Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1d2i.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 19:16:58 2013 Дата индексирования: Fri Feb 28 20:39:11 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 19:16:56 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1d2i.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1d2i_A 9 165 9 166 PF09195.6 Endonuc-BglII Domain 1 163 164 83.7 9e-24 1 CL0236
#HMM naeailasdkpgekkeieeiladfrltlaelkksggkesevtqrl.........kselqakgWeneirksldivvdgieeeqslshkiDfvKnrvalevefgnkdsfyrDllkfqllhassaId....vGilitptkslakvadkfgsgtthyekllkelrrgk..gnidvPilliGi
#MATCH +a++il+ + +keiee+l++ ++k+s+++++ ++ ++ k+el+ k+W+n+i + ++ + l+++iDf K++ +ev+f+n++++++++++++l+h+s+ Id v+i+it+++ a +++++ye+++++l+++ +++dvPi+l+G+
#PP 67888888...**********9864....699999999999999999999999************9955........44555589*************************************977777*******985555......*************665559***********8
#SEQ HADEILNP---QLWKEIEETLLKPL----HVKASDQASKVGSLIFdpvgtnqyiKDELVPKHWKNNIPI--------PKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKSNDIDeegkVAIIITKGHFPAS------NSSLYYEQAQNQLNSLAeyNVFDVPIRLVGL
#CS THHHHCHHH-HHHHHHHHHHHHH--CGGGEEEE--SCCCTT-EEE.........HHHHHHCT-EEEEEEEE....E-S-HHHHCCCEEEEEETTEEEEEE-SBTHHHHHHHHCHHHHHHTTS-S....EEEEEEE-CCCHT...TSSTTB--HHHHHHHHCCHC..T-SSS-EEEEEE
1d2i_B 9 165 9 166 PF09195.6 Endonuc-BglII Domain 1 163 164 83.9 8.3e-24 1 CL0236
#HMM naeailasdkpgekkeieeiladfrltlaelkksggkesevtqrl.........kselqakgWeneirksldivvdgieeeqslshkiDfvKnrvalevefgnkdsfyrDllkfqllhassaId....vGilitptkslakvadkfgsgtthyekllkelrrgk..gnidvPilliGi
#MATCH +a++il+ + +keiee+l++ ++k+s+++++ ++ ++ k+el+ k+W+n+i + ++ + l+++iDf K++ +ev+f+n++++++++++++l+h+s+ Id v+i+it+++ a +++++ye+++++l+++ +++dvPi+l+G+
#PP 67888888...**********9864....699999999999999999999999************9955........44555589*************************************977777*******985555......*************665559***********8
#SEQ HADEILNP---QLWKEIEETLLKPL----HVKASDQASKVGSLIFdpvgtnqyiKDELVPKHWKNNIPI--------PKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKSNDIDeegkVAIIITKGHFPAS------NSSLYYEQAQNQLNSLAeyNVFDVPIRLVGL
#CS THHHHCHHH-HHHHHHHHHHHHH--CGGGEEEE--SCCCTT-EEE.........HHHHHHCT-EEEEEEEE....E-S-HHHHCCCEEEEEETTEEEEEE-SBTHHHHHHHHCHHHHHHTTS-S....EEEEEEE-CCCHT...TSSTTB--HHHHHHHHCCHC..T-SSS-EEEEEE