Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/3j6v.pdb1.pdb.hmm.txt Дата изменения: Tue Jul 15 15:31:52 2014 Дата индексирования: Mon Apr 11 12:44:56 2016 Кодировка:

# pfam_scan.pl, run at Tue Jul 15 15:31:39 2014
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/3j6v.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

3j6v_B 24 120 24 125 PF00318.15 Ribosomal_S2 Family 1 97 211 83.1 1.5e-23 1 No_clan
#HMM LleagvhlGhqtrkwnpkmksyiygerngihiidlektlkalkralkvvkelakkkgkilfvgtkkqaqkivekaakrtgqsyvnnrWlgGlLTNwk
#MATCH L++a+vhlGh++ + m++yi+g+r g+ iidle+t+ +l+ al++ +++a ++g ilfv+ +q ++++e++a+ +g++++++ + gGlLTN +
#PP 89**************************************************99*****************************************76
#SEQ LFNARVHLGHKAGCRHRFMEPYIFGSRLGQDIIDLEQTATHLQLALNFTAHVAFRGGIILFVSRARQFSHLIESTARSCGEYAHTRYFKGGLLTNAP
#CS HHHHCCTCS--SSS--CCCHCCEEEECTTSEEE-HHHHHHHHHHHHHHHCCCHHCTGGEEEEE-SHHHHHHHHHHHHCCTSCEEESS--TTTTTTCC
3j6v_B 128 200 123 201 PF00318.15 Ribosomal_S2 Family 142 210 211 72.8 2.1e-20 1 No_clan
#HMM klPdliivldp....nkeeiairEasklnIpiialvDtntdpslidypIPgNddslksiklilnllakaileg
#MATCH +lPdlii+l++ + + a+r+a+k+ Ip++++vDtn++p li+yp+PgNdds ++++l+++l+ +a+ ++
#PP 78******98844446679*************************************************99876
#SEQ RLPDLIIFLHTlnnvFEPHVAVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPAVQLFCQLFQTAVTRA
#CS S.-SEEEES-T....TTTHHHHHHHHHCT--EEEEE-TTS-GCCSSEEEES-SSSHHHHHHHHHHHHHHHHHC
3j6v_E 130 194 129 196 PF00333.15 Ribosomal_S5 Domain 2 65 67 42.7 3.3e-11 1 CL0196
#HMM leekvlkikrVskvt.kgGrrlrFkAlvvVGdknGrvGlGvgkakevaeAIrkAieeAkknliev
#MATCH + ++l+++ V ++t k Gr+ + + lv+VG+ +G G+++gka e a+A rkA + A l +
#PP 7889********998578***************************************99877665
#SEQ FDTRILEVRNVFNMTaKEGRKRSVRVLVAVGNGRGAAGFAIGKATERADAFRKAKNRAVHYLHYI
#CS HEEEEEEEEECCCEE.TTEECCEEEEEEEEEHSSSEEEEEEEEESSHHHHHHHHHHHHCCTEEE-
3j6v_E 207 278 206 279 PF03719.10 Ribosomal_S5_C Domain 2 73 74 62.0 2.2e-17 1 CL0329
#HMM egkfgavkVllkpAprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrtveevaakr
#MATCH + +f+ +++ +k +prG+G+++++a+ ++++l+GikD++ak+ gs n++ + ++ f++L++++t++++a+k+
#PP 568999***************************************************************986
#SEQ SLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKK
#CS EEEETTEEEEEEE--TTSEEES-HHHHHHHHTTT-SEEEEEEEEB--HHHHHHHHHHHHTT---HHHHHHHH
3j6v_F 3 95 2 96 PF01250.12 Ribosomal_S6 Domain 2 91 92 51.0 9.2e-14 1 No_clan
#HMM kYEtmlilrpdlseeevkaliekvkklleenggeivkveewgkrkLaYpIkkk....keGyYvlinfeaepeavaelerklrinedvlRflivk
#MATCH +YE+ lil++ + e++a++++ + l ++g+ + ++e++g+r+L Y+++ + ++G Y+l++f a++++va++ ++l+ + dv+R +vk
#PP 6********99988.55666666666777889******************9998898********************************99887
#SEQ RYELALILKAMQRP-ETAAALKRTLEALMDRGAVVRSLENLGERTLPYKMSAHsqrhTRGGYFLVDFYAPTTTVASIMEHLSRDIDVIRPNVVK
#CS EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTE....EEEEEEEEEEEESCCCHHHHHHHHHTSTTEEEEEEEE
3j6v_G 44 196 28 196 PF00177.16 Ribosomal_S7 Domain 13 148 148 134.5 2e-39 1 No_clan
#HMM pdpkynsalveklinklmkdGkkslAekivykaleii...............ekktkknplevlekaienvkPsvevksrrvgGatyqvPvevsperrvalAirwileaarkrsek..smaekLaeElldAaknkGsavkkkeelhkmAeanr
#MATCH +++++++ +++k++n++mk G+k lA++++ ++le + + ++++np+ ++++a++n++P +++ + +gG yqvPv+++++rr+ lA++w+++ +r+++ + m ekL++Ell+A+ n+G ++k+k ++hkmAeanr
#PP 47899999*****************************999999999999973334777*****************************************************6554434899*******************************9
#SEQ TSSVFEDPVISKFTNMMMKGGNKILARSLMTQTLEAVkrkqfekyhaasaeeQATVERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLAERRRRFLAMKWMITECREKKPRrmLMPEKLSQELLEAFCNRGPVIKRKHDMHKMAEANR
#CS ...SSGGGHHHHHHHHHCTX-HHHHHHHHHHHHHHHH...............HHHHSS-CHHHHHHHHHHCS-SEEEEEEEETTEEEEEEEEE-HHHHHHHHHHHHHHHHHCCSSS..-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHH-
3j6v_I 207 329 207 329 PF00380.14 Ribosomal_S9 Family 1 121 121 121.4 2.3e-35 1 No_clan
#HMM GrrKtavArvklke.gkgkikingksleeylkreilrekvleplevveeekkfdirvkvkGGGlsgqaeAirlaiaraLvald.eksrkeLkkkglltrDsRrkerkkyglkkARkrsqfskR
#MATCH G+rKta A++ + g+gki+ing ++ y++ +++re+++ p+++++ +k d++++v+GGG s+qa+Airla++raL+++ e+ + ++++gllt+D+R+ erkk+g+++AR++++++kR
#PP 9********999544*****************************************************************976266999*********************************9
#SEQ GKRKTANAEAVVYGhGSGKIEINGVDYLLYFPVTQDREQLMFPFHFLDRLGKHDVTCTVSGGGRSSQAGAIRLAMSRALCSFItEDEVEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR
#CS EEESSEEEEEEEEE.SSSEEEESSSBHHHHSTT-TTGGGTTHHHHTTTTSTSEEEEEEEESS-HHHHHHHHHHHHHHHHHHSS.TTTHTTTTTTTTSS-B--S--S-BTTSSSSSB--S-S--
3j6v_J 78 173 76 174 PF00338.17 Ribosomal_S10 Family 3 96 97 78.7 2.2e-22 1 No_clan
#HMM iklkSydhkllekavkqiieaakrlglkvsgpiplPtkrkrvtvlrsphvdkksreqfeirthkrlidipnatpktvdall.kirl..pegVeveik
#MATCH + +k++d+++l+++ +++ aak+lg+ v +++ P+k++r+t+l+s+h+ kk+r q+e+rt r+++++++t +t+d l +i++ pegV +e++
#PP 5689*************************.799***********************************************99999999*******97
#SEQ VLVKGHDKAVLDSYEYFAVLAAKELGISV-KVHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELEHLTGSTADVYLeYIQRnlPEGVAMEVT
#CS EEEEESSHHHHHHHHHHHHHHHHTTTSEEEEEEEECEEEEEEEEESSSSS-SSSEEEEEEEEEEEEEEESCE-HHHHHHHC.HS--..-SSEEEEEE
3j6v_K 64 172 63 172 PF00411.14 Ribosomal_S11 Family 2 110 110 94.0 5.8e-27 1 CL0267
#HMM iahiqasfnntiititDvkGrvvlsssaGslgvkasrksspyaaktaaekvakkalekgikavevkikgpgiGkeaalralkksgliisqiedVtplphngcRkpkkrR
#MATCH iahi+as+nnt i++ + ++ +s G+ g+++ +k + aa+ta ++a ka+ kg+++v v +kg g+G+ +a+++l gl++ i+d tp+phngcR++k+rR
#PP 79**********************************************************************************************************9
#SEQ IAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARR
3j6v_L 16 108 1 109 PF00164.20 Ribosom_S12_S23 Family 17 109 122 121.4 1.3e-35 1 CL0021
#HMM kkkskalegapqkkgvvlevvtvepkkPNSAlRKvarvrLingkevtayiPgeghnlqEhdevlirGgrvkDlpGvrykvvkGaldvagvkdr
#MATCH +k + eg pq kgvvl+ + +pkkPNSA RK++rvrL++g+e + +iPgeghnlqEh +vl++Ggr +DlpGv+ kvv+G++d+ +v+++
#PP 4677899*********************************************************************************99944
#SEQ PSKPGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLKVVRGKYDCGHVQKK
#CS GGC-STTTT-SEEEEEECEEEEEE-STT--SEEEEEEEEETTSEEEEEE--SSSGT--TT-EEEEEESS-TTSTT--EEEECTSTTCSS-CT-
3j6v_N 74 126 73 127 PF00253.16 Ribosomal_S14 Family 2 54 55 70.1 6.9e-20 1 No_clan
#HMM klsklprkssytrgrnrCvltGrprgvirkfgLcRicFRelAskgllpGfkKa
#MATCH ++ +lpr+s ++r+rnrCv+t rprgv r+++L+Ri+FR+lA++g+l G+++a
#PP 5789*********************************************9876
#SEQ EIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRA
#CS ---S-S-T.TSSGGG---TTT--SSTT---SSS-HHHHHHHHHH...HT-B-X
3j6v_O 54 134 52 134 PF00312.17 Ribosomal_S15 Domain 3 83 83 56.4 1.8e-15 1 No_clan
#HMM kekkiseilkeekdtgsvevqvalLterivrLrkHleehkkDysskrgLiklvskrkrLlaYlkkkntakYeelieklglr
#MATCH ke+ +s++ +++kdt s+e q+ Lt +i+ ++H+++h+kD++ kr L+ kr+++l+ l+k+n +e++ ++lg++
#PP 6788999************************************************************************96
#SEQ KEQLMSKVVENPKDTSSLEAQIVALTVKIRSYEEHMQKHQKDKAHKRYLLMSIDKRQKMLKNLRKTNYPVFEKTCKELGIE
#CS HHHHHHHT--S-----SHHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHT-X
3j6v_P 10 69 9 69 PF00886.14 Ribosomal_S16 Family 3 62 62 79.2 1.3e-22 1 No_clan
#HMM GrkkrPfYriVvadsrkpRdgrpieklGtYdPiprkkeakrvelneerikyWlkkGAqps
#MATCH G +rPfYriV+a+++ pRdgr++e+lG YdP+p+++ +k v ln +ri++W++ GA++s
#PP 999*********************************999******************987
#SEQ GCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCGAHLS
#CS EETTEEEEEEEEEE-XXXXXX--SEEEEEEETTTTE....EEEE-HHHHHHHHHTT-EEE
3j6v_Q 15 75 15 84 PF00366.15 Ribosomal_S17 Domain 1 62 69 34.5 1.5e-08 1 CL0021
#HMM GvVvsdkmekTvvvrverlvkhpkYkkyvkrkkkyqaHdeenerkvGDvVkieecRPlSktk
#MATCH G+V+ + m+kT vrv+rlv p ky ++k y aHd +++ vGD+V + + P+ +tk
#PP 99***********************************************966.455766666
#SEQ GKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLL-KALPVPRTK
#CS EEECEEESTTECEEEEEECEEETTTCCEEEECEEEEEE-TTTTSSTTEEEEEEEESESSSSE
3j6v_R 39 90 37 90 PF01084.15 Ribosomal_S18 Family 3 54 54 59.7 1.8e-16 1 No_clan
#HMM kkekidYkdvelLskFiserGkIlprriTglcakqQrklakaIKrARilaLl
#MATCH k+k +Y dv lLs+Fi ++G +lpr iTglc++++rk+++++K A++++Ll
#PP 57899**********************************************8
#SEQ LKHKYSYEDVLLLSQFIRPHGGMLPRSITGLCQEEHRKIEECVKMAHRAGLL
#CS SEETTSTTTHHHHGTGBTTSSSBSTHHHHTSTHHHHHHHHHHHHHHHHTTSS
3j6v_U 12 64 10 65 PF01165.15 Ribosomal_S21 Family 3 56 57 61.5 3.6e-17 1 No_clan
#HMM VkvkenenierALrrfkrkvekagilrelrkrrfyekpsekRkrkrkearrrrr
#MATCH V v+e++ +e A+r ++r+++++g+++++++rr+yekp+ +R r+++e +rr++
#PP 7788888.********************************************98
#SEQ VMVQEGN-VEGAYRTLNRILTMDGLIEDIKRRRYYEKPCRRRQRESYETCRRIY
3j6v_V 3 124 1 124 PF14955.1 MRP-S24 Family 13 136 136 182.0 4.3e-54 1 No_clan
#HMM krdkpltYemakkPheiahrksWnslntsnleeekrkaetvveDefiRrfikgtfhellaseiiikRrhnliriaglllrklsarklyfliGyteelLsillkcpvklelqtvedkkdvvykyi
#MATCH k++kp+tYe+a++Ph+iahrk+W+sl+t nl++e+++ae++veD+f+R+f+ gtf+ +la+++i+kRr+n ++i++l+lr+l a+k+yfl+Gy+e+lLs+++kcpv+l+lqtv++k vvykyi
#PP 789*****************************************************************************************************************..*****8
#SEQ KGNKPVTYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTVEDVFLRKFMLGTFPGCLADQLILKRRANQVEICALVLRQLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSK--VVYKYI