Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1dc1.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 19:17:27 2013 Дата индексирования: Fri Feb 28 20:39:18 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 19:17:25 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1dc1.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1dc1_A 1 310 1 310 PF09194.5 Endonuc-BsobI Domain 1 316 316 566.2 1.4e-170 1 CL0236
#HMM kpyenhlkssddlkttyeevraGfvalaleknrratpyveearalkiaaskaktpkdllklkdiqaalltasGisdkakkylqeedkveaieeliknflepaGeefveelvyrfllirGdtlGGsmrnigGvlaqrkltraiisalkianisykwldskdkk...wldkeeddselelllrGlswelegkertliynvtvplvkknvdlcllnceseelekqkvlqsaelyialGelkGGidpaGadehwktartalarireafskkskkpktffiGaaiekkmaeeiydqlesgkltnaanltkdeqvaslsrwlitl
#MATCH kp+enhlks+ddlkttyee+raGf+a+alekn+r+tpy+e+aralk+aas+aktpkdll+l+diq+all+asGisdkakk+l+e+dk+e+i++li+nflepaGeef++el++r+ll++Gd+lGG+mrni+G+laq+kltraiisal+iani+ykwlds+dkk w+dk+edd+ele++++G+sw+++gk+rtl+yn+tv lvkknvd+cl+nce++ ++e+y++lGelkGGidpaGadehwkta+tal+rir++fs+k+++pkt+fiGaaie++maeei+dql+sg+ltn+anltk+eqv+sl+rw+i++
#PP 7****************************************************************************************************************************************************************9999*************************************************984.........699***************************************************************************************986
#SEQ KPFENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDIANIPYKWLDSRDKKytnWMDKPEDDYELETFAKGISWTINGKHRTLMYNITVSLVKKNVDICLFNCEPQ---------QPEKYLLLGELKGGIDPAGADEHWKTANTALTRIRNKFSEKGLSPKTIFIGAAIEHSMAEEIWDQLQSGSLTNSANLTKTEQVGSLCRWIINI
#CS -GGGGT-SSGGGCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSGGGGGG-GGGHHHHHHHTT--HHHHTT--HHHHHHHHHHHHHHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEEETTSTT...EEE--SS-TTGGGGEEEEEEEETTEEEEEEEEEEETTTTEEEEEEEEES--XXXXXXXXX--GGGEEEEEEEE----HHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEEESS--HHHHHHHHHHHHTTSS-EEEETT-HHHHHHHHHHHHT-
1dc1_B 2 311 2 311 PF09194.5 Endonuc-BsobI Domain 1 316 316 566.1 1.5e-170 1 CL0236
#HMM kpyenhlkssddlkttyeevraGfvalaleknrratpyveearalkiaaskaktpkdllklkdiqaalltasGisdkakkylqeedkveaieeliknflepaGeefveelvyrfllirGdtlGGsmrnigGvlaqrkltraiisalkianisykwldskdkk...wldkeeddselelllrGlswelegkertliynvtvplvkknvdlcllnceseelekqkvlqsaelyialGelkGGidpaGadehwktartalarireafskkskkpktffiGaaiekkmaeeiydqlesgkltnaanltkdeqvaslsrwlitl
#MATCH kp+enhlks+ddlkttyee+raGf+a+alekn+r+tpy+e+aralk+aas+aktpkdll+l+diq+all+asGisdkakk+l+e+dk+e+i++li+nflepaGeef++el++r+ll++Gd+lGG+mrni+G+laq+kltraiisal+iani+ykwlds+dkk w+dk+edd+ele++++G+sw+++gk+rtl+yn+tv lvkknvd+cl+nce++ ++e+y++lGelkGGidpaGadehwkta+tal+rir++fs+k+++pkt+fiGaaie++maeei+dql+sg+ltn+anltk+eqv+sl+rw+i++
#PP 7****************************************************************************************************************************************************************9999*************************************************984.........699***************************************************************************************986
#SEQ KPFENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDIANIPYKWLDSRDKKytnWMDKPEDDYELETFAKGISWTINGKHRTLMYNITVSLVKKNVDICLFNCEPQ---------QPEKYLLLGELKGGIDPAGADEHWKTANTALTRIRNKFSEKGLSPKTIFIGAAIEHSMAEEIWDQLQSGSLTNSANLTKTEQVGSLCRWIINI
#CS -GGGGT-SSGGGCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSGGGGGG-GGGHHHHHHHTT--HHHHTT--HHHHHHHHHHHHHHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEEETTSTT...EEE--SS-TTGGGGEEEEEEEETTEEEEEEEEEEETTTTEEEEEEEEES--XXXXXXXXX--GGGEEEEEEEE----HHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEEESS--HHHHHHHHHHHHTTSS-EEEETT-HHHHHHHHHHHHT-