Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1eiy.pdb1.pdb.hmm.txt Дата изменения: Mon Oct 12 19:08:58 2015 Дата индексирования: Mon Apr 11 08:05:57 2016 Кодировка:

# pfam_scan.pl, run at Mon Oct 12 19:08:50 2015
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1eiy.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1eiy_A 5 77 5 77 PF02912.13 Phe_tRNA-synt_N Domain 1 73 73 74.9 2.9e-21 1 CL0298
#HMM aaaedlkaLeeiRvkyLGkkGeltellkkLgklsaeeRkkvGkliNelkekveealeekkkeLeeaelearLa
#MATCH ++a dl++L++++++yLGkkG lt+ +k+L +l+ eeR+k G+++N++k ++e+ale+++k+Leea+l+++L+
#PP 689*******************************************************************996
#SEQ QNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALE
#CS XXXXX-HHHHHHHHHHHHHHHHTTSTTS-TTTGGG--TTHHHHHHHHHHHHHTHHHHHHHHHHHTTHHHHHHH
1eiy_A 81 341 80 341 PF01409.15 tRNA-synt_2d Domain 2 247 247 322.7 1.1e-96 1 CL0040
#HMM ldvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnipqdhpaRdmqdtFylkkpeka........eekkllLRthttavqartlaekkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleav.......gid...eevsgfafGlGveRlamlkygieDiRelyendlrfleqf
#MATCH +dv+lpg+++ +g+lhp+t + +e+ eif++lg+++vegpevesef+nfdaLnip++hpaRdm+dtF+l+ + +e +llLRtht+++q+r++ +++pp++i+++grvfR +++Dath+a+Fhq+eglvv+e++ +a+lkg + e++++lfg + kvrf+p yfpf+eP+a+++v++ ++++kwlEl+gaGmv+p+v++av g++ + v+gfafGlGveRlaml+ygi+DiR+++ l+fleqf
#PP 8********************************************************************55444499*****9999****************.************************************************************************************..***********************9999999887777899*********************************997
#SEQ VDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRlegplgeeVEGRLLLRTHTSPMQVRYM-VAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWW--PEGGKWLELGGAGMVHPKVFQAVdayrerlGLPpayRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF
#CS .-TSSCTTTTS-SB-SCCHHHCSCCCCCCCCCCCCE-STTSCEEHSCCTSSSSSTTCSCCHCCSSSECTTTT-E-........EEECEEE-SSTHHHHHHHHTTTS-SSEEEEEEEEEE--ST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHCCHTTTEEEEEETT-BTTBETTTEEEEEEESTCTCCEEEEEEEEEB-HHHHHHT.......T-....TTSEEEEEEEEHHHHHHHHHT-SSCHHHHST.HCCCCGG
1eiy_B 45 139 45 145 PF01588.15 tRNA_bind Domain 1 90 95 27.2 2.5e-06 1 CL0021
#HMM lrvGkvleaekhpnadkLlvlkvdvGeeerqivsgaknvyapeelvaklvvvvanlkpk...........klrGveSeGMilsaee..leeeevellelpeev
#MATCH +++++vlea ++p++ +L l +d G + ++vsga+n ++ +++v++a+++ + ++Gv+S GM ls e e +lle+pe++
#PP 689***********9.9*******995.68***********......8899999888888889998********************77566667888888764
#SEQ VVFARVLEAHPIPGT-RLKRLVLDAGR-TVEVVSGAENARK------GIGVALALPGTElpglgqkvgerVIQGVRSFGMALSPRElgVGEYGGGLLEFPEDA
#CS EEEEEEEEEEEETTSSSEEEEEEEESSSEEEEEESCTTTSTHHHTTTCEEEEETSSESE...........EETTEEESSEE-EEEC..CTSSCEEEEEESTTS
1eiy_B 211 385 209 385 PF03483.12 B3_4 Domain 3 174 174 204.1 1e-60 1 CL0383
#HMM pryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkereldeedlvia....dsekpvslagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselcg
#MATCH p+++ + g++ +apsp+w+qr L +ag+rpinnvVD+tNyvmle +qP+hafDl + + i vr+a+ege+l tldg er+l++edlvia ++ p+ lagvmgg+es+v edT+ + le+a+fdpvsirktarr+glr+eas+rfergvdp + a +ra++ll+ l+g
#PP 667777777888.8*********************************************99*******************************5554467799*********************************************************************99886
#SEQ PHFTLGYAFGLR-VAPSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDLVIAgwrgEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAG
#CS SEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-TTSEEEE....TEEEEEEETTTEEBTTTC--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TT-HHHHHHHHHHHHHHHS-
1eiy_B 402 469 401 469 PF03484.10 B5 Domain 2 70 70 57.4 9e-16 1 No_clan
#HMM kkialdlqkvsrilGielsddeiekiLkrlgfkvekndedslrvtvPsyRsDiqhevDliEEvarlyGy
#MATCH + i ++ ++ +r+lG+++ + e iLkrlg++ve ++ ++rvt+Ps+R D+ e+Dl+EEvar+ Gy
#PP 568899******************************.8******************************9
#SEQ EAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEG-EGPTYRVTPPSHRLDLRLEEDLVEEVARIQGY
#CS EEEEEEHHHHHHHHT----HHHHHHHHHHTT-EEEE.ETTEEEEEE-TT-----SHHHHHHHHHHHHT-
1eiy_B 539 665 485 671 PF01409.15 tRNA-synt_2d Domain 78 207 247 28.1 1e-06 1 CL0040
#HMM ekkllLRthttavqartlaekkk..ppik..iisigrvfRrdavDathlaeFhqvegl...vvdenvs.ladlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleavgi
#MATCH +k LRth + +r+l+e+ + p + ++ +grvfR+ + thla eg+ +++e +s lkg le+++ +l g +r++ + fpf P++ v + + E++ G ++pe+ +++++
#PP 46789*************4443333454422899******877..899988776666633466777763456899999999999.876..*******************99......334888889999999998876
#SEQ PEKAALRTHLFPGLVRVLKENLDldRPERalLFEVGRVFRERE--ETHLAGLLFGEGVglpWAKERLSgYFLLKGYLEALFARL-GLA--FRVEAQAFPFLHPGVSGRVLV------EGEEVGFLGALHPEIAQELEL
#CS EECEEE-SSTHHHHHHHHTTTS-..SSEE..EEEEEEEE--ST-SSSB-SEEEEEEEE...EEETT--.HHHHHHHHHHHHHCCHTTTEEEEEETT-BTTBETTTEEEEEEESTCTCCEEEEEEEEEB-HHHHHHTT-
1eiy_B 688 775 688 780 PF03147.9 FDX-ACB Domain 1 88 94 86.1 1.3e-24 1 No_clan
#HMM SkfPaverDlafvvdeeveaaeildvvreaagellesvelfDvYrgkklaegkkSlalrltlqskektLtdeevnaliekivealeek
#MATCH S++Pa rDla+vv++ +++ e++++vreaag++les+ lfD Y+g+ l+eg+kSla+ l ++++++tL deev+++++++ eal+++
#PP 89***********************************************************************************875
#SEQ SRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRTLRDEEVEEAVSRVAEALRAR
#CS -SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTSGSSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT
1eiy_E 5 77 5 77 PF02912.13 Phe_tRNA-synt_N Domain 1 73 73 74.9 2.9e-21 1 CL0298
#HMM aaaedlkaLeeiRvkyLGkkGeltellkkLgklsaeeRkkvGkliNelkekveealeekkkeLeeaelearLa
#MATCH ++a dl++L++++++yLGkkG lt+ +k+L +l+ eeR+k G+++N++k ++e+ale+++k+Leea+l+++L+
#PP 689*******************************************************************996
#SEQ QNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALE
#CS XXXXX-HHHHHHHHHHHHHHHHTTSTTS-TTTGGG--TTHHHHHHHHHHHHHTHHHHHHHHHHHTTHHHHHHH
1eiy_E 81 341 80 341 PF01409.15 tRNA-synt_2d Domain 2 247 247 322.7 1.1e-96 1 CL0040
#HMM ldvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnipqdhpaRdmqdtFylkkpeka........eekkllLRthttavqartlaekkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleav.......gid...eevsgfafGlGveRlamlkygieDiRelyendlrfleqf
#MATCH +dv+lpg+++ +g+lhp+t + +e+ eif++lg+++vegpevesef+nfdaLnip++hpaRdm+dtF+l+ + +e +llLRtht+++q+r++ +++pp++i+++grvfR +++Dath+a+Fhq+eglvv+e++ +a+lkg + e++++lfg + kvrf+p yfpf+eP+a+++v++ ++++kwlEl+gaGmv+p+v++av g++ + v+gfafGlGveRlaml+ygi+DiR+++ l+fleqf
#PP 8********************************************************************55444499*****9999****************.************************************************************************************..***********************9999999887777899*********************************997
#SEQ VDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRlegplgeeVEGRLLLRTHTSPMQVRYM-VAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWW--PEGGKWLELGGAGMVHPKVFQAVdayrerlGLPpayRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF
#CS .-TSSCTTTTS-SB-SCCHHHCSCCCCCCCCCCCCE-STTSCEEHSCCTSSSSSTTCSCCHCCSSSECTTTT-E-........EEECEEE-SSTHHHHHHHHTTTS-SSEEEEEEEEEE--ST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHCCHTTTEEEEEETT-BTTBETTTEEEEEEESTCTCCEEEEEEEEEB-HHHHHHT.......T-....TTSEEEEEEEEHHHHHHHHHT-SSCHHHHST.HCCCCGG
1eiy_F 45 139 45 145 PF01588.15 tRNA_bind Domain 1 90 95 27.2 2.5e-06 1 CL0021
#HMM lrvGkvleaekhpnadkLlvlkvdvGeeerqivsgaknvyapeelvaklvvvvanlkpk...........klrGveSeGMilsaee..leeeevellelpeev
#MATCH +++++vlea ++p++ +L l +d G + ++vsga+n ++ +++v++a+++ + ++Gv+S GM ls e e +lle+pe++
#PP 689***********9.9*******995.68***********......8899999888888889998********************77566667888888764
#SEQ VVFARVLEAHPIPGT-RLKRLVLDAGR-TVEVVSGAENARK------GIGVALALPGTElpglgqkvgerVIQGVRSFGMALSPRElgVGEYGGGLLEFPEDA
#CS EEEEEEEEEEEETTSSSEEEEEEEESSSEEEEEESCTTTSTHHHTTTCEEEEETSSESE...........EETTEEESSEE-EEEC..CTSSCEEEEEESTTS
1eiy_F 211 385 209 385 PF03483.12 B3_4 Domain 3 174 174 204.1 1e-60 1 CL0383
#HMM pryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkereldeedlvia....dsekpvslagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselcg
#MATCH p+++ + g++ +apsp+w+qr L +ag+rpinnvVD+tNyvmle +qP+hafDl + + i vr+a+ege+l tldg er+l++edlvia ++ p+ lagvmgg+es+v edT+ + le+a+fdpvsirktarr+glr+eas+rfergvdp + a +ra++ll+ l+g
#PP 667777777888.8*********************************************99*******************************5554467799*********************************************************************99886
#SEQ PHFTLGYAFGLR-VAPSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDLVIAgwrgEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAG
#CS SEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-TTSEEEE....TEEEEEEETTTEEBTTTC--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TT-HHHHHHHHHHHHHHHS-
1eiy_F 402 469 401 469 PF03484.10 B5 Domain 2 70 70 57.4 9e-16 1 No_clan
#HMM kkialdlqkvsrilGielsddeiekiLkrlgfkvekndedslrvtvPsyRsDiqhevDliEEvarlyGy
#MATCH + i ++ ++ +r+lG+++ + e iLkrlg++ve ++ ++rvt+Ps+R D+ e+Dl+EEvar+ Gy
#PP 568899******************************.8******************************9
#SEQ EAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEG-EGPTYRVTPPSHRLDLRLEEDLVEEVARIQGY
#CS EEEEEEHHHHHHHHT----HHHHHHHHHHTT-EEEE.ETTEEEEEE-TT-----SHHHHHHHHHHHHT-
1eiy_F 539 665 485 671 PF01409.15 tRNA-synt_2d Domain 78 207 247 28.1 1e-06 1 CL0040
#HMM ekkllLRthttavqartlaekkk..ppik..iisigrvfRrdavDathlaeFhqvegl...vvdenvs.ladlkgvleeflkklfgaevkvrfrpsyfpftePsaevdvylvvekkkkwlEllgaGmvrpevleavgi
#MATCH +k LRth + +r+l+e+ + p + ++ +grvfR+ + thla eg+ +++e +s lkg le+++ +l g +r++ + fpf P++ v + + E++ G ++pe+ +++++
#PP 46789*************4443333454422899******877..899988776666633466777763456899999999999.876..*******************99......334888889999999998876
#SEQ PEKAALRTHLFPGLVRVLKENLDldRPERalLFEVGRVFRERE--ETHLAGLLFGEGVglpWAKERLSgYFLLKGYLEALFARL-GLA--FRVEAQAFPFLHPGVSGRVLV------EGEEVGFLGALHPEIAQELEL
#CS EECEEE-SSTHHHHHHHHTTTS-..SSEE..EEEEEEEE--ST-SSSB-SEEEEEEEE...EEETT--.HHHHHHHHHHHHHCCHTTTEEEEEETT-BTTBETTTEEEEEEESTCTCCEEEEEEEEEB-HHHHHHTT-
1eiy_F 688 775 688 780 PF03147.9 FDX-ACB Domain 1 88 94 86.1 1.3e-24 1 No_clan
#HMM SkfPaverDlafvvdeeveaaeildvvreaagellesvelfDvYrgkklaegkkSlalrltlqskektLtdeevnaliekivealeek
#MATCH S++Pa rDla+vv++ +++ e++++vreaag++les+ lfD Y+g+ l+eg+kSla+ l ++++++tL deev+++++++ eal+++
#PP 89***********************************************************************************875
#SEQ SRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRTLRDEEVEEAVSRVAEALRAR
#CS -SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTSGSSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT