Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3mur.std.txt Дата изменения: Wed May 23 18:45:16 2012 Дата индексирования: Tue Oct 2 12:32:42 2012 Кодировка:

REM -------------------------------------------------------------------- 3MUR
REM 3MUR
REM STRIDE: Knowledge-based secondary structure assignment 3MUR
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3MUR
REM 3MUR
REM Residue accessible surface area calculation 3MUR
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3MUR
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3MUR
REM 3MUR
REM ------------------------ General information ----------------------- 3MUR
REM 3MUR
HDR RNA BINDING PROTEIN/RNA 03-MAY-10 3MUR 3MUR
CMP MOL_ID: 1; 3MUR
CMP MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; 3MUR
CMP CHAIN: P; 3MUR
CMP FRAGMENT: UNP RESIDUES 1-98; 3MUR
CMP SYNONYM: U1 SNRNP A, U1-A, U1A; 3MUR
CMP ENGINEERED: YES; 3MUR
CMP MUTATION: YES; 3MUR
CMP MOL_ID: 2; 3MUR
CMP MOLECULE: C92U MUTANT C-DI-GMP RIBOSWITCH; 3MUR
CMP CHAIN: R; 3MUR
CMP ENGINEERED: YES 3MUR
SRC MOL_ID: 1; 3MUR
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3MUR
SRC ORGANISM_COMMON: HUMAN; 3MUR
SRC ORGANISM_TAXID: 9606; 3MUR
SRC GENE: SNRPA; 3MUR
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3MUR
SRC EXPRESSION_SYSTEM_TAXID: 511693; 3MUR
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 3MUR
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3MUR
SRC EXPRESSION_SYSTEM_PLASMID: PET11; 3MUR
SRC MOL_ID: 2; 3MUR
SRC SYNTHETIC: YES; 3MUR
SRC OTHER_DETAILS: IN VITRO TRANSCRIBED FROM LINEAR DNA 3MUR
AUT S.A.STROBEL,K.D.SMITH 3MUR
REM 3MUR
REM -------------------- Secondary structure summary ------------------- 3MUR
REM 3MUR
CHN /data/npidb/pdb/pdb_new/all/pdb3mur.pdb P 3MUR
REM 3MUR
REM . . . . . 3MUR
SEQ 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAF 50 3MUR
STR TTEEEEE TTTT HHHHHHHHHHHHHTTT EEEEEE TTTTTTTEE 3MUR
REM 3MUR
REM . . . . 3MUR
SEQ 51 VIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 90 3MUR
STR EEETTHHHHHHHHHHHTTEEETTEEEEEEETTTTTTTTT 3MUR
REM 3MUR
REM 3MUR
REM 3MUR
LOC AlphaHelix LYS 23 P SER 35 P 3MUR
LOC AlphaHelix VAL 62 P MET 72 P 3MUR
LOC Strand THR 11 P ASN 15 P 3MUR
LOC Strand ILE 40 P VAL 45 P 3MUR
LOC Strand ALA 55 P PHE 59 P 3MUR
LOC Strand PHE 75 P PHE 77 P 3MUR
LOC Strand LYS 80 P TYR 86 P 3MUR
LOC TurnVIII ASN 9 P ILE 12 P 3MUR
LOC TurnI ASN 18 P ILE 21 P 3MUR
LOC TurnI SER 35 P GLY 38 P 3MUR
LOC TurnI SER 48 P MET 51 P 3MUR
LOC TurnI LEU 49 P ARG 52 P 3MUR
LOC TurnII MET 51 P GLN 54 P 3MUR
LOC TurnVIII PHE 59 P VAL 62 P 3MUR
LOC TurnII MET 72 P PHE 75 P 3MUR
LOC TurnIV PRO 76 P ASP 79 P 3MUR
LOC TurnI' PHE 77 P LYS 80 P 3MUR
LOC TurnVIII ALA 87 P ASP 90 P 3MUR
LOC TurnI SER 91 P ILE 94 P 3MUR
LOC TurnIV ASP 92 P ALA 95 P 3MUR
REM 3MUR
REM --------------- Detailed secondary structure assignment------------- 3MUR
REM 3MUR
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3MUR
ASG ARG P 7 1 C Coil 360.00 25.97 248.5 3MUR
ASG PRO P 8 2 C Coil -77.69 156.16 84.8 3MUR
ASG ASN P 9 3 T Turn -148.47 157.54 5.9 3MUR
ASG HIS P 10 4 T Turn -62.84 -30.13 44.9 3MUR
ASG THR P 11 5 E Strand -104.94 145.54 0.8 3MUR
ASG ILE P 12 6 E Strand -119.25 140.41 0.0 3MUR
ASG TYR P 13 7 E Strand -104.78 115.54 45.1 3MUR
ASG ILE P 14 8 E Strand -105.46 137.32 0.0 3MUR
ASG ASN P 15 9 E Strand -131.64 -171.50 50.3 3MUR
ASG ASN P 16 10 C Coil 56.77 56.35 62.8 3MUR
ASG LEU P 17 11 C Coil -117.53 151.23 2.4 3MUR
ASG ASN P 18 12 T Turn -57.82 119.34 53.9 3MUR
ASG GLU P 19 13 T Turn -83.30 -18.23 94.0 3MUR
ASG LYS P 20 14 T Turn -90.05 14.72 182.6 3MUR
ASG ILE P 21 15 T Turn -88.80 125.18 24.1 3MUR
ASG LYS P 22 16 C Coil -59.94 135.23 149.3 3MUR
ASG LYS P 23 17 H AlphaHelix -43.98 -53.57 105.9 3MUR
ASG ASP P 24 18 H AlphaHelix -49.24 -50.98 124.6 3MUR
ASG GLU P 25 19 H AlphaHelix -71.06 -44.93 110.1 3MUR
ASG LEU P 26 20 H AlphaHelix -53.28 -49.11 8.0 3MUR
ASG LYS P 27 21 H AlphaHelix -48.61 -59.85 64.5 3MUR
ASG LYS P 28 22 H AlphaHelix -48.85 -44.82 150.3 3MUR
ASG SER P 29 23 H AlphaHelix -58.97 -36.58 22.5 3MUR
ASG LEU P 30 24 H AlphaHelix -79.91 -44.66 0.0 3MUR
ASG HIS P 31 25 H AlphaHelix -53.85 -42.48 89.4 3MUR
ASG ALA P 32 26 H AlphaHelix -68.11 -36.73 71.9 3MUR
ASG ILE P 33 27 H AlphaHelix -74.62 -33.24 46.1 3MUR
ASG PHE P 34 28 H AlphaHelix -108.43 -5.66 0.0 3MUR
ASG SER P 35 29 H AlphaHelix -64.86 -23.66 59.4 3MUR
ASG ARG P 36 30 T Turn -70.86 -7.03 178.2 3MUR
ASG PHE P 37 31 T Turn -105.34 -21.65 25.2 3MUR
ASG GLY P 38 32 T Turn 174.00 179.31 22.6 3MUR
ASG GLN P 39 33 C Coil -76.91 103.96 140.0 3MUR
ASG ILE P 40 34 E Strand -71.42 121.21 15.5 3MUR
ASG LEU P 41 35 E Strand -71.96 -45.17 95.3 3MUR
ASG ASP P 42 36 E Strand -166.68 147.74 66.1 3MUR
ASG ILE P 43 37 E Strand -113.97 117.31 5.6 3MUR
ASG LEU P 44 38 E Strand -97.99 119.14 76.9 3MUR
ASG VAL P 45 39 E Strand -138.54 126.61 13.4 3MUR
ASG SER P 46 40 C Coil -129.02 166.23 53.8 3MUR
ASG ARG P 47 41 C Coil -124.83 20.85 108.0 3MUR
ASG SER P 48 42 T Turn -69.14 151.51 58.0 3MUR
ASG LEU P 49 43 T Turn -33.70 -47.25 155.1 3MUR
ASG LYS P 50 44 T Turn -76.53 -42.07 176.0 3MUR
ASG MET P 51 45 T Turn -100.62 9.17 57.7 3MUR
ASG ARG P 52 46 T Turn -79.92 161.61 102.4 3MUR
ASG GLY P 53 47 T Turn 63.90 16.25 11.1 3MUR
ASG GLN P 54 48 T Turn -147.55 153.95 30.8 3MUR
ASG ALA P 55 49 E Strand -146.27 147.90 0.2 3MUR
ASG PHE P 56 50 E Strand -110.19 131.75 58.9 3MUR
ASG VAL P 57 51 E Strand -120.12 115.02 0.0 3MUR
ASG ILE P 58 52 E Strand -95.41 120.98 1.6 3MUR
ASG PHE P 59 53 E Strand -101.23 161.24 0.0 3MUR
ASG LYS P 60 54 T Turn -72.06 -44.82 120.4 3MUR
ASG GLU P 61 55 T Turn -107.49 148.74 98.7 3MUR
ASG VAL P 62 56 H AlphaHelix -74.01 -37.25 50.7 3MUR
ASG SER P 63 57 H AlphaHelix -59.56 -34.63 83.4 3MUR
ASG SER P 64 58 H AlphaHelix -71.01 -32.56 7.2 3MUR
ASG ALA P 65 59 H AlphaHelix -71.91 -37.98 0.0 3MUR
ASG THR P 66 60 H AlphaHelix -62.95 -44.92 29.5 3MUR
ASG ASN P 67 61 H AlphaHelix -56.52 -47.98 89.5 3MUR
ASG ALA P 68 62 H AlphaHelix -64.88 -38.31 0.0 3MUR
ASG LEU P 69 63 H AlphaHelix -63.29 -54.89 27.4 3MUR
ASG ARG P 70 64 H AlphaHelix -75.99 -7.46 200.6 3MUR
ASG SER P 71 65 H AlphaHelix -97.29 -27.02 74.2 3MUR
ASG MET P 72 66 H AlphaHelix -127.22 13.02 16.3 3MUR
ASG GLN P 73 67 T Turn -55.49 117.43 94.7 3MUR
ASG GLY P 74 68 T Turn 89.53 2.34 22.1 3MUR
ASG PHE P 75 69 E Strand -50.36 126.48 82.1 3MUR
ASG PRO P 76 70 E Strand -63.65 104.65 105.9 3MUR
ASG PHE P 77 71 E Strand -130.05 117.27 18.0 3MUR
ASG TYR P 78 72 T Turn 49.52 55.19 82.4 3MUR
ASG ASP P 79 73 T Turn 67.14 4.90 165.6 3MUR
ASG LYS P 80 74 E Strand -132.24 142.41 52.3 3MUR
ASG PRO P 81 75 E Strand -67.18 138.78 46.1 3MUR
ASG MET P 82 76 E Strand -84.19 112.55 0.0 3MUR
ASG ARG P 83 77 E Strand -92.30 96.89 112.8 3MUR
ASG ILE P 84 78 E Strand -98.99 137.98 10.7 3MUR
ASG GLN P 85 79 E Strand -149.10 159.36 103.0 3MUR
ASG TYR P 86 80 E Strand -61.26 159.88 36.5 3MUR
ASG ALA P 87 81 T Turn -83.74 127.79 7.4 3MUR
ASG LYS P 88 82 T Turn -59.44 -46.33 198.8 3MUR
ASG THR P 89 83 T Turn -122.26 146.57 116.5 3MUR
ASG ASP P 90 84 T Turn -64.56 169.71 66.0 3MUR
ASG SER P 91 85 T Turn -78.68 164.28 26.5 3MUR
ASG ASP P 92 86 T Turn -65.61 -23.01 151.8 3MUR
ASG ILE P 93 87 T Turn -81.81 -19.86 83.2 3MUR
ASG ILE P 94 88 T Turn -95.01 -53.20 45.3 3MUR
ASG ALA P 95 89 T Turn -66.37 113.94 62.4 3MUR
ASG LYS P 96 90 C Coil -163.66 360.00 207.4 3MUR