Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/3coq.std.txt Дата изменения: Sun May 20 14:52:31 2012 Дата индексирования: Tue Oct 2 12:22:49 2012 Кодировка:

REM -------------------------------------------------------------------- 3COQ
REM 3COQ
REM STRIDE: Knowledge-based secondary structure assignment 3COQ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3COQ
REM 3COQ
REM Residue accessible surface area calculation 3COQ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3COQ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3COQ
REM 3COQ
REM ------------------------ General information ----------------------- 3COQ
REM 3COQ
HDR TRANSCRIPTION/DNA 29-MAR-08 3COQ 3COQ
CMP MOL_ID: 1; 3COQ
CMP MOLECULE: REGULATORY PROTEIN GAL4; 3COQ
CMP CHAIN: A, B; 3COQ
CMP FRAGMENT: DNA BINDING DOMAIN WITH COMPLETE DIMERIZATION DOMA 3COQ
CMP ENGINEERED: YES; 3COQ
CMP MOL_ID: 2; 3COQ
CMP MOLECULE: DNA (5'- 3COQ
CMP D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*D 3COQ
CMP P*DCP*DGP*DG)-3'); 3COQ
CMP CHAIN: D; 3COQ
CMP ENGINEERED: YES; 3COQ
CMP MOL_ID: 3; 3COQ
CMP MOLECULE: DNA (5'- 3COQ
CMP D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*D 3COQ
CMP P*DCP*DGP*DG)-3'); 3COQ
CMP CHAIN: E; 3COQ
CMP ENGINEERED: YES 3COQ
SRC MOL_ID: 1; 3COQ
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 3COQ
SRC ORGANISM_COMMON: BAKER'S YEAST; 3COQ
SRC GENE: GAL4; 3COQ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3COQ
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3COQ
SRC MOL_ID: 2; 3COQ
SRC SYNTHETIC: YES; 3COQ
SRC MOL_ID: 3; 3COQ
SRC SYNTHETIC: YES 3COQ
AUT M.HONG,M.X.FITZGERALD,S.HARPER,C.LUO,D.W.SPEICHER 3COQ
REM 3COQ
REM -------------------- Secondary structure summary ------------------- 3COQ
REM 3COQ
CHN /data/npidb/pdb/pdb_new/all/pdb3coq.pdb A 3COQ
REM 3COQ
REM . . . . . 3COQ
SEQ 1 EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEV 50 3COQ
STR HHHHHH TTTTTHHHHHH TTT HHHHHHH 3COQ
REM 3COQ
REM . . . 3COQ
SEQ 51 ESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLTGL 89 3COQ
STR HHHHHHHHHHHHHHTTTT HHHHHH HHHHHHHHH 3COQ
REM 3COQ
CHN /data/npidb/pdb/pdb_new/all/pdb3coq.pdb B 3COQ
REM 3COQ
REM . . . . . 3COQ
SEQ 1 EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEV 50 3COQ
STR HHHHHH TTTTTHHHHHH HHHHHHH 3COQ
REM 3COQ
REM . . . 3COQ
SEQ 51 ESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLTGL 89 3COQ
STR HHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHH 3COQ
REM 3COQ
REM 3COQ
REM 3COQ
LOC AlphaHelix ASP 12 A LYS 17 A 3COQ
LOC AlphaHelix ALA 29 A ASN 34 A 3COQ
LOC AlphaHelix ARG 51 A ILE 71 A 3COQ
LOC AlphaHelix LEU 77 A LYS 82 A 3COQ
LOC AlphaHelix LEU 86 A THR 94 A 3COQ
LOC AlphaHelix ASP 12 B LYS 17 B 3COQ
LOC AlphaHelix ALA 29 B ASN 34 B 3COQ
LOC AlphaHelix ARG 51 B ILE 71 B 3COQ
LOC AlphaHelix ARG 74 B LYS 82 B 3COQ
LOC AlphaHelix LEU 86 B GLY 95 B 3COQ
LOC TurnVIb GLU 24 A LYS 27 A 3COQ
LOC TurnVIII LYS 25 A CYS 28 A 3COQ
LOC TurnVIII PHE 72 A GLU 75 A 3COQ
LOC GammaInv TRP 36 A CYS 38 A 3COQ
LOC TurnIV GLU 24 B LYS 27 B 3COQ
LOC TurnIV LYS 25 B CYS 28 B 3COQ
REM 3COQ
REM --------------- Detailed secondary structure assignment------------- 3COQ
REM 3COQ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3COQ
ASG GLU A 8 1 C Coil 360.00 -62.16 190.2 3COQ
ASG GLN A 9 2 C Coil -64.89 134.18 50.8 3COQ
ASG ALA A 10 3 C Coil -95.30 167.80 23.8 3COQ
ASG CYS A 11 4 C Coil -89.69 149.52 0.0 3COQ
ASG ASP A 12 5 H AlphaHelix -35.36 -52.64 23.1 3COQ
ASG ILE A 13 6 H AlphaHelix -71.22 -61.64 44.5 3COQ
ASG CYS A 14 7 H AlphaHelix -46.07 -35.74 5.3 3COQ
ASG ARG A 15 8 H AlphaHelix -60.03 -54.18 119.8 3COQ
ASG LEU A 16 9 H AlphaHelix -71.53 -31.24 146.0 3COQ
ASG LYS A 17 10 H AlphaHelix -86.77 -14.04 114.1 3COQ
ASG LYS A 18 11 C Coil 64.47 36.09 189.2 3COQ
ASG LEU A 19 12 C Coil -107.99 172.97 77.5 3COQ
ASG LYS A 20 13 C Coil -70.42 137.99 195.3 3COQ
ASG CYS A 21 14 C Coil -98.52 137.91 9.2 3COQ
ASG SER A 22 15 C Coil -70.68 -33.17 55.4 3COQ
ASG LYS A 23 16 C Coil 81.11 -5.18 77.6 3COQ
ASG GLU A 24 17 T Turn -57.42 144.21 105.7 3COQ
ASG LYS A 25 18 T Turn -112.34 145.33 171.0 3COQ
ASG PRO A 26 19 T Turn -83.90 -40.73 111.2 3COQ
ASG LYS A 27 20 T Turn -99.44 136.77 72.5 3COQ
ASG CYS A 28 21 T Turn -101.76 164.86 0.0 3COQ
ASG ALA A 29 22 H AlphaHelix -3.37 -104.08 39.2 3COQ
ASG LYS A 30 23 H AlphaHelix -41.71 -55.52 86.9 3COQ
ASG CYS A 31 24 H AlphaHelix -58.07 -29.42 0.2 3COQ
ASG LEU A 32 25 H AlphaHelix -75.45 -50.30 99.5 3COQ
ASG LYS A 33 26 H AlphaHelix -50.14 -81.11 164.4 3COQ
ASG ASN A 34 27 H AlphaHelix -64.01 16.54 88.3 3COQ
ASG ASN A 35 28 C Coil 43.37 69.80 132.9 3COQ
ASG TRP A 36 29 T Turn -114.91 152.51 96.6 3COQ
ASG GLU A 37 30 T Turn -74.51 78.46 137.5 3COQ
ASG CYS A 38 31 T Turn -79.23 101.48 17.7 3COQ
ASG ARG A 39 32 C Coil -114.34 140.44 125.7 3COQ
ASG TYR A 40 33 C Coil -100.18 76.13 52.5 3COQ
ASG SER A 41 34 C Coil -63.59 141.24 31.5 3COQ
ASG PRO A 42 35 C Coil -64.32 149.70 113.0 3COQ
ASG LYS A 43 36 C Coil -57.71 106.14 159.2 3COQ
ASG THR A 44 37 C Coil -78.12 112.74 122.3 3COQ
ASG LYS A 45 38 C Coil -75.28 145.14 185.6 3COQ
ASG ARG A 46 39 C Coil -123.35 167.80 175.2 3COQ
ASG SER A 47 40 C Coil -89.59 160.50 30.8 3COQ
ASG PRO A 48 41 C Coil -61.41 131.19 77.9 3COQ
ASG LEU A 49 42 C Coil -84.39 84.67 65.1 3COQ
ASG THR A 50 43 C Coil -123.30 172.08 64.0 3COQ
ASG ARG A 51 44 H AlphaHelix -67.32 -31.57 77.0 3COQ
ASG ALA A 52 45 H AlphaHelix -75.84 -30.25 73.1 3COQ
ASG HIS A 53 46 H AlphaHelix -85.54 -41.02 49.8 3COQ
ASG LEU A 54 47 H AlphaHelix -44.34 -44.53 1.0 3COQ
ASG THR A 55 48 H AlphaHelix -74.08 -38.14 60.5 3COQ
ASG GLU A 56 49 H AlphaHelix -60.82 -45.94 95.4 3COQ
ASG VAL A 57 50 H AlphaHelix -69.46 -44.61 9.8 3COQ
ASG GLU A 58 51 H AlphaHelix -57.57 -28.48 51.7 3COQ
ASG SER A 59 52 H AlphaHelix -75.45 -26.52 41.1 3COQ
ASG ARG A 60 53 H AlphaHelix -72.39 -44.25 81.2 3COQ
ASG LEU A 61 54 H AlphaHelix -59.14 -42.40 23.3 3COQ
ASG GLU A 62 55 H AlphaHelix -58.74 -38.82 110.4 3COQ
ASG ARG A 63 56 H AlphaHelix -71.72 -43.70 40.3 3COQ
ASG LEU A 64 57 H AlphaHelix -64.56 -35.24 0.0 3COQ
ASG GLU A 65 58 H AlphaHelix -59.93 -36.62 55.5 3COQ
ASG GLN A 66 59 H AlphaHelix -69.13 -45.73 61.9 3COQ
ASG LEU A 67 60 H AlphaHelix -59.32 -40.77 0.0 3COQ
ASG PHE A 68 61 H AlphaHelix -75.63 -15.50 1.4 3COQ
ASG LEU A 69 62 H AlphaHelix -66.30 -35.27 99.8 3COQ
ASG LEU A 70 63 H AlphaHelix -75.35 -30.07 59.3 3COQ
ASG ILE A 71 64 H AlphaHelix -75.05 -49.60 25.0 3COQ
ASG PHE A 72 65 T Turn -109.75 81.07 31.2 3COQ
ASG PRO A 73 66 T Turn -63.54 -27.92 90.0 3COQ
ASG ARG A 74 67 T Turn -106.84 95.67 220.9 3COQ
ASG GLU A 75 68 T Turn 42.22 177.29 174.0 3COQ
ASG ASP A 76 69 C Coil -4.87 57.79 66.0 3COQ
ASG LEU A 77 70 H AlphaHelix -41.84 -31.91 22.7 3COQ
ASG ASP A 78 71 H AlphaHelix -69.26 -20.89 72.2 3COQ
ASG MET A 79 72 H AlphaHelix -72.00 -54.06 100.7 3COQ
ASG ILE A 80 73 H AlphaHelix -55.74 -44.30 6.8 3COQ
ASG LEU A 81 74 H AlphaHelix -62.98 -18.36 15.8 3COQ
ASG LYS A 82 75 H AlphaHelix -89.31 -14.53 160.1 3COQ
ASG MET A 83 76 C Coil -75.49 158.91 49.3 3COQ
ASG ASP A 84 77 C Coil -129.52 -21.10 143.2 3COQ
ASG SER A 85 78 C Coil -88.77 128.85 38.0 3COQ
ASG LEU A 86 79 H AlphaHelix -67.74 -59.69 111.0 3COQ
ASG GLN A 87 80 H AlphaHelix -41.63 -56.16 151.9 3COQ
ASG ASP A 88 81 H AlphaHelix -58.22 -49.79 100.8 3COQ
ASG ILE A 89 82 H AlphaHelix -59.21 -30.66 9.6 3COQ
ASG LYS A 90 83 H AlphaHelix -85.10 -17.21 111.8 3COQ
ASG ALA A 91 84 H AlphaHelix -76.57 -41.02 66.0 3COQ
ASG LEU A 92 85 H AlphaHelix -60.12 -54.64 77.1 3COQ
ASG LEU A 93 86 H AlphaHelix -65.14 -27.67 6.9 3COQ
ASG THR A 94 87 H AlphaHelix -68.12 -5.64 113.1 3COQ
ASG GLY A 95 88 C Coil -79.73 59.55 73.7 3COQ
ASG LEU A 96 89 C Coil -94.91 360.00 152.0 3COQ
ASG GLU B 8 1 C Coil 360.00 -43.69 208.3 3COQ
ASG GLN B 9 2 C Coil -69.90 128.46 57.1 3COQ
ASG ALA B 10 3 C Coil -87.53 154.18 25.5 3COQ
ASG CYS B 11 4 C Coil -70.79 155.69 0.0 3COQ
ASG ASP B 12 5 H AlphaHelix -50.93 -39.21 28.9 3COQ
ASG ILE B 13 6 H AlphaHelix -78.72 -52.94 43.3 3COQ
ASG CYS B 14 7 H AlphaHelix -51.01 -38.43 7.5 3COQ
ASG ARG B 15 8 H AlphaHelix -63.09 -46.58 118.1 3COQ
ASG LEU B 16 9 H AlphaHelix -70.36 -30.16 152.6 3COQ
ASG LYS B 17 10 H AlphaHelix -92.72 -20.06 126.1 3COQ
ASG LYS B 18 11 C Coil 73.09 33.95 190.3 3COQ
ASG LEU B 19 12 C Coil -111.68 151.20 105.8 3COQ
ASG LYS B 20 13 C Coil -46.07 132.00 175.7 3COQ
ASG CYS B 21 14 C Coil -101.99 138.59 10.1 3COQ
ASG SER B 22 15 C Coil -70.67 -35.24 46.8 3COQ
ASG LYS B 23 16 C Coil 79.73 5.04 74.7 3COQ
ASG GLU B 24 17 T Turn -64.09 -173.43 99.6 3COQ
ASG LYS B 25 18 T Turn -133.61 124.00 162.2 3COQ
ASG PRO B 26 19 T Turn -81.91 -68.54 107.0 3COQ
ASG LYS B 27 20 T Turn -66.37 -159.21 75.9 3COQ
ASG CYS B 28 21 T Turn -159.26 162.06 0.5 3COQ
ASG ALA B 29 22 H AlphaHelix -37.85 -62.35 28.1 3COQ
ASG LYS B 30 23 H AlphaHelix -77.27 -31.41 89.2 3COQ
ASG CYS B 31 24 H AlphaHelix -67.50 -43.57 1.8 3COQ
ASG LEU B 32 25 H AlphaHelix -60.93 -65.62 105.5 3COQ
ASG LYS B 33 26 H AlphaHelix -44.82 -81.60 162.4 3COQ
ASG ASN B 34 27 H AlphaHelix -53.34 -10.45 101.7 3COQ
ASG ASN B 35 28 C Coil 70.53 74.45 128.6 3COQ
ASG TRP B 36 29 C Coil -143.11 153.96 117.3 3COQ
ASG GLU B 37 30 C Coil -85.43 100.32 135.7 3COQ
ASG CYS B 38 31 C Coil -76.47 125.73 18.4 3COQ
ASG ARG B 39 32 C Coil -127.26 145.45 113.3 3COQ
ASG TYR B 40 33 C Coil -105.27 89.38 53.8 3COQ
ASG SER B 41 34 C Coil -55.16 141.03 40.0 3COQ
ASG PRO B 42 35 C Coil -51.77 144.47 112.4 3COQ
ASG LYS B 43 36 C Coil -56.05 145.18 158.2 3COQ
ASG THR B 44 37 C Coil -77.02 127.76 106.9 3COQ
ASG LYS B 45 38 C Coil -66.13 125.32 203.9 3COQ
ASG ARG B 46 39 C Coil -127.82 170.57 175.6 3COQ
ASG SER B 47 40 C Coil -81.13 151.33 28.2 3COQ
ASG PRO B 48 41 C Coil -64.20 136.15 75.3 3COQ
ASG LEU B 49 42 C Coil -98.16 75.64 63.5 3COQ
ASG THR B 50 43 C Coil -114.05 175.10 61.3 3COQ
ASG ARG B 51 44 H AlphaHelix -84.07 -34.51 65.5 3COQ
ASG ALA B 52 45 H AlphaHelix -62.54 -40.95 71.2 3COQ
ASG HIS B 53 46 H AlphaHelix -76.72 -40.13 34.1 3COQ
ASG LEU B 54 47 H AlphaHelix -53.73 -41.89 0.6 3COQ
ASG THR B 55 48 H AlphaHelix -64.80 -39.68 62.9 3COQ
ASG GLU B 56 49 H AlphaHelix -49.34 -53.86 125.0 3COQ
ASG VAL B 57 50 H AlphaHelix -73.04 -38.06 12.5 3COQ
ASG GLU B 58 51 H AlphaHelix -70.33 -30.69 49.7 3COQ
ASG SER B 59 52 H AlphaHelix -85.39 -17.64 65.7 3COQ
ASG ARG B 60 53 H AlphaHelix -83.34 -38.19 62.2 3COQ
ASG LEU B 61 54 H AlphaHelix -60.65 -37.70 12.4 3COQ
ASG GLU B 62 55 H AlphaHelix -66.63 -40.65 114.3 3COQ
ASG ARG B 63 56 H AlphaHelix -71.61 -23.83 65.1 3COQ
ASG LEU B 64 57 H AlphaHelix -78.32 -36.81 0.0 3COQ
ASG GLU B 65 58 H AlphaHelix -60.31 -34.30 43.3 3COQ
ASG GLN B 66 59 H AlphaHelix -72.54 -38.78 90.1 3COQ
ASG LEU B 67 60 H AlphaHelix -69.52 -37.77 4.7 3COQ
ASG PHE B 68 61 H AlphaHelix -58.65 -37.61 0.0 3COQ
ASG LEU B 69 62 H AlphaHelix -72.61 -11.42 74.8 3COQ
ASG LEU B 70 63 H AlphaHelix -85.64 -13.29 45.6 3COQ
ASG ILE B 71 64 H AlphaHelix -105.82 -36.68 41.0 3COQ
ASG PHE B 72 65 C Coil -142.13 171.87 33.0 3COQ
ASG PRO B 73 66 C Coil -72.39 159.21 64.6 3COQ
ASG ARG B 74 67 H AlphaHelix -63.37 -44.50 161.6 3COQ
ASG GLU B 75 68 H AlphaHelix -44.16 -34.20 125.5 3COQ
ASG ASP B 76 69 H AlphaHelix -73.40 -37.45 27.1 3COQ
ASG LEU B 77 70 H AlphaHelix -45.90 -45.03 6.6 3COQ
ASG ASP B 78 71 H AlphaHelix -72.74 -29.78 61.8 3COQ
ASG MET B 79 72 H AlphaHelix -70.46 -45.54 94.8 3COQ
ASG ILE B 80 73 H AlphaHelix -69.02 -41.19 0.0 3COQ
ASG LEU B 81 74 H AlphaHelix -56.73 -25.12 10.4 3COQ
ASG LYS B 82 75 H AlphaHelix -96.69 9.52 162.4 3COQ
ASG MET B 83 76 C Coil -93.84 139.03 27.8 3COQ
ASG ASP B 84 77 C Coil -98.02 -8.58 150.0 3COQ
ASG SER B 85 78 C Coil -101.72 132.87 41.4 3COQ
ASG LEU B 86 79 H AlphaHelix -66.24 -34.41 114.5 3COQ
ASG GLN B 87 80 H AlphaHelix -58.14 -42.73 163.7 3COQ
ASG ASP B 88 81 H AlphaHelix -68.03 -37.80 89.2 3COQ
ASG ILE B 89 82 H AlphaHelix -65.05 -28.56 6.8 3COQ
ASG LYS B 90 83 H AlphaHelix -83.85 -35.01 123.5 3COQ
ASG ALA B 91 84 H AlphaHelix -64.49 -37.43 58.6 3COQ
ASG LEU B 92 85 H AlphaHelix -51.81 -36.94 38.8 3COQ
ASG LEU B 93 86 H AlphaHelix -86.11 -31.32 29.8 3COQ
ASG THR B 94 87 H AlphaHelix -68.72 -39.32 95.9 3COQ
ASG GLY B 95 88 H AlphaHelix -64.01 4.62 70.6 3COQ
ASG LEU B 96 89 C Coil 46.79 360.00 160.7 3COQ