CL0329
#HMM elRplsietgvlsranGSaylelGdtkvlatvtgpieerpseer.ddaegeldveveyapfasverrregrpsdeeielsrlleralrpsill........ekkpkskididvtvlssdggslldalinAaslALadagip
#MATCH e+R+++i +v+++a+GSa+++lGdt+v+++v+++ e p ++ d g++ v+ e+ p+as++++ g p++ +iel+r+++r +r+s + e+++ + + +d++ l++dg +llda+ +Aa++AL+++++p
#PP 8***********************************99.8888645..478***************77.9**********************88888889899999**************.******************98
#SEQ EFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGE-PYPDTpD--RGVIIVNAELVPLASPTFEP-GPPDENSIELARVVDRGIRESEAVdlsklvieEGEKVWIVFVDIHALDDDG-NLLDASALAAIAALMNTKVP
3m7n_G 179 242 179 245 PF03725.10 RNase_PH_C Domain 1 65 68 40.9 1.4e-10 1 No_clan
#HMM apvgavtvGkigdkivlDptkeEedlgesdldlavagtkdvvtlmqeggsqeideeslleaielA
#MATCH ++++ vt ++g+k+++Dp+ eE ++g+ +l+++ +++++vv+++++gg +de+ + e ++++
#PP 58999******************9999999999999999**********98.*********9986
#SEQ DLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYL-LDEKLFDELLDVS
#CS S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTTEEEEEEEESSSE.EEHHHHHHHHHHH
3m7n_H 30 165 30 165 PF01138.16 RNase_PH Domain 1 132 132 101.5 4.2e-29 1 CL0329
#HMM elRplsietgvlsranGSaylelGdtkvlatvtgpieerpseer.ddaegeldveveyapfasverrregrpsdeeielsrlleralrpsill........ekkpkskididvtvlssdggslldalinAaslALadagip
#MATCH e+R+++i +v+++a+GSa+++lGdt+v+++v+++ e p ++ d g++ v+ e+ p+as++++ g p++ +iel+r+++r +r+s + e+++ + + +d++ l++dg +llda+ +Aa++AL+++++p
#PP 8***********************************99.8888645..478***************77.9**********************88888889899999**************.******************98
#SEQ EFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGE-PYPDTpD--RGVIIVNAELVPLASPTFEP-GPPDENSIELARVVDRGIRESEAVdlsklvieEGEKVWIVFVDIHALDDDG-NLLDASALAAIAALMNTKVP
3m7n_H 181 244 181 247 PF03725.10 RNase_PH_C Domain 1 65 68 40.9 1.4e-10 1 No_clan
#HMM apvgavtvGkigdkivlDptkeEedlgesdldlavagtkdvvtlmqeggsqeideeslleaielA
#MATCH ++++ vt ++g+k+++Dp+ eE ++g+ +l+++ +++++vv+++++gg +de+ + e ++++
#PP 58999******************9999999999999999**********98.*********9986
#SEQ DLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYL-LDEKLFDELLDVS
#CS S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTTEEEEEEEESSSE.EEHHHHHHHHHHH
3m7n_I 30 165 30 165 PF01138.16 RNase_PH Domain 1 132 132 101.5 4.2e-29 1 CL0329
#HMM elRplsietgvlsranGSaylelGdtkvlatvtgpieerpseer.ddaegeldveveyapfasverrregrpsdeeielsrlleralrpsill........ekkpkskididvtvlssdggslldalinAaslALadagip
#MATCH e+R+++i +v+++a+GSa+++lGdt+v+++v+++ e p ++ d g++ v+ e+ p+as++++ g p++ +iel+r+++r +r+s + e+++ + + +d++ l++dg +llda+ +Aa++AL+++++p
#PP 8***********************************99.8888645..478***************77.9**********************88888889899999**************.******************98
#SEQ EFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGE-PYPDTpD--RGVIIVNAELVPLASPTFEP-GPPDENSIELARVVDRGIRESEAVdlsklvieEGEKVWIVFVDIHALDDDG-NLLDASALAAIAALMNTKVP
3m7n_I 181 244 181 247 PF03725.10 RNase_PH_C Domain 1 65 68 40.9 1.4e-10 1 No_clan
#HMM apvgavtvGkigdkivlDptkeEedlgesdldlavagtkdvvtlmqeggsqeideeslleaielA
#MATCH ++++ vt ++g+k+++Dp+ eE ++g+ +l+++ +++++vv+++++gg +de+ + e ++++
#PP 58999******************9999999999999999**********98.*********9986
#SEQ DLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYL-LDEKLFDELLDVS
#CS S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTTEEEEEEEESSSE.EEHHHHHHHHHHH