Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1zbh.pdb1.pdb.hmm.txt Дата изменения: Thu May 16 20:58:57 2013 Дата индексирования: Fri Feb 28 21:06:54 2014 Кодировка:

# pfam_scan.pl, run at Thu May 16 20:58:53 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1zbh.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1zbh_A 18 50 17 51 PF02037.22 SAP Family 2 34 35 30.3 2e-07 1 CL0306
#HMM skltVaeLKaeLkkrGLptsGkKaeLieRLkeh
#MATCH + ++ +eL+a+L+++ L+t G K +L +RLk++
#PP 78*****************************99
#SEQ NRMSKEELRAKLSEFKLETRGVKDVLKKRLKNY
#CS TT--HHHHHHHHHHTT--TTS-HHHHHHHHHHH
1zbh_A 73 246 72 247 PF00929.19 RNase_T Family 2 163 164 81.9 6.1e-23 1 CL0219
#HMM viDcEttglda....ekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklemp....krndvldtlildkktlkelkr.....tslkklaekllleeiqraHrAldDaratael
#MATCH +iD+E t+ + +eiie++ v ++++ ei+ tf++yv+pe + +++d+++++tgitq+++d a++f++vl+++ +l++ lk+l ++ + +++ + +d+ +fl+ +++ k +++ + +i+ +k++ ++ + t+l + ekl+++ ++r +ldD +++a +
#PP 79*******999998789******************************************************************.888888779*******************************************************************88999999999876
#SEQ IIDFEATCEEGnppeFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK-LKELGTKYKYSLLTDGSWDMSKFLNIQCQlsrlKYPPFAKKWINIRKSYGNFYKvprsqTKLTIMLEKLGMDYDGRPNCGLDDSKNIARI
#CS EEEEEESSSTT....TTSTEEEEEEEEEETTECEEEEEEEEEEEHSSHCSCEHHHHHHHHHCHHHHCTCEEHHHHHHHHHHHHHHTTEEEETTTCCEEESSHHHHHHHHHHHHH....HHHGGCECCECHHHHHHHHHC.....HHHHHHHHHTTCHSTSHTSCHHHHHHHHHHH
1zbh_B 9 182 8 183 PF00929.19 RNase_T Family 2 163 164 82.9 2.8e-23 1 CL0219
#HMM viDcEttglda....ekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklemp....krndvldtlildkktlkelkr.....tslkklaekllleeiqraHrAldDaratael
#MATCH +iD+E t+ + +eiie++ v ++++ ei+ tf++yv+pe + +++d+++++tgitq+++d a++f++vl+++ +l++ lk+l ++ + +++ + +d+ +fl+ +++ k +++ + +i+ +k++ ++ + t+l + ekl+++ ++r +ldD +++a +
#PP 79*******999998789******************************************************************.888888779*******************************************************************88999999999876
#SEQ IIDFEATCEEGnppeFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK-LKELGTKYKYSLLTDGSWDMSKFLNIQCQlsrlKYPPFAKKWINIRKSYGNFYKvprsqTKLTIMLEKLGMDYDGRPNCGLDDSKNIARI
#CS EEEEEESSSTT....TTSTEEEEEEEEEETTECEEEEEEEEEEEHSSHCSCEHHHHHHHHHCHHHHCTCEEHHHHHHHHHHHHHHTTEEEETTTCCEEESSHHHHHHHHHHHHH....HHHGGCECCECHHHHHHHHHC.....HHHHHHHHHTTCHSTSHTSCHHHHHHHHHHH
1zbh_C 9 182 8 183 PF00929.19 RNase_T Family 2 163 164 82.9 2.8e-23 1 CL0219
#HMM viDcEttglda....ekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklemp....krndvldtlildkktlkelkr.....tslkklaekllleeiqraHrAldDaratael
#MATCH +iD+E t+ + +eiie++ v ++++ ei+ tf++yv+pe + +++d+++++tgitq+++d a++f++vl+++ +l++ lk+l ++ + +++ + +d+ +fl+ +++ k +++ + +i+ +k++ ++ + t+l + ekl+++ ++r +ldD +++a +
#PP 79*******999998789******************************************************************.888888779*******************************************************************88999999999876
#SEQ IIDFEATCEEGnppeFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK-LKELGTKYKYSLLTDGSWDMSKFLNIQCQlsrlKYPPFAKKWINIRKSYGNFYKvprsqTKLTIMLEKLGMDYDGRPNCGLDDSKNIARI
#CS EEEEEESSSTT....TTSTEEEEEEEEEETTECEEEEEEEEEEEHSSHCSCEHHHHHHHHHCHHHHCTCEEHHHHHHHHHHHHHHTTEEEETTTCCEEESSHHHHHHHHHHHHH....HHHGGCECCECHHHHHHHHHC.....HHHHHHHHHTTCHSTSHTSCHHHHHHHHHHH
1zbh_D 18 50 17 51 PF02037.22 SAP Family 2 34 35 30.3 2e-07 1 CL0306
#HMM skltVaeLKaeLkkrGLptsGkKaeLieRLkeh
#MATCH + ++ +eL+a+L+++ L+t G K +L +RLk++
#PP 78*****************************99
#SEQ NRMSKEELRAKLSEFKLETRGVKDVLKKRLKNY
#CS TT--HHHHHHHHHHTT--TTS-HHHHHHHHHHH
1zbh_D 73 246 72 247 PF00929.19 RNase_T Family 2 163 164 81.9 6.1e-23 1 CL0219
#HMM viDcEttglda....ekdeiieiaavsivggeeeigetfdtyvkpeedakitdeateftgitqedldkapsfeevleelkellrklkllvahnaafdvgfllqddlrflklemp....krndvldtlildkktlkelkr.....tslkklaekllleeiqraHrAldDaratael
#MATCH +iD+E t+ + +eiie++ v ++++ ei+ tf++yv+pe + +++d+++++tgitq+++d a++f++vl+++ +l++ lk+l ++ + +++ + +d+ +fl+ +++ k +++ + +i+ +k++ ++ + t+l + ekl+++ ++r +ldD +++a +
#PP 79*******999998789******************************************************************.888888779*******************************************************************88999999999876
#SEQ IIDFEATCEEGnppeFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK-LKELGTKYKYSLLTDGSWDMSKFLNIQCQlsrlKYPPFAKKWINIRKSYGNFYKvprsqTKLTIMLEKLGMDYDGRPNCGLDDSKNIARI
#CS EEEEEESSSTT....TTSTEEEEEEEEEETTECEEEEEEEEEEEHSSHCSCEHHHHHHHHHCHHHHCTCEEHHHHHHHHHHHHHHTTEEEETTTCCEEESSHHHHHHHHHHHHH....HHHGGCECCECHHHHHHHHHC.....HHHHHHHHHTTCHSTSHTSCHHHHHHHHHHH